RNA–Protein interactions for RNA: ENST00000444268.1

COL28A1-204, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 1,755 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-204ENST00000444268 PHKG2P15735 406 aa15.87■□□□□ 0.13
COL28A1-204ENST00000444268 ZCRB1Q8TBF4 217 aaKnown RBP15.87■□□□□ 0.13
COL28A1-204ENST00000444268 PLEKHG2Q9H7P9 1386 aa15.87■□□□□ 0.13
COL28A1-204ENST00000444268 TEFQ10587 303 aa15.87■□□□□ 0.13
COL28A1-204ENST00000444268 G2E3Q7L622 706 aa15.87■□□□□ 0.13
COL28A1-204ENST00000444268 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.87■□□□□ 0.13
COL28A1-204ENST00000444268 TTC22Q5TAA0 569 aa15.86■□□□□ 0.13
COL28A1-204ENST00000444268 HDGFL1Q5TGJ6 251 aa15.86■□□□□ 0.13
COL28A1-204ENST00000444268 PLEKHM2Q8IWE5 1019 aa15.86■□□□□ 0.13
COL28A1-204ENST00000444268 HSCBQ8IWL3 235 aa15.86■□□□□ 0.13
COL28A1-204ENST00000444268 KDM6AO15550 1401 aaPredicted RBP15.86■□□□□ 0.13
COL28A1-204ENST00000444268 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.85■□□□□ 0.13
COL28A1-204ENST00000444268 RNMTO43148 476 aaKnown RBP15.85■□□□□ 0.13
COL28A1-204ENST00000444268 VPS72Q15906 364 aa15.85■□□□□ 0.13
COL28A1-204ENST00000444268 CASC1Q6TDU7 716 aa15.85■□□□□ 0.13
COL28A1-204ENST00000444268 DDX54Q8TDD1 881 aaKnown RBP15.85■□□□□ 0.13
COL28A1-204ENST00000444268 TBC1D9Q6ZT07 1266 aa15.85■□□□□ 0.13
COL28A1-204ENST00000444268 IFNL2Q8IZJ0 200 aa15.85■□□□□ 0.13
COL28A1-204ENST00000444268 SNX21Q969T3 373 aa15.85■□□□□ 0.13
COL28A1-204ENST00000444268 F6X3S4 739 aa15.84■□□□□ 0.13
COL28A1-204ENST00000444268 PCDH11XQ9BZA7 1347 aa15.84■□□□□ 0.13
COL28A1-204ENST00000444268 PCDH11YQ9BZA8 1340 aa15.84■□□□□ 0.13
COL28A1-204ENST00000444268 ADAMTS7Q9UKP4 1686 aa15.83■□□□□ 0.13
COL28A1-204ENST00000444268 EIF4A1P60842 406 aaKnown RBP15.83■□□□□ 0.12
COL28A1-204ENST00000444268 FAM98CQ17RN3 349 aaKnown RBP15.83■□□□□ 0.12
COL28A1-204ENST00000444268 ANTXR1Q9H6X2 564 aa15.83■□□□□ 0.12
COL28A1-204ENST00000444268 SCN11AQ9UI33 1791 aa15.82■□□□□ 0.12
COL28A1-204ENST00000444268 OSBPL3Q9H4L5 887 aa15.82■□□□□ 0.12
COL28A1-204ENST00000444268 THRAP3Q9Y2W1 955 aaKnown RBP15.82■□□□□ 0.12
COL28A1-204ENST00000444268 GLI3P10071 1580 aa15.82■□□□□ 0.12
COL28A1-204ENST00000444268 SIPA1L3O60292 1781 aaPredicted RBP15.81■□□□□ 0.12
COL28A1-204ENST00000444268 BTBD11A6QL63 1104 aa15.81■□□□□ 0.12
COL28A1-204ENST00000444268 GSPT1P15170 499 aaKnown RBP15.81■□□□□ 0.12
COL28A1-204ENST00000444268 BARGINQ6ZT62 677 aa15.8■□□□□ 0.12
COL28A1-204ENST00000444268 SLKQ9H2G2 1235 aaPredicted RBP15.8■□□□□ 0.12
COL28A1-204ENST00000444268 ATRNO75882 1429 aa15.8■□□□□ 0.12
COL28A1-204ENST00000444268 TNS2Q63HR2 1409 aa15.8■□□□□ 0.12
COL28A1-204ENST00000444268 EXOC5O00471 708 aa15.8■□□□□ 0.12
COL28A1-204ENST00000444268 UBTFL1P0CB47 393 aaPredicted RBP15.8■□□□□ 0.12
COL28A1-204ENST00000444268 ATP8B2P98198 1209 aa15.8■□□□□ 0.12
COL28A1-204ENST00000444268 TOGARAM1Q9Y4F4 1720 aa15.79■□□□□ 0.12
COL28A1-204ENST00000444268 KCNQ3O43525 872 aa15.79■□□□□ 0.12
COL28A1-204ENST00000444268 DCAF5Q96JK2 942 aa15.79■□□□□ 0.12
COL28A1-204ENST00000444268 SRCIN1Q9C0H9 1055 aa15.79■□□□□ 0.12
COL28A1-204ENST00000444268 CHMP5Q9NZZ3 219 aa15.79■□□□□ 0.12
COL28A1-204ENST00000444268 HDAC5Q9UQL6 1122 aa15.79■□□□□ 0.12
COL28A1-204ENST00000444268 DDB1Q16531 1140 aa15.78■□□□□ 0.12
COL28A1-204ENST00000444268 NECTIN2Q92692 538 aa15.78■□□□□ 0.12
COL28A1-204ENST00000444268 GJD4Q96KN9 370 aaPredicted RBP15.78■□□□□ 0.12
COL28A1-204ENST00000444268 LRRCC1Q9C099 1032 aa15.78■□□□□ 0.12
COL28A1-204ENST00000444268 DBF4Q9UBU7 674 aaPredicted RBP15.78■□□□□ 0.12
COL28A1-204ENST00000444268 FRAT2O75474 233 aaPredicted RBP15.77■□□□□ 0.12
COL28A1-204ENST00000444268 NFATC2IPQ8NCF5 419 aa15.77■□□□□ 0.12
COL28A1-204ENST00000444268 QTRT2Q9H974 415 aaKnown RBP15.77■□□□□ 0.12
COL28A1-204ENST00000444268 SLC52A2Q9HAB3 445 aa15.77■□□□□ 0.12
COL28A1-204ENST00000444268 IBTKQ9P2D0 1353 aaPredicted RBP15.77■□□□□ 0.12
COL28A1-204ENST00000444268 A0A0G2JS52 829 aa15.77■□□□□ 0.11
COL28A1-204ENST00000444268 GSE1Q14687 1217 aa15.77■□□□□ 0.11
COL28A1-204ENST00000444268 NKX1-1Q15270 411 aaPredicted RBP15.77■□□□□ 0.11
COL28A1-204ENST00000444268 CDCA7Q9BWT1 371 aaPredicted RBP15.77■□□□□ 0.11
COL28A1-204ENST00000444268 TRPC5Q9UL62 973 aaPredicted RBP15.77■□□□□ 0.11
COL28A1-204ENST00000444268 MRC1P22897 1456 aa15.77■□□□□ 0.11
COL28A1-204ENST00000444268 REC8O95072 547 aa15.76■□□□□ 0.11
COL28A1-204ENST00000444268 HSP90AB1P08238 724 aaKnown RBP15.76■□□□□ 0.11
COL28A1-204ENST00000444268 USP44Q9H0E7 712 aa15.76■□□□□ 0.11
COL28A1-204ENST00000444268 HEG1Q9ULI3 1381 aa15.76■□□□□ 0.11
COL28A1-204ENST00000444268 THSD7AQ9UPZ6 1657 aa15.76■□□□□ 0.11
COL28A1-204ENST00000444268 EIF2S2P20042 333 aaKnown RBP15.75■□□□□ 0.11
COL28A1-204ENST00000444268 SDSP20132 328 aa15.75■□□□□ 0.11
COL28A1-204ENST00000444268 AOX1Q06278 1338 aa15.75■□□□□ 0.11
COL28A1-204ENST00000444268 SLC39A6Q13433 755 aa15.75■□□□□ 0.11
COL28A1-204ENST00000444268 C16orf71Q8IYS4 520 aaPredicted RBP15.75■□□□□ 0.11
COL28A1-204ENST00000444268 MARCH10Q8NA82 808 aaPredicted RBP15.75■□□□□ 0.11
COL28A1-204ENST00000444268 DNAAF4Q8WXU2 420 aa15.75■□□□□ 0.11
COL28A1-204ENST00000444268 RAB11FIP3O75154 756 aa15.75■□□□□ 0.11
COL28A1-204ENST00000444268 PDE1AP54750 535 aa15.75■□□□□ 0.11
COL28A1-204ENST00000444268 CABP4P57796 275 aa15.75■□□□□ 0.11
COL28A1-204ENST00000444268 CHPF2Q9P2E5 772 aa15.75■□□□□ 0.11
COL28A1-204ENST00000444268 CIZ1Q9ULV3 898 aaPredicted RBP15.75■□□□□ 0.11
COL28A1-204ENST00000444268 LRRFIP2Q9Y608 721 aaKnown RBP15.75■□□□□ 0.11
COL28A1-204ENST00000444268 TUBGCP6Q96RT7 1819 aa15.74■□□□□ 0.11
COL28A1-204ENST00000444268 APBB1O00213 710 aa15.74■□□□□ 0.11
COL28A1-204ENST00000444268 SMARCA5O60264 1052 aaPredicted RBP15.74■□□□□ 0.11
COL28A1-204ENST00000444268 RABEP1Q15276 862 aa15.74■□□□□ 0.11
COL28A1-204ENST00000444268 SSH3Q8TE77 659 aa15.74■□□□□ 0.11
COL28A1-204ENST00000444268 PHAXQ9H814 394 aaKnown RBP15.74■□□□□ 0.11
COL28A1-204ENST00000444268 HSP90AB4PQ58FF6 505 aa15.73■□□□□ 0.11
COL28A1-204ENST00000444268 KIF2CQ99661 725 aa15.73■□□□□ 0.11
COL28A1-204ENST00000444268 HYPKQ9NX55 129 aa15.73■□□□□ 0.11
COL28A1-204ENST00000444268 EXOC6BQ9Y2D4 811 aa15.73■□□□□ 0.11
COL28A1-204ENST00000444268 GIGYF1O75420 1035 aaPredicted RBP15.72■□□□□ 0.11
COL28A1-204ENST00000444268 ALDH1L1O75891 902 aa15.72■□□□□ 0.11
COL28A1-204ENST00000444268 MX1P20591 662 aa15.72■□□□□ 0.11
COL28A1-204ENST00000444268 FAM182BQ5T319 152 aa15.72■□□□□ 0.11
COL28A1-204ENST00000444268 OTUD7AQ8TE49 926 aaPredicted RBP15.72■□□□□ 0.11
COL28A1-204ENST00000444268 DOT1LQ8TEK3 1739 aa15.72■□□□□ 0.11
COL28A1-204ENST00000444268 SALL3Q9BXA9 1300 aa15.72■□□□□ 0.11
COL28A1-204ENST00000444268 PNMA6EA0A0J9YXQ4 647 aa15.72■□□□□ 0.11
COL28A1-204ENST00000444268 BEND3Q5T5X7 828 aa15.72■□□□□ 0.11
COL28A1-204ENST00000444268 STAP2Q9UGK3 403 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms