RNA–Protein interactions for RNA: ENST00000447439.6

KLHL3-202, Transcript of kelch like family member 3, humanhuman

TSL 1 (best)

Gene KLHL3, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL3-202ENST00000447439 ORAI2Q96SN7 254 aa11.5□□□□□ -0.57
KLHL3-202ENST00000447439 BTBD11A6QL63 1104 aa11.5□□□□□ -0.57
KLHL3-202ENST00000447439 DDX54Q8TDD1 881 aaKnown RBP11.5□□□□□ -0.57
KLHL3-202ENST00000447439 TRIM44Q96DX7 344 aaPredicted RBP11.5□□□□□ -0.57
KLHL3-202ENST00000447439 FAM208AQ9UK61 1670 aaKnown RBP11.49□□□□□ -0.57
KLHL3-202ENST00000447439 CLEC17AQ6ZS10 378 aa11.49□□□□□ -0.57
KLHL3-202ENST00000447439 RHPN1Q8TCX5 695 aa11.49□□□□□ -0.57
KLHL3-202ENST00000447439 PA2G4Q9UQ80 394 aaKnown RBP11.49□□□□□ -0.57
KLHL3-202ENST00000447439 XRN1Q8IZH2 1706 aaKnown RBP11.49□□□□□ -0.57
KLHL3-202ENST00000447439 PRIM1P49642 420 aaKnown RBP11.49□□□□□ -0.57
KLHL3-202ENST00000447439 TEFQ10587 303 aa11.49□□□□□ -0.57
KLHL3-202ENST00000447439 CWF19L2Q2TBE0 894 aaKnown RBP11.49□□□□□ -0.57
KLHL3-202ENST00000447439 SSH3Q8TE77 659 aa11.49□□□□□ -0.57
KLHL3-202ENST00000447439 IP6K1Q92551 441 aa11.49□□□□□ -0.57
KLHL3-202ENST00000447439 RBSNQ9H1K0 784 aa11.49□□□□□ -0.57
KLHL3-202ENST00000447439 SPG7Q9UQ90 795 aa11.49□□□□□ -0.57
KLHL3-202ENST00000447439 ESPNB1AK53 854 aa11.48□□□□□ -0.57
KLHL3-202ENST00000447439 OS9Q13438 667 aaPredicted RBP11.48□□□□□ -0.57
KLHL3-202ENST00000447439 CWC27Q6UX04 472 aaKnown RBP11.48□□□□□ -0.57
KLHL3-202ENST00000447439 MARF1Q9Y4F3 1742 aaKnown RBP11.48□□□□□ -0.57
KLHL3-202ENST00000447439 LRRC37A3O60309 1634 aa11.48□□□□□ -0.57
KLHL3-202ENST00000447439 AIMP1Q12904 312 aaKnown RBP11.48□□□□□ -0.57
KLHL3-202ENST00000447439 BEND3Q5T5X7 828 aa11.48□□□□□ -0.57
KLHL3-202ENST00000447439 PI4K2BQ8TCG2 481 aa11.48□□□□□ -0.57
KLHL3-202ENST00000447439 DNAAF4Q8WXU2 420 aa11.48□□□□□ -0.57
KLHL3-202ENST00000447439 CWC22Q9HCG8 908 aaKnown RBP11.48□□□□□ -0.57
KLHL3-202ENST00000447439 TMEM63CQ9P1W3 806 aa11.48□□□□□ -0.57
KLHL3-202ENST00000447439 STAP2Q9UGK3 403 aa11.48□□□□□ -0.57
KLHL3-202ENST00000447439 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.48□□□□□ -0.57
KLHL3-202ENST00000447439 N4BP2Q86UW6 1770 aaPredicted RBP11.47□□□□□ -0.57
KLHL3-202ENST00000447439 SYCE3A1L190 88 aa11.47□□□□□ -0.57
KLHL3-202ENST00000447439 MCCP23508 829 aa11.47□□□□□ -0.57
KLHL3-202ENST00000447439 USP54Q70EL1 1684 aa11.46□□□□□ -0.57
KLHL3-202ENST00000447439 PTMSP20962 102 aa11.46□□□□□ -0.57
KLHL3-202ENST00000447439 CLCN1P35523 988 aa11.46□□□□□ -0.57
KLHL3-202ENST00000447439 RASEFQ8IZ41 740 aa11.46□□□□□ -0.57
KLHL3-202ENST00000447439 RNF214Q8ND24 703 aa11.46□□□□□ -0.57
KLHL3-202ENST00000447439 AXIN2Q9Y2T1 843 aa11.46□□□□□ -0.57
KLHL3-202ENST00000447439 MAP3K2Q9Y2U5 619 aa11.46□□□□□ -0.57
KLHL3-202ENST00000447439 ADCY9O60503 1353 aa11.46□□□□□ -0.57
KLHL3-202ENST00000447439 ANKARQ7Z5J8 1434 aa11.46□□□□□ -0.58
KLHL3-202ENST00000447439 PIP4K2AP48426 406 aaPredicted RBP11.46□□□□□ -0.58
KLHL3-202ENST00000447439 POLA2Q14181 598 aa11.46□□□□□ -0.58
KLHL3-202ENST00000447439 JARID2Q92833 1246 aaPredicted RBP11.46□□□□□ -0.58
KLHL3-202ENST00000447439 PXDNQ92626 1479 aa11.46□□□□□ -0.58
KLHL3-202ENST00000447439 CEMIPQ8WUJ3 1361 aa11.46□□□□□ -0.58
KLHL3-202ENST00000447439 SLC39A6Q13433 755 aa11.45□□□□□ -0.58
KLHL3-202ENST00000447439 GADD45BO75293 160 aaPredicted RBP11.44□□□□□ -0.58
KLHL3-202ENST00000447439 GCP02774 474 aa11.44□□□□□ -0.58
KLHL3-202ENST00000447439 KLHDC4Q8TBB5 520 aa11.44□□□□□ -0.58
KLHL3-202ENST00000447439 DDX17Q92841 729 aaKnown RBP11.44□□□□□ -0.58
KLHL3-202ENST00000447439 ISY1Q9ULR0 285 aaKnown RBP11.44□□□□□ -0.58
KLHL3-202ENST00000447439 FER1L4A9Z1Z3 1794 aa11.44□□□□□ -0.58
KLHL3-202ENST00000447439 ZC3H6P61129 1189 aaKnown RBP11.44□□□□□ -0.58
KLHL3-202ENST00000447439 COL9A3Q14050 684 aaPredicted RBP11.44□□□□□ -0.58
KLHL3-202ENST00000447439 ANKRD24Q8TF21 1146 aa11.44□□□□□ -0.58
KLHL3-202ENST00000447439 KIF1BPQ96EK5 621 aa11.44□□□□□ -0.58
KLHL3-202ENST00000447439 SIL1Q9H173 461 aa11.44□□□□□ -0.58
KLHL3-202ENST00000447439 C9orf78Q9NZ63 289 aaPredicted RBP11.44□□□□□ -0.58
KLHL3-202ENST00000447439 TUBGCP6Q96RT7 1819 aa11.43□□□□□ -0.58
KLHL3-202ENST00000447439 RNMTO43148 476 aaKnown RBP11.43□□□□□ -0.58
KLHL3-202ENST00000447439 BRD1O95696 1058 aa11.43□□□□□ -0.58
KLHL3-202ENST00000447439 HSPA4P34932 840 aa11.43□□□□□ -0.58
KLHL3-202ENST00000447439 C1orf141Q5JVX7 400 aa11.43□□□□□ -0.58
KLHL3-202ENST00000447439 SNX14Q9Y5W7 946 aa11.43□□□□□ -0.58
KLHL3-202ENST00000447439 LARGE1O95461 756 aa11.43□□□□□ -0.58
KLHL3-202ENST00000447439 ZNF445P59923 1031 aa11.43□□□□□ -0.58
KLHL3-202ENST00000447439 PTH1RQ03431 593 aa11.43□□□□□ -0.58
KLHL3-202ENST00000447439 CUL4AQ13619 759 aa11.43□□□□□ -0.58
KLHL3-202ENST00000447439 AKAP4Q5JQC9 854 aa11.43□□□□□ -0.58
KLHL3-202ENST00000447439 ANKLE2Q86XL3 938 aa11.43□□□□□ -0.58
KLHL3-202ENST00000447439 RGPD2P0DJD1 1756 aa11.43□□□□□ -0.58
KLHL3-202ENST00000447439 CACNA1FO60840 1977 aa11.43□□□□□ -0.58
KLHL3-202ENST00000447439 SGSM2O43147 1006 aa11.43□□□□□ -0.58
KLHL3-202ENST00000447439 LTN1O94822 1766 aa11.43□□□□□ -0.58
KLHL3-202ENST00000447439 MYL6BP14649 208 aa11.43□□□□□ -0.58
KLHL3-202ENST00000447439 PLEKHO1Q53GL0 409 aaPredicted RBP11.43□□□□□ -0.58
KLHL3-202ENST00000447439 MPNDQ8N594 471 aa11.43□□□□□ -0.58
KLHL3-202ENST00000447439 LSG1Q9H089 658 aaKnown RBP11.43□□□□□ -0.58
KLHL3-202ENST00000447439 RAB11FIP3O75154 756 aa11.42□□□□□ -0.58
KLHL3-202ENST00000447439 AK2P54819 239 aa11.42□□□□□ -0.58
KLHL3-202ENST00000447439 CCDC173Q0VFZ6 552 aa11.42□□□□□ -0.58
KLHL3-202ENST00000447439 TLR7Q9NYK1 1049 aaKnown RBP11.42□□□□□ -0.58
KLHL3-202ENST00000447439 NFAT5O94916 1531 aa11.42□□□□□ -0.58
KLHL3-202ENST00000447439 GIGYF1O75420 1035 aaPredicted RBP11.42□□□□□ -0.58
KLHL3-202ENST00000447439 ADCK5Q3MIX3 580 aa11.42□□□□□ -0.58
KLHL3-202ENST00000447439 CNTROBQ8N137 903 aa11.42□□□□□ -0.58
KLHL3-202ENST00000447439 CCDC8Q9H0W5 538 aaPredicted RBP11.42□□□□□ -0.58
KLHL3-202ENST00000447439 AACSQ86V21 672 aa11.41□□□□□ -0.58
KLHL3-202ENST00000447439 SUCLG2Q96I99 432 aa11.41□□□□□ -0.58
KLHL3-202ENST00000447439 BABAM1Q9NWV8 329 aa11.41□□□□□ -0.58
KLHL3-202ENST00000447439 DBF4Q9UBU7 674 aaPredicted RBP11.41□□□□□ -0.58
KLHL3-202ENST00000447439 PXDNLA1KZ92 1463 aa11.41□□□□□ -0.58
KLHL3-202ENST00000447439 RAD50Q92878 1312 aa11.41□□□□□ -0.58
KLHL3-202ENST00000447439 CASTP20810 708 aaKnown RBP11.41□□□□□ -0.58
KLHL3-202ENST00000447439 ANAPC15P60006 121 aa11.41□□□□□ -0.58
KLHL3-202ENST00000447439 PRPF40BQ6NWY9 871 aaKnown RBP11.41□□□□□ -0.58
KLHL3-202ENST00000447439 RUFY3Q7L099 469 aa11.41□□□□□ -0.58
KLHL3-202ENST00000447439 ANP32BQ92688 251 aaKnown RBP11.41□□□□□ -0.58
KLHL3-202ENST00000447439 USP48Q86UV5 1035 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms