RNA–Protein interactions for RNA: ENST00000461055.2

NEDD9-206, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 592 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-206ENST00000461055 PCDH11XQ9BZA7 1347 aa13.86□□□□□ -0.19
NEDD9-206ENST00000461055 PCDH11YQ9BZA8 1340 aa13.86□□□□□ -0.19
NEDD9-206ENST00000461055 PKD1L3Q7Z443 1732 aa13.85□□□□□ -0.19
NEDD9-206ENST00000461055 IL2RBP14784 551 aa13.85□□□□□ -0.19
NEDD9-206ENST00000461055 PDE4AP27815 886 aa13.85□□□□□ -0.19
NEDD9-206ENST00000461055 FLIIQ13045 1269 aa13.85□□□□□ -0.19
NEDD9-206ENST00000461055 BACH2Q9BYV9 841 aa13.85□□□□□ -0.19
NEDD9-206ENST00000461055 PDGFDQ9GZP0 370 aaPredicted RBP13.85□□□□□ -0.19
NEDD9-206ENST00000461055 DBF4Q9UBU7 674 aaPredicted RBP13.85□□□□□ -0.19
NEDD9-206ENST00000461055 MEGF6O75095 1541 aa13.85□□□□□ -0.19
NEDD9-206ENST00000461055 PARP4Q9UKK3 1724 aaKnown RBP13.84□□□□□ -0.19
NEDD9-206ENST00000461055 ERVV-2B6SEH9 535 aa13.84□□□□□ -0.19
NEDD9-206ENST00000461055 GNAI3P08754 354 aa13.84□□□□□ -0.19
NEDD9-206ENST00000461055 NKX1-1Q15270 411 aaPredicted RBP13.84□□□□□ -0.19
NEDD9-206ENST00000461055 FAM161AQ3B820 660 aa13.84□□□□□ -0.19
NEDD9-206ENST00000461055 HDAC5Q9UQL6 1122 aa13.84□□□□□ -0.19
NEDD9-206ENST00000461055 PXDNLA1KZ92 1463 aa13.84□□□□□ -0.19
NEDD9-206ENST00000461055 MRC1P22897 1456 aa13.83□□□□□ -0.2
NEDD9-206ENST00000461055 GIGYF1O75420 1035 aaPredicted RBP13.83□□□□□ -0.2
NEDD9-206ENST00000461055 SIPA1L3O60292 1781 aaPredicted RBP13.82□□□□□ -0.2
NEDD9-206ENST00000461055 SCN11AQ9UI33 1791 aa13.82□□□□□ -0.2
NEDD9-206ENST00000461055 HMMRO75330 724 aa13.82□□□□□ -0.2
NEDD9-206ENST00000461055 FKBP5Q13451 457 aaPredicted RBP13.82□□□□□ -0.2
NEDD9-206ENST00000461055 ZNF790Q6PG37 636 aa13.82□□□□□ -0.2
NEDD9-206ENST00000461055 HYPKQ9NX55 129 aa13.82□□□□□ -0.2
NEDD9-206ENST00000461055 PDZRN3Q9UPQ7 1066 aa13.82□□□□□ -0.2
NEDD9-206ENST00000461055 CYP27B1O15528 508 aa13.81□□□□□ -0.2
NEDD9-206ENST00000461055 CABP4P57796 275 aa13.81□□□□□ -0.2
NEDD9-206ENST00000461055 NBPF14Q5TI25 921 aa13.81□□□□□ -0.2
NEDD9-206ENST00000461055 TTC5Q8N0Z6 440 aa13.81□□□□□ -0.2
NEDD9-206ENST00000461055 PROM2Q8N271 834 aa13.81□□□□□ -0.2
NEDD9-206ENST00000461055 ANKRD44Q8N8A2 993 aa13.81□□□□□ -0.2
NEDD9-206ENST00000461055 CDCA7Q9BWT1 371 aaPredicted RBP13.81□□□□□ -0.2
NEDD9-206ENST00000461055 ANO8Q9HCE9 1232 aaPredicted RBP13.81□□□□□ -0.2
NEDD9-206ENST00000461055 KDM6AO15550 1401 aaPredicted RBP13.81□□□□□ -0.2
NEDD9-206ENST00000461055 DDX58O95786 925 aaKnown RBP13.8□□□□□ -0.2
NEDD9-206ENST00000461055 NUCB1Q02818 461 aa13.8□□□□□ -0.2
NEDD9-206ENST00000461055 G2E3Q7L622 706 aa13.8□□□□□ -0.2
NEDD9-206ENST00000461055 IBTKQ9P2D0 1353 aaPredicted RBP13.8□□□□□ -0.2
NEDD9-206ENST00000461055 KCNQ2O43526 872 aa13.79□□□□□ -0.2
NEDD9-206ENST00000461055 EIF5BO60841 1220 aaKnown RBP13.79□□□□□ -0.2
NEDD9-206ENST00000461055 GNAI2P04899 355 aa13.79□□□□□ -0.2
NEDD9-206ENST00000461055 SNRPA1P09661 255 aaKnown RBP13.79□□□□□ -0.2
NEDD9-206ENST00000461055 EIF2S2P20042 333 aaKnown RBP13.79□□□□□ -0.2
NEDD9-206ENST00000461055 YY1P25490 414 aa13.79□□□□□ -0.2
NEDD9-206ENST00000461055 RGS3P49796 1198 aa13.79□□□□□ -0.2
NEDD9-206ENST00000461055 MARCH10Q8NA82 808 aaPredicted RBP13.79□□□□□ -0.2
NEDD9-206ENST00000461055 NFATC2IPQ8NCF5 419 aa13.79□□□□□ -0.2
NEDD9-206ENST00000461055 FMNL2Q96PY5 1086 aa13.79□□□□□ -0.2
NEDD9-206ENST00000461055 DDX21Q9NR30 783 aaKnown RBP eCLIP13.79□□□□□ -0.2
NEDD9-206ENST00000461055 ANP32AP39687 249 aaKnown RBP13.78□□□□□ -0.2
NEDD9-206ENST00000461055 SLC4A10Q6U841 1118 aa13.78□□□□□ -0.2
NEDD9-206ENST00000461055 DCTPP1Q9H773 170 aa13.78□□□□□ -0.2
NEDD9-206ENST00000461055 SPON1Q9HCB6 807 aa13.78□□□□□ -0.2
NEDD9-206ENST00000461055 ZBTB47Q9UFB7 747 aaPredicted RBP13.78□□□□□ -0.2
NEDD9-206ENST00000461055 THRAP3Q9Y2W1 955 aaKnown RBP13.78□□□□□ -0.2
NEDD9-206ENST00000461055 ERBB4Q15303 1308 aa13.78□□□□□ -0.2
NEDD9-206ENST00000461055 VIRMAQ69YN4 1812 aaKnown RBP13.78□□□□□ -0.2
NEDD9-206ENST00000461055 KCNQ3O43525 872 aa13.77□□□□□ -0.21
NEDD9-206ENST00000461055 NUP188Q5SRE5 1749 aa13.77□□□□□ -0.21
NEDD9-206ENST00000461055 CHD1LQ86WJ1 897 aa13.77□□□□□ -0.21
NEDD9-206ENST00000461055 ATP10DQ9P241 1426 aa13.77□□□□□ -0.21
NEDD9-206ENST00000461055 CHPF2Q9P2E5 772 aa13.77□□□□□ -0.21
NEDD9-206ENST00000461055 PPP1R1BQ9UD71 204 aaPredicted RBP13.77□□□□□ -0.21
NEDD9-206ENST00000461055 ALDH1L1O75891 902 aa13.76□□□□□ -0.21
NEDD9-206ENST00000461055 ZBTB7AO95365 584 aa13.76□□□□□ -0.21
NEDD9-206ENST00000461055 DDB1Q16531 1140 aa13.76□□□□□ -0.21
NEDD9-206ENST00000461055 KSR2Q6VAB6 950 aa13.76□□□□□ -0.21
NEDD9-206ENST00000461055 DNAAF4Q8WXU2 420 aa13.76□□□□□ -0.21
NEDD9-206ENST00000461055 SRCIN1Q9C0H9 1055 aa13.76□□□□□ -0.21
NEDD9-206ENST00000461055 ATF5Q9Y2D1 282 aaPredicted RBP13.76□□□□□ -0.21
NEDD9-206ENST00000461055 CEP85Q6P2H3 762 aa13.75□□□□□ -0.21
NEDD9-206ENST00000461055 NECTIN2Q92692 538 aa13.75□□□□□ -0.21
NEDD9-206ENST00000461055 N4BP2Q86UW6 1770 aaPredicted RBP13.75□□□□□ -0.21
NEDD9-206ENST00000461055 RREB1Q92766 1687 aa13.75□□□□□ -0.21
NEDD9-206ENST00000461055 F6X3S4 739 aa13.74□□□□□ -0.21
NEDD9-206ENST00000461055 PLSCR1O15162 318 aa13.74□□□□□ -0.21
NEDD9-206ENST00000461055 SIRT2Q8IXJ6 389 aa13.74□□□□□ -0.21
NEDD9-206ENST00000461055 MEIS3Q99687 375 aa13.74□□□□□ -0.21
NEDD9-206ENST00000461055 TEX13AQ9BXU3 409 aaPredicted RBP13.74□□□□□ -0.21
NEDD9-206ENST00000461055 UTRNP46939 3433 aa13.73□□□□□ -0.21
NEDD9-206ENST00000461055 EXOC5O00471 708 aa13.73□□□□□ -0.21
NEDD9-206ENST00000461055 UBTFL1P0CB47 393 aaPredicted RBP13.73□□□□□ -0.21
NEDD9-206ENST00000461055 C8orf34Q49A92 452 aa13.73□□□□□ -0.21
NEDD9-206ENST00000461055 ANKRD45Q5TZF3 282 aa13.73□□□□□ -0.21
NEDD9-206ENST00000461055 BCL11BQ9C0K0 894 aaPredicted RBP13.73□□□□□ -0.21
NEDD9-206ENST00000461055 PHAXQ9H814 394 aaKnown RBP13.73□□□□□ -0.21
NEDD9-206ENST00000461055 PI4KAP2A4QPH2 592 aa13.72□□□□□ -0.21
NEDD9-206ENST00000461055 ATP8B2P98198 1209 aa13.72□□□□□ -0.21
NEDD9-206ENST00000461055 BEND3Q5T5X7 828 aa13.72□□□□□ -0.21
NEDD9-206ENST00000461055 VSIG10Q8N0Z9 540 aa13.72□□□□□ -0.21
NEDD9-206ENST00000461055 PI4KAP1Q8N8J0 262 aa13.72□□□□□ -0.21
NEDD9-206ENST00000461055 ZNF496Q96IT1 587 aaPredicted RBP13.72□□□□□ -0.21
NEDD9-206ENST00000461055 C1orf115Q9H7X2 142 aa13.72□□□□□ -0.21
NEDD9-206ENST00000461055 SLC39A6Q13433 755 aa13.71□□□□□ -0.21
NEDD9-206ENST00000461055 LINS1Q8NG48 757 aa13.71□□□□□ -0.21
NEDD9-206ENST00000461055 DDX54Q8TDD1 881 aaKnown RBP13.71□□□□□ -0.21
NEDD9-206ENST00000461055 USP44Q9H0E7 712 aa13.71□□□□□ -0.21
NEDD9-206ENST00000461055 PTGER2P43116 358 aa13.7□□□□□ -0.22
NEDD9-206ENST00000461055 NEXNQ0ZGT2 675 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms