RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 MCM10Q7L590 875 aa27.7■■■□□ 2.02
SDC1-205ENST00000447124 NARFQ9UHQ1 456 aa27.7■■■□□ 2.02
SDC1-205ENST00000447124 HEG1Q9ULI3 1381 aa27.7■■■□□ 2.02
SDC1-205ENST00000447124 DCTN1Q14203 1278 aa27.69■■■□□ 2.02
SDC1-205ENST00000447124 BCL2L12Q9HB09 334 aa27.69■■■□□ 2.02
SDC1-205ENST00000447124 BTBD11A6QL63 1104 aa27.68■■■□□ 2.02
SDC1-205ENST00000447124 POLRMTO00411 1230 aaKnown RBP27.68■■■□□ 2.02
SDC1-205ENST00000447124 STARD3NLO95772 234 aa27.68■■■□□ 2.02
SDC1-205ENST00000447124 EIF5P55010 431 aaKnown RBP27.68■■■□□ 2.02
SDC1-205ENST00000447124 UBR2Q8IWV8 1755 aa27.68■■■□□ 2.02
SDC1-205ENST00000447124 KCNA3P22001 575 aa27.67■■■□□ 2.02
SDC1-205ENST00000447124 KIF13BQ9NQT8 1826 aa27.67■■■□□ 2.02
SDC1-205ENST00000447124 COL15A1P39059 1388 aa27.66■■■□□ 2.02
SDC1-205ENST00000447124 FMNL2Q96PY5 1086 aa27.66■■■□□ 2.02
SDC1-205ENST00000447124 TEX13AQ9BXU3 409 aaPredicted RBP27.66■■■□□ 2.02
SDC1-205ENST00000447124 SIPA1L3O60292 1781 aaPredicted RBP27.65■■■□□ 2.02
SDC1-205ENST00000447124 NFIXQ14938 502 aa27.65■■■□□ 2.02
SDC1-205ENST00000447124 KIAA1551Q9HCM1 1747 aa27.64■■■□□ 2.02
SDC1-205ENST00000447124 DDX10Q13206 875 aaKnown RBP27.64■■■□□ 2.02
SDC1-205ENST00000447124 RTF1Q92541 710 aaKnown RBP27.64■■■□□ 2.02
SDC1-205ENST00000447124 PLEKHF1Q96S99 279 aa27.64■■■□□ 2.02
SDC1-205ENST00000447124 HTATSF1O43719 755 aaKnown RBP27.63■■■□□ 2.01
SDC1-205ENST00000447124 A1BGP04217 495 aa27.63■■■□□ 2.01
SDC1-205ENST00000447124 BCS1LQ9Y276 419 aa27.62■■■□□ 2.01
SDC1-205ENST00000447124 USP16Q9Y5T5 823 aa27.62■■■□□ 2.01
SDC1-205ENST00000447124 N4BP2Q86UW6 1770 aaPredicted RBP27.62■■■□□ 2.01
SDC1-205ENST00000447124 PRAMEF22A3QJZ6 481 aa27.61■■■□□ 2.01
SDC1-205ENST00000447124 A0A087WZG4 1122 aa27.58■■■□□ 2.01
SDC1-205ENST00000447124 CHRNA5P30532 468 aa27.58■■■□□ 2.01
SDC1-205ENST00000447124 IL6STP40189 918 aaPredicted RBP27.58■■■□□ 2.01
SDC1-205ENST00000447124 RALBP1Q15311 655 aa27.58■■■□□ 2.01
SDC1-205ENST00000447124 TBC1D2BQ9UPU7 963 aa27.58■■■□□ 2.01
SDC1-205ENST00000447124 SERPINB2P05120 415 aa27.57■■■□□ 2
SDC1-205ENST00000447124 TAF7Q15545 349 aaPredicted RBP27.57■■■□□ 2
SDC1-205ENST00000447124 MIS18AQ9NYP9 233 aa27.57■■■□□ 2
SDC1-205ENST00000447124 PIM2Q9P1W9 311 aa27.56■■■□□ 2
SDC1-205ENST00000447124 ATP10DQ9P241 1426 aa27.56■■■□□ 2
SDC1-205ENST00000447124 BICDL1Q6ZP65 573 aa27.55■■■□□ 2
SDC1-205ENST00000447124 ZNF330Q9Y3S2 320 aaPredicted RBP27.55■■■□□ 2
SDC1-205ENST00000447124 ADCY9O60503 1353 aa27.55■■■□□ 2
SDC1-205ENST00000447124 SNRPA1P09661 255 aaKnown RBP27.54■■■□□ 2
SDC1-205ENST00000447124 PIP4K2AP48426 406 aaPredicted RBP27.54■■■□□ 2
SDC1-205ENST00000447124 C1QTNF8P60827 252 aa27.54■■■□□ 2
SDC1-205ENST00000447124 TBC1D9BQ66K14 1250 aa27.54■■■□□ 2
SDC1-205ENST00000447124 ARHGAP27Q6ZUM4 889 aa27.54■■■□□ 2
SDC1-205ENST00000447124 NFE2L2Q16236 605 aa27.53■■■□□ 2
SDC1-205ENST00000447124 NEFMP07197 916 aa27.52■■■□□ 2
SDC1-205ENST00000447124 GIGYF1O75420 1035 aaPredicted RBP27.51■■□□□ 1.99
SDC1-205ENST00000447124 CAMTA2O94983 1202 aa27.51■■□□□ 1.99
SDC1-205ENST00000447124 DALRD3Q5D0E6 543 aaKnown RBP27.51■■□□□ 1.99
SDC1-205ENST00000447124 THUMPD2Q9BTF0 503 aaKnown RBP27.51■■□□□ 1.99
SDC1-205ENST00000447124 BRCA1P38398 1863 aaKnown RBP27.49■■□□□ 1.99
SDC1-205ENST00000447124 NBPF26B4DH59 902 aa27.49■■□□□ 1.99
SDC1-205ENST00000447124 NBPF10Q6P3W6 841 aaKnown RBP27.49■■□□□ 1.99
SDC1-205ENST00000447124 NBPF15Q8N660 670 aa27.49■■□□□ 1.99
SDC1-205ENST00000447124 AFDNP55196 1824 aaKnown RBP27.48■■□□□ 1.99
SDC1-205ENST00000447124 ZNF526Q8TF50 670 aaPredicted RBP27.48■■□□□ 1.99
SDC1-205ENST00000447124 PNNQ9H307 717 aaKnown RBP27.48■■□□□ 1.99
SDC1-205ENST00000447124 DZIP3Q86Y13 1208 aaKnown RBP27.47■■□□□ 1.99
SDC1-205ENST00000447124 GPBP1L1Q9HC44 474 aaPredicted RBP27.46■■□□□ 1.99
SDC1-205ENST00000447124 NRXN2Q9P2S2 1712 aa27.46■■□□□ 1.99
SDC1-205ENST00000447124 CARMIL3Q8ND23 1372 aa27.46■■□□□ 1.99
SDC1-205ENST00000447124 NPM2Q86SE8 214 aaKnown RBP27.45■■□□□ 1.98
SDC1-205ENST00000447124 CCDC24Q8N4L8 307 aa27.45■■□□□ 1.98
SDC1-205ENST00000447124 PNISRQ8TF01 805 aaKnown RBP27.45■■□□□ 1.98
SDC1-205ENST00000447124 DLG5Q8TDM6 1919 aa27.45■■□□□ 1.98
SDC1-205ENST00000447124 MYBBP1AQ9BQG0 1328 aaKnown RBP27.44■■□□□ 1.98
SDC1-205ENST00000447124 MAPK8IP3Q9UPT6 1336 aa27.44■■□□□ 1.98
SDC1-205ENST00000447124 EIF4A1P60842 406 aaKnown RBP27.43■■□□□ 1.98
SDC1-205ENST00000447124 PRR5LQ6MZQ0 368 aa27.43■■□□□ 1.98
SDC1-205ENST00000447124 C2CD5Q86YS7 1000 aa27.43■■□□□ 1.98
SDC1-205ENST00000447124 RIPK4P57078 832 aa27.41■■□□□ 1.98
SDC1-205ENST00000447124 SETDB2Q96T68 719 aa27.41■■□□□ 1.98
SDC1-205ENST00000447124 C9orf131Q5VYM1 1079 aa27.4■■□□□ 1.98
SDC1-205ENST00000447124 ARFGEF1Q9Y6D6 1849 aa27.39■■□□□ 1.98
SDC1-205ENST00000447124 H0YIN7 160 aa27.39■■□□□ 1.98
SDC1-205ENST00000447124 TMPOP42166 694 aaKnown RBP27.39■■□□□ 1.98
SDC1-205ENST00000447124 CLEC4GQ6UXB4 293 aa27.39■■□□□ 1.98
SDC1-205ENST00000447124 BRIP1Q9BX63 1249 aa27.39■■□□□ 1.98
SDC1-205ENST00000447124 TTLL6Q8N841 843 aa27.38■■□□□ 1.97
SDC1-205ENST00000447124 SCN7AQ01118 1682 aa27.37■■□□□ 1.97
SDC1-205ENST00000447124 CCDC146Q8IYE0 955 aa27.37■■□□□ 1.97
SDC1-205ENST00000447124 KIF3CO14782 793 aa27.36■■□□□ 1.97
SDC1-205ENST00000447124 SENP3-EIF4A1A0A087X0R7 540 aa27.35■■□□□ 1.97
SDC1-205ENST00000447124 HLFQ16534 295 aa27.35■■□□□ 1.97
SDC1-205ENST00000447124 PRKRIP1Q9H875 184 aaPredicted RBP27.35■■□□□ 1.97
SDC1-205ENST00000447124 RRP7AQ9Y3A4 280 aaKnown RBP27.35■■□□□ 1.97
SDC1-205ENST00000447124 PDE6BP35913 854 aa27.34■■□□□ 1.97
SDC1-205ENST00000447124 NGEFQ8N5V2 710 aa27.34■■□□□ 1.97
SDC1-205ENST00000447124 CNBD1Q8NA66 436 aa27.34■■□□□ 1.97
SDC1-205ENST00000447124 ADAMTS8Q9UP79 889 aa27.34■■□□□ 1.97
SDC1-205ENST00000447124 KDM3BQ7LBC6 1761 aa27.33■■□□□ 1.97
SDC1-205ENST00000447124 PRELPP51888 382 aa27.33■■□□□ 1.97
SDC1-205ENST00000447124 ZNF622Q969S3 477 aaKnown RBP eCLIP27.33■■□□□ 1.97
SDC1-205ENST00000447124 ANKRD31Q8N7Z5 1873 aa27.32■■□□□ 1.96
SDC1-205ENST00000447124 RASSF7Q02833 373 aa27.32■■□□□ 1.96
SDC1-205ENST00000447124 RNF181Q9P0P0 153 aa27.32■■□□□ 1.96
SDC1-205ENST00000447124 TSPYL4Q9UJ04 414 aa27.32■■□□□ 1.96
SDC1-205ENST00000447124 PDZRN3Q9UPQ7 1066 aa27.32■■□□□ 1.96
SDC1-205ENST00000447124 RGL2O15211 777 aa27.31■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms