RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 NRXN2Q9P2S2 1712 aa30.49■■■□□ 2.47
PTPN4-207ENST00000460162 A0A0G2JLW4 131 aa30.48■■■□□ 2.47
PTPN4-207ENST00000460162 USPL1Q5W0Q7 1092 aa30.48■■■□□ 2.47
PTPN4-207ENST00000460162 ZNF790Q6PG37 636 aa30.48■■■□□ 2.47
PTPN4-207ENST00000460162 PHACTR3Q96KR7 559 aa30.48■■■□□ 2.47
PTPN4-207ENST00000460162 HEG1Q9ULI3 1381 aa30.48■■■□□ 2.47
PTPN4-207ENST00000460162 SCN7AQ01118 1682 aa30.48■■■□□ 2.47
PTPN4-207ENST00000460162 AFDNP55196 1824 aaKnown RBP30.47■■■□□ 2.47
PTPN4-207ENST00000460162 DPEP1P16444 411 aa30.47■■■□□ 2.47
PTPN4-207ENST00000460162 NARFQ9UHQ1 456 aa30.47■■■□□ 2.47
PTPN4-207ENST00000460162 POLRMTO00411 1230 aaKnown RBP30.46■■■□□ 2.47
PTPN4-207ENST00000460162 STARD3NLO95772 234 aa30.46■■■□□ 2.47
PTPN4-207ENST00000460162 U2AF1L5P0DN76 240 aaPredicted RBP30.46■■■□□ 2.47
PTPN4-207ENST00000460162 U2AF1Q01081 240 aaKnown RBP eCLIP30.46■■■□□ 2.47
PTPN4-207ENST00000460162 BCS1LQ9Y276 419 aa30.46■■■□□ 2.47
PTPN4-207ENST00000460162 TM4SF1P30408 202 aa30.45■■■□□ 2.47
PTPN4-207ENST00000460162 ZNF496Q96IT1 587 aaPredicted RBP30.45■■■□□ 2.47
PTPN4-207ENST00000460162 FCHSD2O94868 740 aa30.43■■■□□ 2.46
PTPN4-207ENST00000460162 TEX13AQ9BXU3 409 aaPredicted RBP30.43■■■□□ 2.46
PTPN4-207ENST00000460162 GPBP1L1Q9HC44 474 aaPredicted RBP30.42■■■□□ 2.46
PTPN4-207ENST00000460162 DLEC1Q9Y238 1755 aa30.41■■■□□ 2.46
PTPN4-207ENST00000460162 CANXP27824 592 aaKnown RBP30.41■■■□□ 2.46
PTPN4-207ENST00000460162 FMNL2Q96PY5 1086 aa30.41■■■□□ 2.46
PTPN4-207ENST00000460162 KCNA3P22001 575 aa30.4■■■□□ 2.46
PTPN4-207ENST00000460162 EIF5P55010 431 aaKnown RBP30.4■■■□□ 2.46
PTPN4-207ENST00000460162 NFIXQ14938 502 aa30.39■■■□□ 2.46
PTPN4-207ENST00000460162 PIM2Q9P1W9 311 aa30.39■■■□□ 2.46
PTPN4-207ENST00000460162 A0A087WZG4 1122 aa30.38■■■□□ 2.45
PTPN4-207ENST00000460162 SENP3-EIF4A1A0A087X0R7 540 aa30.38■■■□□ 2.45
PTPN4-207ENST00000460162 BTBD11A6QL63 1104 aa30.38■■■□□ 2.45
PTPN4-207ENST00000460162 BCL2L12Q9HB09 334 aa30.38■■■□□ 2.45
PTPN4-207ENST00000460162 BCORQ6W2J9 1755 aa30.37■■■□□ 2.45
PTPN4-207ENST00000460162 RTF1Q92541 710 aaKnown RBP30.37■■■□□ 2.45
PTPN4-207ENST00000460162 DLG5Q8TDM6 1919 aa30.34■■■□□ 2.45
PTPN4-207ENST00000460162 IL6STP40189 918 aaPredicted RBP30.34■■■□□ 2.45
PTPN4-207ENST00000460162 DALRD3Q5D0E6 543 aaKnown RBP30.34■■■□□ 2.45
PTPN4-207ENST00000460162 HTATSF1O43719 755 aaKnown RBP30.33■■■□□ 2.45
PTPN4-207ENST00000460162 ARHGAP27Q6ZUM4 889 aa30.33■■■□□ 2.45
PTPN4-207ENST00000460162 ZNF526Q8TF50 670 aaPredicted RBP30.33■■■□□ 2.45
PTPN4-207ENST00000460162 CHRNA5P30532 468 aa30.32■■■□□ 2.44
PTPN4-207ENST00000460162 MCM10Q7L590 875 aa30.32■■■□□ 2.44
PTPN4-207ENST00000460162 KCNQ3O43525 872 aa30.31■■■□□ 2.44
PTPN4-207ENST00000460162 SERPINB2P05120 415 aa30.31■■■□□ 2.44
PTPN4-207ENST00000460162 LAMB4A4D0S4 1761 aa30.31■■■□□ 2.44
PTPN4-207ENST00000460162 ZNF330Q9Y3S2 320 aaPredicted RBP30.29■■■□□ 2.44
PTPN4-207ENST00000460162 ANKRD31Q8N7Z5 1873 aa30.28■■■□□ 2.44
PTPN4-207ENST00000460162 NEFMP07197 916 aa30.28■■■□□ 2.44
PTPN4-207ENST00000460162 KDM3BQ7LBC6 1761 aa30.28■■■□□ 2.44
PTPN4-207ENST00000460162 CARMIL3Q8ND23 1372 aa30.28■■■□□ 2.44
PTPN4-207ENST00000460162 NPM2Q86SE8 214 aaKnown RBP30.27■■■□□ 2.44
PTPN4-207ENST00000460162 A1BGP04217 495 aa30.26■■■□□ 2.43
PTPN4-207ENST00000460162 DCTN1Q14203 1278 aa30.25■■■□□ 2.43
PTPN4-207ENST00000460162 TBC1D9BQ66K14 1250 aa30.25■■■□□ 2.43
PTPN4-207ENST00000460162 BICDL1Q6ZP65 573 aa30.25■■■□□ 2.43
PTPN4-207ENST00000460162 TBC1D2BQ9UPU7 963 aa30.25■■■□□ 2.43
PTPN4-207ENST00000460162 SNRPA1P09661 255 aaKnown RBP30.24■■■□□ 2.43
PTPN4-207ENST00000460162 SBF1O95248 1867 aa30.24■■■□□ 2.43
PTPN4-207ENST00000460162 COL11A2P13942 1736 aaPredicted RBP30.24■■■□□ 2.43
PTPN4-207ENST00000460162 USP16Q9Y5T5 823 aa30.22■■■□□ 2.43
PTPN4-207ENST00000460162 CAMTA2O94983 1202 aa30.21■■■□□ 2.43
PTPN4-207ENST00000460162 C9orf131Q5VYM1 1079 aa30.21■■■□□ 2.43
PTPN4-207ENST00000460162 PLEKHF1Q96S99 279 aa30.21■■■□□ 2.43
PTPN4-207ENST00000460162 PRAMEF22A3QJZ6 481 aa30.2■■■□□ 2.43
PTPN4-207ENST00000460162 KIF3CO14782 793 aa30.2■■■□□ 2.43
PTPN4-207ENST00000460162 TAF7Q15545 349 aaPredicted RBP30.2■■■□□ 2.43
PTPN4-207ENST00000460162 DZIP3Q86Y13 1208 aaKnown RBP30.2■■■□□ 2.43
PTPN4-207ENST00000460162 C2CD5Q86YS7 1000 aa30.19■■■□□ 2.42
PTPN4-207ENST00000460162 PNNQ9H307 717 aaKnown RBP30.19■■■□□ 2.42
PTPN4-207ENST00000460162 H0YIN7 160 aa30.18■■■□□ 2.42
PTPN4-207ENST00000460162 PDZRN3Q9UPQ7 1066 aa30.18■■■□□ 2.42
PTPN4-207ENST00000460162 RALBP1Q15311 655 aa30.17■■■□□ 2.42
PTPN4-207ENST00000460162 PRR5LQ6MZQ0 368 aa30.17■■■□□ 2.42
PTPN4-207ENST00000460162 TTLL6Q8N841 843 aa30.17■■■□□ 2.42
PTPN4-207ENST00000460162 PNISRQ8TF01 805 aaKnown RBP30.17■■■□□ 2.42
PTPN4-207ENST00000460162 MAPK8IP3Q9UPT6 1336 aa30.17■■■□□ 2.42
PTPN4-207ENST00000460162 NFE2L2Q16236 605 aa30.16■■■□□ 2.42
PTPN4-207ENST00000460162 SETDB2Q96T68 719 aa30.16■■■□□ 2.42
PTPN4-207ENST00000460162 BRIP1Q9BX63 1249 aa30.16■■■□□ 2.42
PTPN4-207ENST00000460162 RNF181Q9P0P0 153 aa30.16■■■□□ 2.42
PTPN4-207ENST00000460162 TNRC6CQ9HCJ0 1690 aaKnown RBP30.16■■■□□ 2.42
PTPN4-207ENST00000460162 PIP4K2AP48426 406 aaPredicted RBP30.15■■■□□ 2.42
PTPN4-207ENST00000460162 ARFGEF2Q9Y6D5 1785 aa30.15■■■□□ 2.42
PTPN4-207ENST00000460162 TIAM2Q8IVF5 1701 aa30.14■■■□□ 2.42
PTPN4-207ENST00000460162 RGL2O15211 777 aa30.14■■■□□ 2.42
PTPN4-207ENST00000460162 PDE6BP35913 854 aa30.14■■■□□ 2.42
PTPN4-207ENST00000460162 CNBD1Q8NA66 436 aa30.14■■■□□ 2.42
PTPN4-207ENST00000460162 ZNF652Q9Y2D9 606 aa30.14■■■□□ 2.42
PTPN4-207ENST00000460162 CEP350Q5VT06 3117 aa30.14■■■□□ 2.42
PTPN4-207ENST00000460162 CLEC4GQ6UXB4 293 aa30.13■■■□□ 2.41
PTPN4-207ENST00000460162 ZC3H4Q9UPT8 1303 aaKnown RBP30.12■■■□□ 2.41
PTPN4-207ENST00000460162 NBPF26B4DH59 902 aa30.11■■■□□ 2.41
PTPN4-207ENST00000460162 HSPA6P17066 643 aa30.11■■■□□ 2.41
PTPN4-207ENST00000460162 NBPF10Q6P3W6 841 aaKnown RBP30.11■■■□□ 2.41
PTPN4-207ENST00000460162 NBPF15Q8N660 670 aa30.11■■■□□ 2.41
PTPN4-207ENST00000460162 CACNA1SQ13698 1873 aa30.1■■■□□ 2.41
PTPN4-207ENST00000460162 NPHP1O15259 732 aa30.1■■■□□ 2.41
PTPN4-207ENST00000460162 ST5P78524 1137 aa30.1■■■□□ 2.41
PTPN4-207ENST00000460162 RASSF7Q02833 373 aa30.1■■■□□ 2.41
PTPN4-207ENST00000460162 MIS18AQ9NYP9 233 aa30.1■■■□□ 2.41
PTPN4-207ENST00000460162 KDM2BQ8NHM5 1336 aa30.09■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms