RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 FKBP5Q13451 457 aaPredicted RBP10.29□□□□□ -0.76
NIPBL-202ENST00000448238 SCLT1Q96NL6 688 aa10.29□□□□□ -0.76
NIPBL-202ENST00000448238 INPP1P49441 399 aa10.28□□□□□ -0.76
NIPBL-202ENST00000448238 TAF7Q15545 349 aaPredicted RBP10.28□□□□□ -0.76
NIPBL-202ENST00000448238 CAVIN2O95810 425 aa10.28□□□□□ -0.76
NIPBL-202ENST00000448238 GABPB2Q8TAK5 448 aaPredicted RBP10.28□□□□□ -0.76
NIPBL-202ENST00000448238 STXBP4Q6ZWJ1 553 aa10.28□□□□□ -0.76
NIPBL-202ENST00000448238 FMNL3Q8IVF7 1028 aa10.28□□□□□ -0.76
NIPBL-202ENST00000448238 CCDC170Q8IYT3 715 aa10.28□□□□□ -0.76
NIPBL-202ENST00000448238 CCNB3Q8WWL7 1395 aa10.28□□□□□ -0.76
NIPBL-202ENST00000448238 SYF2O95926 243 aaKnown RBP10.28□□□□□ -0.76
NIPBL-202ENST00000448238 SPAG5Q96R06 1193 aa10.28□□□□□ -0.76
NIPBL-202ENST00000448238 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.28□□□□□ -0.76
NIPBL-202ENST00000448238 ANO10Q9NW15 660 aa10.28□□□□□ -0.76
NIPBL-202ENST00000448238 CEBPZQ03701 1054 aaKnown RBP10.28□□□□□ -0.76
NIPBL-202ENST00000448238 AFAP1L2Q8N4X5 818 aa10.28□□□□□ -0.76
NIPBL-202ENST00000448238 CCDC114Q96M63 670 aa10.28□□□□□ -0.76
NIPBL-202ENST00000448238 HMGB2P26583 209 aaKnown RBP10.28□□□□□ -0.76
NIPBL-202ENST00000448238 VPS52Q8N1B4 723 aa10.28□□□□□ -0.76
NIPBL-202ENST00000448238 CEP162Q5TB80 1403 aa10.28□□□□□ -0.76
NIPBL-202ENST00000448238 GAS8O95995 478 aa10.28□□□□□ -0.76
NIPBL-202ENST00000448238 DACT3Q96B18 629 aaPredicted RBP10.28□□□□□ -0.76
NIPBL-202ENST00000448238 CCDC171Q6TFL3 1326 aa10.27□□□□□ -0.76
NIPBL-202ENST00000448238 HSPA5P11021 654 aaKnown RBP10.27□□□□□ -0.76
NIPBL-202ENST00000448238 NEDD9Q14511 834 aa10.27□□□□□ -0.76
NIPBL-202ENST00000448238 RUFY3Q7L099 469 aa10.27□□□□□ -0.76
NIPBL-202ENST00000448238 CCDC82Q8N4S0 544 aa10.27□□□□□ -0.76
NIPBL-202ENST00000448238 NUP88Q99567 741 aaPredicted RBP10.27□□□□□ -0.76
NIPBL-202ENST00000448238 MTMR7Q9Y216 660 aa10.27□□□□□ -0.76
NIPBL-202ENST00000448238 PYM1Q9BRP8 204 aaKnown RBP10.27□□□□□ -0.76
NIPBL-202ENST00000448238 SAMD15Q9P1V8 674 aa10.27□□□□□ -0.76
NIPBL-202ENST00000448238 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.27□□□□□ -0.761e-7■■■■□ 19.6
NIPBL-202ENST00000448238 MICALL1Q8N3F8 863 aa10.27□□□□□ -0.77
NIPBL-202ENST00000448238 PSPC1Q8WXF1 523 aaKnown RBP10.27□□□□□ -0.77
NIPBL-202ENST00000448238 CCT6BQ92526 530 aa10.27□□□□□ -0.77
NIPBL-202ENST00000448238 CIZ1Q9ULV3 898 aaPredicted RBP10.27□□□□□ -0.77
NIPBL-202ENST00000448238 ZBED9Q6R2W3 1325 aa10.27□□□□□ -0.77
NIPBL-202ENST00000448238 CASTP20810 708 aaKnown RBP10.27□□□□□ -0.77
NIPBL-202ENST00000448238 NOP2P46087 812 aaKnown RBP10.27□□□□□ -0.77
NIPBL-202ENST00000448238 RAP1GDS1P52306 607 aa10.27□□□□□ -0.77
NIPBL-202ENST00000448238 PDCD2Q16342 344 aaPredicted RBP10.27□□□□□ -0.77
NIPBL-202ENST00000448238 LARP1BQ659C4 914 aaKnown RBP10.27□□□□□ -0.77
NIPBL-202ENST00000448238 ZNF710Q8N1W2 664 aa10.27□□□□□ -0.77
NIPBL-202ENST00000448238 ATRIPQ8WXE1 791 aa10.27□□□□□ -0.77
NIPBL-202ENST00000448238 ATP2B2Q01814 1243 aa10.27□□□□□ -0.77
NIPBL-202ENST00000448238 ATP5DP30049 168 aa10.27□□□□□ -0.77
NIPBL-202ENST00000448238 KRT32Q14532 448 aa10.27□□□□□ -0.77
NIPBL-202ENST00000448238 CCDC63Q8NA47 563 aa10.27□□□□□ -0.77
NIPBL-202ENST00000448238 PFDN4Q9NQP4 134 aa10.26□□□□□ -0.77
NIPBL-202ENST00000448238 MYBBP1AQ9BQG0 1328 aaKnown RBP10.26□□□□□ -0.77
NIPBL-202ENST00000448238 A0A1B0GUL7 405 aa10.26□□□□□ -0.77
NIPBL-202ENST00000448238 PRIMPOLQ96LW4 560 aa10.26□□□□□ -0.77
NIPBL-202ENST00000448238 USP25Q9UHP3 1055 aa10.26□□□□□ -0.77
NIPBL-202ENST00000448238 CPLX4Q7Z7G2 160 aa10.26□□□□□ -0.77
NIPBL-202ENST00000448238 USP37Q86T82 979 aa10.26□□□□□ -0.77
NIPBL-202ENST00000448238 SEC62Q99442 399 aaKnown RBP10.26□□□□□ -0.77
NIPBL-202ENST00000448238 SLC4A8Q2Y0W8 1093 aa10.26□□□□□ -0.77
NIPBL-202ENST00000448238 BICD1Q96G01 975 aa10.26□□□□□ -0.77
NIPBL-202ENST00000448238 UBTFL1P0CB47 393 aaPredicted RBP10.26□□□□□ -0.77
NIPBL-202ENST00000448238 PRPF4BQ13523 1007 aaKnown RBP10.26□□□□□ -0.77
NIPBL-202ENST00000448238 CCDC38Q502W7 563 aa10.26□□□□□ -0.77
NIPBL-202ENST00000448238 TRERF1Q96PN7 1200 aa10.26□□□□□ -0.77
NIPBL-202ENST00000448238 PALM3A6NDB9 673 aaPredicted RBP10.25□□□□□ -0.77
NIPBL-202ENST00000448238 TDRD12Q587J7 1177 aaKnown RBP10.25□□□□□ -0.77
NIPBL-202ENST00000448238 COG3Q96JB2 828 aa10.25□□□□□ -0.77
NIPBL-202ENST00000448238 PPP6R1Q9UPN7 881 aa10.25□□□□□ -0.77
NIPBL-202ENST00000448238 LTV1Q96GA3 475 aaPredicted RBP10.25□□□□□ -0.77
NIPBL-202ENST00000448238 JADE2Q9NQC1 790 aa10.25□□□□□ -0.77
NIPBL-202ENST00000448238 CTNNA3Q9UI47 895 aa10.25□□□□□ -0.77
NIPBL-202ENST00000448238 GIPC1O14908 333 aa10.25□□□□□ -0.77
NIPBL-202ENST00000448238 AKAP2Q9Y2D5 859 aa10.25□□□□□ -0.77
NIPBL-202ENST00000448238 TUBB4AP04350 444 aa10.25□□□□□ -0.77
NIPBL-202ENST00000448238 EIF2S2P20042 333 aaKnown RBP10.25□□□□□ -0.77
NIPBL-202ENST00000448238 MAP3K21Q5TCX8 1036 aa10.25□□□□□ -0.77
NIPBL-202ENST00000448238 CCDC129Q6ZRS4 1044 aa10.25□□□□□ -0.77
NIPBL-202ENST00000448238 SDCCAG8Q86SQ7 713 aaPredicted RBP10.25□□□□□ -0.77
NIPBL-202ENST00000448238 BAZ1BQ9UIG0 1483 aaKnown RBP10.25□□□□□ -0.77
NIPBL-202ENST00000448238 GOLGA4Q13439 2230 aaKnown RBP10.25□□□□□ -0.77
NIPBL-202ENST00000448238 HOMEZQ8IX15 550 aa10.25□□□□□ -0.77
NIPBL-202ENST00000448238 ATP2A3Q93084 1043 aa10.25□□□□□ -0.77
NIPBL-202ENST00000448238 RIC3Q7Z5B4 369 aa10.25□□□□□ -0.77
NIPBL-202ENST00000448238 PPP4R3BQ5MIZ7 849 aa10.25□□□□□ -0.77
NIPBL-202ENST00000448238 SEC63Q9UGP8 760 aaKnown RBP10.25□□□□□ -0.77
NIPBL-202ENST00000448238 ANKRD24Q8TF21 1146 aa10.24□□□□□ -0.77
NIPBL-202ENST00000448238 TBC1D31Q96DN5 1066 aa10.24□□□□□ -0.77
NIPBL-202ENST00000448238 RASSF4Q9H2L5 321 aa10.24□□□□□ -0.77
NIPBL-202ENST00000448238 RSPH14Q9UHP6 348 aa10.24□□□□□ -0.77
NIPBL-202ENST00000448238 COG6Q9Y2V7 657 aa10.24□□□□□ -0.77
NIPBL-202ENST00000448238 NOC2LQ9Y3T9 749 aaKnown RBP10.24□□□□□ -0.77
NIPBL-202ENST00000448238 SPC25Q9HBM1 224 aa10.24□□□□□ -0.77
NIPBL-202ENST00000448238 PRDM10Q9NQV6 1147 aa10.24□□□□□ -0.77
NIPBL-202ENST00000448238 THEGQ9P2T0 379 aa10.24□□□□□ -0.77
NIPBL-202ENST00000448238 GNAI3P08754 354 aa10.24□□□□□ -0.77
NIPBL-202ENST00000448238 DBN1Q16643 649 aa10.24□□□□□ -0.77
NIPBL-202ENST00000448238 ARMC9Q7Z3E5 817 aa10.24□□□□□ -0.77
NIPBL-202ENST00000448238 PIP4K2BP78356 416 aa10.24□□□□□ -0.77
NIPBL-202ENST00000448238 TBC1D5Q92609 795 aa10.24□□□□□ -0.77
NIPBL-202ENST00000448238 ZSCAN31Q96LW9 406 aaPredicted RBP10.24□□□□□ -0.77
NIPBL-202ENST00000448238 CCDC196A0A1B0GTZ2 297 aa10.24□□□□□ -0.77
NIPBL-202ENST00000448238 ANKRD30AQ9BXX3 1397 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms