RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 TOM1L2Q6ZVM7 507 aa14.54□□□□□ -0.08
SMPD4-213ENST00000454468 BOLA2Q9H3K6 86 aa14.54□□□□□ -0.08
SMPD4-213ENST00000454468 RNF214Q8ND24 703 aa14.54□□□□□ -0.08
SMPD4-213ENST00000454468 NEUROD6Q96NK8 337 aa14.54□□□□□ -0.08
SMPD4-213ENST00000454468 NAP1L5Q96NT1 182 aaPredicted RBP14.54□□□□□ -0.08
SMPD4-213ENST00000454468 OVOS2A0A0J9YW53 1432 aa14.54□□□□□ -0.08
SMPD4-213ENST00000454468 OVOS2Q6IE36 1432 aa14.54□□□□□ -0.08
SMPD4-213ENST00000454468 PRDM11Q9NQV5 511 aa14.53□□□□□ -0.08
SMPD4-213ENST00000454468 RNMTO43148 476 aaKnown RBP14.53□□□□□ -0.08
SMPD4-213ENST00000454468 AKAP4Q5JQC9 854 aa14.53□□□□□ -0.08
SMPD4-213ENST00000454468 GPATCH3Q96I76 525 aa14.53□□□□□ -0.08
SMPD4-213ENST00000454468 CNTROBQ8N137 903 aa14.53□□□□□ -0.08
SMPD4-213ENST00000454468 PALD1Q9ULE6 856 aa14.53□□□□□ -0.08
SMPD4-213ENST00000454468 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.52□□□□□ -0.08
SMPD4-213ENST00000454468 CABP4P57796 275 aa14.52□□□□□ -0.08
SMPD4-213ENST00000454468 MPNDQ8N594 471 aa14.52□□□□□ -0.08
SMPD4-213ENST00000454468 DNAJC2Q99543 621 aaKnown RBP14.52□□□□□ -0.08
SMPD4-213ENST00000454468 KIF2CQ99661 725 aa14.52□□□□□ -0.08
SMPD4-213ENST00000454468 XRCC6P12956 609 aaKnown RBP eCLIP14.52□□□□□ -0.09
SMPD4-213ENST00000454468 KIF1BPQ96EK5 621 aa14.52□□□□□ -0.09
SMPD4-213ENST00000454468 ESYT1Q9BSJ8 1104 aa14.52□□□□□ -0.09
SMPD4-213ENST00000454468 COPS6Q7L5N1 327 aa14.52□□□□□ -0.09
SMPD4-213ENST00000454468 SNX21Q969T3 373 aa14.52□□□□□ -0.09
SMPD4-213ENST00000454468 TCEANC2Q96MN5 208 aa14.52□□□□□ -0.09
SMPD4-213ENST00000454468 HTATSF1O43719 755 aaKnown RBP14.51□□□□□ -0.09
SMPD4-213ENST00000454468 FOSBP53539 338 aa14.51□□□□□ -0.09
SMPD4-213ENST00000454468 NUCB2P80303 420 aa14.51□□□□□ -0.09
SMPD4-213ENST00000454468 AMOTQ4VCS5 1084 aa14.51□□□□□ -0.09
SMPD4-213ENST00000454468 FSD1Q9BTV5 496 aa14.51□□□□□ -0.09
SMPD4-213ENST00000454468 NDUFB9Q9Y6M9 179 aa14.51□□□□□ -0.09
SMPD4-213ENST00000454468 CRB1P82279 1406 aa14.51□□□□□ -0.09
SMPD4-213ENST00000454468 XAGE3Q8WTP9 111 aa14.51□□□□□ -0.09
SMPD4-213ENST00000454468 RBM27Q9P2N5 1060 aaKnown RBP14.51□□□□□ -0.09
SMPD4-213ENST00000454468 SOS1Q07889 1333 aaPredicted RBP14.51□□□□□ -0.09
SMPD4-213ENST00000454468 KIF20BQ96Q89 1820 aa14.51□□□□□ -0.09
SMPD4-213ENST00000454468 BAG4O95429 457 aaKnown RBP14.5□□□□□ -0.09
SMPD4-213ENST00000454468 CHMP4AQ9BY43 222 aa14.5□□□□□ -0.09
SMPD4-213ENST00000454468 ZMYND15Q9H091 742 aa14.5□□□□□ -0.09
SMPD4-213ENST00000454468 CHMLP26374 656 aa14.5□□□□□ -0.09
SMPD4-213ENST00000454468 GRPEL1Q9HAV7 217 aa14.5□□□□□ -0.09
SMPD4-213ENST00000454468 UBE3BQ7Z3V4 1068 aa14.49□□□□□ -0.09
SMPD4-213ENST00000454468 TMX3Q96JJ7 454 aa14.49□□□□□ -0.09
SMPD4-213ENST00000454468 VPS37CA5D8V6 355 aaPredicted RBP14.49□□□□□ -0.09
SMPD4-213ENST00000454468 PRPF40BQ6NWY9 871 aaKnown RBP14.49□□□□□ -0.09
SMPD4-213ENST00000454468 CEP170BQ9Y4F5 1589 aaPredicted RBP14.49□□□□□ -0.09
SMPD4-213ENST00000454468 PPFIA3O75145 1194 aa14.49□□□□□ -0.09
SMPD4-213ENST00000454468 USP31Q70CQ4 1352 aa14.48□□□□□ -0.09
SMPD4-213ENST00000454468 TECPR2O15040 1411 aa14.48□□□□□ -0.09
SMPD4-213ENST00000454468 FAM177BA6PVY3 158 aa14.48□□□□□ -0.09
SMPD4-213ENST00000454468 STK3Q13188 491 aa14.48□□□□□ -0.09
SMPD4-213ENST00000454468 HSP90AB4PQ58FF6 505 aa14.48□□□□□ -0.09
SMPD4-213ENST00000454468 PTMAP06454 111 aaKnown RBP14.48□□□□□ -0.09
SMPD4-213ENST00000454468 ZBTB3Q9H5J0 574 aa14.48□□□□□ -0.09
SMPD4-213ENST00000454468 C19orf44Q9H6X5 657 aa14.48□□□□□ -0.09
SMPD4-213ENST00000454468 RAB3GAP1Q15042 981 aa14.48□□□□□ -0.09
SMPD4-213ENST00000454468 CASTP20810 708 aaKnown RBP14.47□□□□□ -0.09
SMPD4-213ENST00000454468 GORABQ5T7V8 394 aa14.47□□□□□ -0.09
SMPD4-213ENST00000454468 JAKMIP1Q96N16 626 aaKnown RBP14.47□□□□□ -0.09
SMPD4-213ENST00000454468 CIZ1Q9ULV3 898 aaPredicted RBP14.47□□□□□ -0.09
SMPD4-213ENST00000454468 ARHGEF25Q86VW2 580 aa14.47□□□□□ -0.09
SMPD4-213ENST00000454468 USP16Q9Y5T5 823 aa14.47□□□□□ -0.09
SMPD4-213ENST00000454468 SKOR2Q2VWA4 1001 aaPredicted RBP14.47□□□□□ -0.09
SMPD4-213ENST00000454468 KSR2Q6VAB6 950 aa14.47□□□□□ -0.09
SMPD4-213ENST00000454468 ZNF496Q96IT1 587 aaPredicted RBP14.47□□□□□ -0.09
SMPD4-213ENST00000454468 BICC1Q9H694 974 aaKnown RBP14.47□□□□□ -0.09
SMPD4-213ENST00000454468 MRE11P49959 708 aa14.46□□□□□ -0.09
SMPD4-213ENST00000454468 EDC3Q96F86 508 aaKnown RBP14.46□□□□□ -0.09
SMPD4-213ENST00000454468 GIGYF1O75420 1035 aaPredicted RBP14.46□□□□□ -0.09
SMPD4-213ENST00000454468 HSP90B1P14625 803 aaKnown RBP14.46□□□□□ -0.09
SMPD4-213ENST00000454468 TAF7LQ5H9L4 462 aa14.46□□□□□ -0.09
SMPD4-213ENST00000454468 A0A087WZG4 1122 aa14.45□□□□□ -0.1
SMPD4-213ENST00000454468 FIBPO43427 364 aa14.45□□□□□ -0.1
SMPD4-213ENST00000454468 BEND3Q5T5X7 828 aa14.45□□□□□ -0.1
SMPD4-213ENST00000454468 RUFY2Q8WXA3 655 aa14.45□□□□□ -0.1
SMPD4-213ENST00000454468 GRM8O00222 908 aa14.45□□□□□ -0.1
SMPD4-213ENST00000454468 ZKSCAN1P17029 563 aaPredicted RBP14.45□□□□□ -0.1
SMPD4-213ENST00000454468 ZNF790Q6PG37 636 aa14.45□□□□□ -0.1
SMPD4-213ENST00000454468 SMC3Q9UQE7 1217 aa14.45□□□□□ -0.1
SMPD4-213ENST00000454468 ATP10DQ9P241 1426 aa14.45□□□□□ -0.1
SMPD4-213ENST00000454468 CCDC83Q8IWF9 413 aa14.44□□□□□ -0.1
SMPD4-213ENST00000454468 SUCLG2Q96I99 432 aa14.44□□□□□ -0.1
SMPD4-213ENST00000454468 HDAC5Q9UQL6 1122 aa14.44□□□□□ -0.1
SMPD4-213ENST00000454468 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.44□□□□□ -0.1
SMPD4-213ENST00000454468 RAB11FIP3O75154 756 aa14.44□□□□□ -0.1
SMPD4-213ENST00000454468 NASPP49321 788 aaPredicted RBP14.44□□□□□ -0.1
SMPD4-213ENST00000454468 FERMT3Q86UX7 667 aa14.44□□□□□ -0.1
SMPD4-213ENST00000454468 HYPKQ9NX55 129 aa14.44□□□□□ -0.1
SMPD4-213ENST00000454468 GLRX3O76003 335 aaKnown RBP14.43□□□□□ -0.1
SMPD4-213ENST00000454468 ANKRD13DQ6ZTN6 518 aa14.43□□□□□ -0.1
SMPD4-213ENST00000454468 IFNL2Q8IZJ0 200 aa14.43□□□□□ -0.1
SMPD4-213ENST00000454468 ECHDC1Q9NTX5 307 aa14.43□□□□□ -0.1
SMPD4-213ENST00000454468 SYCE3A1L190 88 aa14.43□□□□□ -0.1
SMPD4-213ENST00000454468 IL25Q9H293 177 aa14.43□□□□□ -0.1
SMPD4-213ENST00000454468 LARP1Q6PKG0 1096 aaKnown RBP14.43□□□□□ -0.1
SMPD4-213ENST00000454468 GAS2L3Q86XJ1 694 aa14.43□□□□□ -0.1
SMPD4-213ENST00000454468 NECAB1Q8N987 351 aa14.43□□□□□ -0.1
SMPD4-213ENST00000454468 SSH3Q8TE77 659 aa14.42□□□□□ -0.1
SMPD4-213ENST00000454468 RIMS1Q86UR5 1692 aaKnown RBP14.42□□□□□ -0.1
SMPD4-213ENST00000454468 KDM4AO75164 1064 aa14.42□□□□□ -0.1
SMPD4-213ENST00000454468 NRXN3Q9Y4C0 1643 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms