RNA–Protein interactions for RNA: ENST00000448310.1

CBX4-202, Transcript of chromobox 4, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene CBX4, Length 718 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-202ENST00000448310 VSIG10Q8N0Z9 540 aa38.04■■■■□ 3.68
CBX4-202ENST00000448310 IL17REQ8NFR9 667 aa38.04■■■■□ 3.68
CBX4-202ENST00000448310 GAS2L2Q8NHY3 880 aa38.04■■■■□ 3.68
CBX4-202ENST00000448310 AFDNP55196 1824 aaKnown RBP38.03■■■■□ 3.68
CBX4-202ENST00000448310 GNAT3A8MTJ3 354 aa38.03■■■■□ 3.68
CBX4-202ENST00000448310 TTC5Q8N0Z6 440 aa38.03■■■■□ 3.68
CBX4-202ENST00000448310 TEFQ10587 303 aa38.01■■■■□ 3.68
CBX4-202ENST00000448310 NARFQ9UHQ1 456 aa38.01■■■■□ 3.68
CBX4-202ENST00000448310 CANXP27824 592 aaKnown RBP38■■■■□ 3.67
CBX4-202ENST00000448310 CHRNA5P30532 468 aa37.99■■■■□ 3.67
CBX4-202ENST00000448310 CFAP53Q96M91 514 aa37.99■■■■□ 3.67
CBX4-202ENST00000448310 PIM2Q9P1W9 311 aa37.99■■■■□ 3.67
CBX4-202ENST00000448310 PHACTR3Q96KR7 559 aa37.98■■■■□ 3.67
CBX4-202ENST00000448310 PRKAR2BP31323 418 aa37.97■■■■□ 3.67
CBX4-202ENST00000448310 NFIXQ14938 502 aa37.97■■■■□ 3.67
CBX4-202ENST00000448310 ZNF496Q96IT1 587 aaPredicted RBP37.97■■■■□ 3.67
CBX4-202ENST00000448310 BCL2L12Q9HB09 334 aa37.97■■■■□ 3.67
CBX4-202ENST00000448310 RSPH6AQ9H0K4 717 aa37.96■■■■□ 3.67
CBX4-202ENST00000448310 ZNF790Q6PG37 636 aa37.95■■■■□ 3.67
CBX4-202ENST00000448310 NRXN2Q9P2S2 1712 aa37.94■■■■□ 3.66
CBX4-202ENST00000448310 STARD3NLO95772 234 aa37.93■■■■□ 3.66
CBX4-202ENST00000448310 DALRD3Q5D0E6 543 aaKnown RBP37.93■■■■□ 3.66
CBX4-202ENST00000448310 HEG1Q9ULI3 1381 aa37.93■■■■□ 3.66
CBX4-202ENST00000448310 PPP2R1AP30153 589 aa37.92■■■■□ 3.66
CBX4-202ENST00000448310 KIF3CO14782 793 aa37.9■■■■□ 3.66
CBX4-202ENST00000448310 CEMIPQ8WUJ3 1361 aa37.9■■■■□ 3.66
CBX4-202ENST00000448310 EIF5P55010 431 aaKnown RBP37.89■■■■□ 3.66
CBX4-202ENST00000448310 NUDCQ9Y266 331 aa37.89■■■■□ 3.66
CBX4-202ENST00000448310 CEP350Q5VT06 3117 aa37.87■■■■□ 3.65
CBX4-202ENST00000448310 KCNQ3O43525 872 aa37.87■■■■□ 3.65
CBX4-202ENST00000448310 SERPINB2P05120 415 aa37.87■■■■□ 3.65
CBX4-202ENST00000448310 U2AF1L5P0DN76 240 aaPredicted RBP37.87■■■■□ 3.65
CBX4-202ENST00000448310 U2AF1Q01081 240 aaKnown RBP eCLIP37.87■■■■□ 3.653e-8■■■■□ 20
CBX4-202ENST00000448310 C9orf131Q5VYM1 1079 aa37.86■■■■□ 3.65
CBX4-202ENST00000448310 ZNF330Q9Y3S2 320 aaPredicted RBP37.86■■■■□ 3.65
CBX4-202ENST00000448310 BICDL1Q6ZP65 573 aa37.85■■■■□ 3.65
CBX4-202ENST00000448310 FMNL2Q96PY5 1086 aa37.85■■■■□ 3.65
CBX4-202ENST00000448310 DLEC1Q9Y238 1755 aa37.85■■■■□ 3.65
CBX4-202ENST00000448310 SCN7AQ01118 1682 aa37.85■■■■□ 3.65
CBX4-202ENST00000448310 TEX13AQ9BXU3 409 aaPredicted RBP37.84■■■■□ 3.65
CBX4-202ENST00000448310 SBF1O95248 1867 aa37.84■■■■□ 3.65
CBX4-202ENST00000448310 A0A087WZG4 1122 aa37.83■■■■□ 3.65
CBX4-202ENST00000448310 BTBD11A6QL63 1104 aa37.83■■■■□ 3.65
CBX4-202ENST00000448310 CARMIL3Q8ND23 1372 aa37.82■■■■□ 3.65
CBX4-202ENST00000448310 TBC1D2BQ9UPU7 963 aa37.81■■■■□ 3.64
CBX4-202ENST00000448310 A1BGP04217 495 aa37.8■■■■□ 3.64
CBX4-202ENST00000448310 HSPA6P17066 643 aa37.8■■■■□ 3.64
CBX4-202ENST00000448310 TBC1D9BQ66K14 1250 aa37.79■■■■□ 3.64
CBX4-202ENST00000448310 MCM10Q7L590 875 aa37.79■■■■□ 3.64
CBX4-202ENST00000448310 NMRK2Q9NPI5 230 aa37.79■■■■□ 3.64
CBX4-202ENST00000448310 ANKRD31Q8N7Z5 1873 aa37.77■■■■□ 3.64
CBX4-202ENST00000448310 IL6STP40189 918 aaPredicted RBP37.77■■■■□ 3.64
CBX4-202ENST00000448310 RNF181Q9P0P0 153 aa37.77■■■■□ 3.64
CBX4-202ENST00000448310 RTF1Q92541 710 aaKnown RBP37.76■■■■□ 3.64
CBX4-202ENST00000448310 DCTN1Q14203 1278 aa37.75■■■■□ 3.63
CBX4-202ENST00000448310 C2CD5Q86YS7 1000 aa37.75■■■■□ 3.63
CBX4-202ENST00000448310 PRAMEF22A3QJZ6 481 aa37.73■■■■□ 3.63
CBX4-202ENST00000448310 USP16Q9Y5T5 823 aa37.73■■■■□ 3.63
CBX4-202ENST00000448310 BCORQ6W2J9 1755 aa37.73■■■■□ 3.63
CBX4-202ENST00000448310 PIP4K2AP48426 406 aaPredicted RBP37.72■■■■□ 3.63
CBX4-202ENST00000448310 RASSF7Q02833 373 aa37.72■■■■□ 3.63
CBX4-202ENST00000448310 CCDC24Q8N4L8 307 aa37.71■■■■□ 3.63
CBX4-202ENST00000448310 NPM2Q86SE8 214 aaKnown RBP37.7■■■■□ 3.63
CBX4-202ENST00000448310 H0YIN7 160 aa37.69■■■■□ 3.62
CBX4-202ENST00000448310 TTLL6Q8N841 843 aa37.69■■■■□ 3.62
CBX4-202ENST00000448310 COL11A2P13942 1736 aaPredicted RBP37.69■■■■□ 3.62
CBX4-202ENST00000448310 DLG5Q8TDM6 1919 aa37.69■■■■□ 3.62
CBX4-202ENST00000448310 CCDC88AQ3V6T2 1871 aa37.69■■■■□ 3.62
CBX4-202ENST00000448310 TOMM70O94826 608 aa37.68■■■■□ 3.62
CBX4-202ENST00000448310 CAMTA2O94983 1202 aa37.68■■■■□ 3.62
CBX4-202ENST00000448310 PRR5LQ6MZQ0 368 aa37.67■■■■□ 3.62
CBX4-202ENST00000448310 DZIP3Q86Y13 1208 aaKnown RBP37.66■■■■□ 3.62
CBX4-202ENST00000448310 SNRPA1P09661 255 aaKnown RBP37.64■■■■□ 3.62
CBX4-202ENST00000448310 HTATSF1O43719 755 aaKnown RBP37.63■■■■□ 3.61
CBX4-202ENST00000448310 PRELPP51888 382 aa37.63■■■■□ 3.61
CBX4-202ENST00000448310 ZNF622Q969S3 477 aaKnown RBP eCLIP37.62■■■■□ 3.615e-7■■□□□ 14.4
CBX4-202ENST00000448310 SETDB2Q96T68 719 aa37.62■■■■□ 3.61
CBX4-202ENST00000448310 BRIP1Q9BX63 1249 aa37.62■■■■□ 3.61
CBX4-202ENST00000448310 KDM2BQ8NHM5 1336 aa37.61■■■■□ 3.61
CBX4-202ENST00000448310 CACNA1SQ13698 1873 aa37.6■■■■□ 3.61
CBX4-202ENST00000448310 TNRC6CQ9HCJ0 1690 aaKnown RBP37.6■■■■□ 3.61
CBX4-202ENST00000448310 PDE6BP35913 854 aa37.6■■■■□ 3.61
CBX4-202ENST00000448310 MIS18AQ9NYP9 233 aa37.6■■■■□ 3.61
CBX4-202ENST00000448310 CNBD1Q8NA66 436 aa37.59■■■■□ 3.61
CBX4-202ENST00000448310 TIAM2Q8IVF5 1701 aa37.58■■■■□ 3.61
CBX4-202ENST00000448310 NPHP1O15259 732 aa37.58■■■■□ 3.61
CBX4-202ENST00000448310 LMNB1P20700 586 aa37.58■■■■□ 3.61
CBX4-202ENST00000448310 C16orf71Q8IYS4 520 aaPredicted RBP37.58■■■■□ 3.61
CBX4-202ENST00000448310 RRAGCQ9HB90 399 aa37.58■■■■□ 3.61
CBX4-202ENST00000448310 ZNF219Q9P2Y4 722 aaPredicted RBP37.58■■■■□ 3.61
CBX4-202ENST00000448310 NFKBIEO00221 500 aa37.57■■■■□ 3.6
CBX4-202ENST00000448310 TAF7Q15545 349 aaPredicted RBP37.57■■■■□ 3.6
CBX4-202ENST00000448310 NBPF26B4DH59 902 aa37.56■■■■□ 3.6
CBX4-202ENST00000448310 NBPF10Q6P3W6 841 aaKnown RBP37.56■■■■□ 3.6
CBX4-202ENST00000448310 NBPF15Q8N660 670 aa37.56■■■■□ 3.6
CBX4-202ENST00000448310 LAMB4A4D0S4 1761 aa37.55■■■■□ 3.6
CBX4-202ENST00000448310 PDZRN3Q9UPQ7 1066 aa37.55■■■■□ 3.6
CBX4-202ENST00000448310 KDM3BQ7LBC6 1761 aa37.55■■■■□ 3.6
CBX4-202ENST00000448310 NEFMP07197 916 aa37.54■■■■□ 3.6
CBX4-202ENST00000448310 RBM46Q8TBY0 533 aaKnown RBP37.54■■■■□ 3.6
Retrieved 100 of 20,778 RNA–protein pairs in 102.9 ms