RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 UBR2Q8IWV8 1755 aa23.52■■□□□ 1.36
COL7A1-205ENST00000465238 ZPR1O75312 459 aa23.52■■□□□ 1.36
COL7A1-205ENST00000465238 DDR1Q08345 913 aa23.51■■□□□ 1.35
COL7A1-205ENST00000465238 GNAT3A8MTJ3 354 aa23.5■■□□□ 1.35
COL7A1-205ENST00000465238 FCHSD2O94868 740 aa23.5■■□□□ 1.35
COL7A1-205ENST00000465238 TTC5Q8N0Z6 440 aa23.5■■□□□ 1.35
COL7A1-205ENST00000465238 TM4SF1P30408 202 aa23.49■■□□□ 1.35
COL7A1-205ENST00000465238 PRKAR2BP31323 418 aa23.49■■□□□ 1.35
COL7A1-205ENST00000465238 TEFQ10587 303 aa23.49■■□□□ 1.35
COL7A1-205ENST00000465238 USPL1Q5W0Q7 1092 aa23.49■■□□□ 1.35
COL7A1-205ENST00000465238 COL15A1P39059 1388 aa23.49■■□□□ 1.35
COL7A1-205ENST00000465238 ZNF526Q8TF50 670 aaPredicted RBP23.48■■□□□ 1.35
COL7A1-205ENST00000465238 RSPH6AQ9H0K4 717 aa23.48■■□□□ 1.35
COL7A1-205ENST00000465238 NARFQ9UHQ1 456 aa23.48■■□□□ 1.35
COL7A1-205ENST00000465238 ZBTB1Q9Y2K1 713 aa23.48■■□□□ 1.35
COL7A1-205ENST00000465238 ARFGEF1Q9Y6D6 1849 aa23.47■■□□□ 1.35
COL7A1-205ENST00000465238 POLRMTO00411 1230 aaKnown RBP23.47■■□□□ 1.35
COL7A1-205ENST00000465238 KCNA3P22001 575 aa23.47■■□□□ 1.35
COL7A1-205ENST00000465238 IL17REQ8NFR9 667 aa23.47■■□□□ 1.35
COL7A1-205ENST00000465238 PIM2Q9P1W9 311 aa23.47■■□□□ 1.35
COL7A1-205ENST00000465238 SIPA1L3O60292 1781 aaPredicted RBP23.46■■□□□ 1.35
COL7A1-205ENST00000465238 STARD3NLO95772 234 aa23.46■■□□□ 1.35
COL7A1-205ENST00000465238 WDR43Q15061 677 aaKnown RBP eCLIP23.46■■□□□ 1.35
COL7A1-205ENST00000465238 ARHGAP27Q6ZUM4 889 aa23.46■■□□□ 1.35
COL7A1-205ENST00000465238 PNNQ9H307 717 aaKnown RBP23.46■■□□□ 1.35
COL7A1-205ENST00000465238 NEFMP07197 916 aa23.45■■□□□ 1.34
COL7A1-205ENST00000465238 ZNF790Q6PG37 636 aa23.45■■□□□ 1.34
COL7A1-205ENST00000465238 TEX13AQ9BXU3 409 aaPredicted RBP23.44■■□□□ 1.34
COL7A1-205ENST00000465238 CEP350Q5VT06 3117 aa23.44■■□□□ 1.34
COL7A1-205ENST00000465238 DALRD3Q5D0E6 543 aaKnown RBP23.43■■□□□ 1.34
COL7A1-205ENST00000465238 ZNF496Q96IT1 587 aaPredicted RBP23.43■■□□□ 1.34
COL7A1-205ENST00000465238 AFDNP55196 1824 aaKnown RBP23.43■■□□□ 1.34
COL7A1-205ENST00000465238 CEMIPQ8WUJ3 1361 aa23.42■■□□□ 1.34
COL7A1-205ENST00000465238 HEG1Q9ULI3 1381 aa23.42■■□□□ 1.34
COL7A1-205ENST00000465238 CANXP27824 592 aaKnown RBP23.42■■□□□ 1.34
COL7A1-205ENST00000465238 NFIXQ14938 502 aa23.42■■□□□ 1.34
COL7A1-205ENST00000465238 PHACTR3Q96KR7 559 aa23.42■■□□□ 1.34
COL7A1-205ENST00000465238 BCL2L12Q9HB09 334 aa23.41■■□□□ 1.34
COL7A1-205ENST00000465238 NRXN2Q9P2S2 1712 aa23.41■■□□□ 1.34
COL7A1-205ENST00000465238 A0A087WZG4 1122 aa23.4■■□□□ 1.34
COL7A1-205ENST00000465238 CHRNA5P30532 468 aa23.4■■□□□ 1.34
COL7A1-205ENST00000465238 EIF5P55010 431 aaKnown RBP23.4■■□□□ 1.34
COL7A1-205ENST00000465238 CCDC184Q52MB2 194 aa23.39■■□□□ 1.33
COL7A1-205ENST00000465238 FMNL2Q96PY5 1086 aa23.39■■□□□ 1.33
COL7A1-205ENST00000465238 MRS2Q9HD23 443 aa23.39■■□□□ 1.33
COL7A1-205ENST00000465238 SERPINB2P05120 415 aa23.38■■□□□ 1.33
COL7A1-205ENST00000465238 MAPK8IP3Q9UPT6 1336 aa23.37■■□□□ 1.33
COL7A1-205ENST00000465238 KIF3CO14782 793 aa23.37■■□□□ 1.33
COL7A1-205ENST00000465238 DIEXFQ68CQ4 756 aaKnown RBP23.37■■□□□ 1.33
COL7A1-205ENST00000465238 PLEKHF1Q96S99 279 aa23.37■■□□□ 1.33
COL7A1-205ENST00000465238 ADAMTS8Q9UP79 889 aa23.37■■□□□ 1.33
COL7A1-205ENST00000465238 BTBD11A6QL63 1104 aa23.36■■□□□ 1.33
COL7A1-205ENST00000465238 IL6STP40189 918 aaPredicted RBP23.36■■□□□ 1.33
COL7A1-205ENST00000465238 C9orf131Q5VYM1 1079 aa23.35■■□□□ 1.33
COL7A1-205ENST00000465238 RTF1Q92541 710 aaKnown RBP23.34■■□□□ 1.33
COL7A1-205ENST00000465238 SCN7AQ01118 1682 aa23.34■■□□□ 1.33
COL7A1-205ENST00000465238 DLEC1Q9Y238 1755 aa23.34■■□□□ 1.33
COL7A1-205ENST00000465238 HSPA6P17066 643 aa23.33■■□□□ 1.33
COL7A1-205ENST00000465238 NPM2Q86SE8 214 aaKnown RBP23.33■■□□□ 1.33
COL7A1-205ENST00000465238 BICDL1Q6ZP65 573 aa23.32■■□□□ 1.32
COL7A1-205ENST00000465238 ZNF330Q9Y3S2 320 aaPredicted RBP23.32■■□□□ 1.32
COL7A1-205ENST00000465238 SBF1O95248 1867 aa23.31■■□□□ 1.32
COL7A1-205ENST00000465238 KCNQ3O43525 872 aa23.31■■□□□ 1.32
COL7A1-205ENST00000465238 CCDC146Q8IYE0 955 aa23.31■■□□□ 1.32
COL7A1-205ENST00000465238 RUNDC1Q96C34 613 aa23.31■■□□□ 1.32
COL7A1-205ENST00000465238 TBC1D2BQ9UPU7 963 aa23.31■■□□□ 1.32
COL7A1-205ENST00000465238 HTATSF1O43719 755 aaKnown RBP23.3■■□□□ 1.32
COL7A1-205ENST00000465238 A1BGP04217 495 aa23.3■■□□□ 1.32
COL7A1-205ENST00000465238 NFE2L2Q16236 605 aa23.3■■□□□ 1.32
COL7A1-205ENST00000465238 TBC1D9BQ66K14 1250 aa23.3■■□□□ 1.32
COL7A1-205ENST00000465238 PNISRQ8TF01 805 aaKnown RBP23.3■■□□□ 1.32
COL7A1-205ENST00000465238 H0YIN7 160 aa23.29■■□□□ 1.32
COL7A1-205ENST00000465238 TOMM70O94826 608 aa23.29■■□□□ 1.32
COL7A1-205ENST00000465238 MCM10Q7L590 875 aa23.29■■□□□ 1.32
COL7A1-205ENST00000465238 C2CD5Q86YS7 1000 aa23.29■■□□□ 1.32
COL7A1-205ENST00000465238 TTLL6Q8N841 843 aa23.29■■□□□ 1.32
COL7A1-205ENST00000465238 RNF181Q9P0P0 153 aa23.29■■□□□ 1.32
COL7A1-205ENST00000465238 CARMIL3Q8ND23 1372 aa23.28■■□□□ 1.32
COL7A1-205ENST00000465238 NMRK2Q9NPI5 230 aa23.28■■□□□ 1.32
COL7A1-205ENST00000465238 PDZRN3Q9UPQ7 1066 aa23.28■■□□□ 1.32
COL7A1-205ENST00000465238 DLG5Q8TDM6 1919 aa23.27■■□□□ 1.32
COL7A1-205ENST00000465238 SNRPA1P09661 255 aaKnown RBP23.27■■□□□ 1.32
COL7A1-205ENST00000465238 USP16Q9Y5T5 823 aa23.27■■□□□ 1.32
COL7A1-205ENST00000465238 CAMTA2O94983 1202 aa23.26■■□□□ 1.31
COL7A1-205ENST00000465238 BRIP1Q9BX63 1249 aa23.26■■□□□ 1.31
COL7A1-205ENST00000465238 KDM2BQ8NHM5 1336 aa23.26■■□□□ 1.31
COL7A1-205ENST00000465238 ANKRD31Q8N7Z5 1873 aa23.26■■□□□ 1.31
COL7A1-205ENST00000465238 BCORQ6W2J9 1755 aa23.25■■□□□ 1.31
COL7A1-205ENST00000465238 PDE6BP35913 854 aa23.25■■□□□ 1.31
COL7A1-205ENST00000465238 RIPK4P57078 832 aa23.25■■□□□ 1.31
COL7A1-205ENST00000465238 DCTN1Q14203 1278 aa23.25■■□□□ 1.31
COL7A1-205ENST00000465238 DZIP3Q86Y13 1208 aaKnown RBP23.25■■□□□ 1.31
COL7A1-205ENST00000465238 SETDB2Q96T68 719 aa23.25■■□□□ 1.31
COL7A1-205ENST00000465238 TMPOP42166 694 aaKnown RBP23.24■■□□□ 1.31
COL7A1-205ENST00000465238 PRR5LQ6MZQ0 368 aa23.24■■□□□ 1.31
COL7A1-205ENST00000465238 ZC3H4Q9UPT8 1303 aaKnown RBP23.24■■□□□ 1.31
COL7A1-205ENST00000465238 TAF7Q15545 349 aaPredicted RBP23.23■■□□□ 1.31
COL7A1-205ENST00000465238 PRAMEF22A3QJZ6 481 aa23.22■■□□□ 1.31
COL7A1-205ENST00000465238 CCER2I3L3R5 266 aa23.22■■□□□ 1.31
COL7A1-205ENST00000465238 LMNB1P20700 586 aa23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms