RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 SIPA1L3O60292 1781 aaPredicted RBP10.19□□□□□ -0.78
CCDC39-201ENST00000442201 SNRPA1P09661 255 aaKnown RBP10.19□□□□□ -0.78
CCDC39-201ENST00000442201 CENPQQ7L2Z9 268 aaPredicted RBP10.19□□□□□ -0.78
CCDC39-201ENST00000442201 INTS3Q68E01 1043 aaKnown RBP10.18□□□□□ -0.78
CCDC39-201ENST00000442201 RGS12O14924 1447 aa10.18□□□□□ -0.78
CCDC39-201ENST00000442201 PRAMEF22A3QJZ6 481 aa10.18□□□□□ -0.78
CCDC39-201ENST00000442201 ZBTB40Q9NUA8 1239 aa10.18□□□□□ -0.78
CCDC39-201ENST00000442201 ZBTB7BO15156 539 aaPredicted RBP10.17□□□□□ -0.78
CCDC39-201ENST00000442201 FAM98CQ17RN3 349 aaKnown RBP10.17□□□□□ -0.78
CCDC39-201ENST00000442201 PCDHB15Q9Y5E8 787 aa10.17□□□□□ -0.78
CCDC39-201ENST00000442201 SHANK3Q9BYB0 1731 aa10.17□□□□□ -0.78
CCDC39-201ENST00000442201 KDM2BQ8NHM5 1336 aa10.17□□□□□ -0.78
CCDC39-201ENST00000442201 F6X3S4 739 aa10.17□□□□□ -0.78
CCDC39-201ENST00000442201 SLC4A10Q6U841 1118 aa10.17□□□□□ -0.78
CCDC39-201ENST00000442201 PHAXQ9H814 394 aaKnown RBP10.17□□□□□ -0.78
CCDC39-201ENST00000442201 CCT4P50991 539 aaKnown RBP10.17□□□□□ -0.78
CCDC39-201ENST00000442201 DDX21Q9NR30 783 aaKnown RBP eCLIP10.17□□□□□ -0.78
CCDC39-201ENST00000442201 HYPKQ9NX55 129 aa10.17□□□□□ -0.78
CCDC39-201ENST00000442201 VIRMAQ69YN4 1812 aaKnown RBP10.16□□□□□ -0.78
CCDC39-201ENST00000442201 ANXA1P04083 346 aa10.16□□□□□ -0.78
CCDC39-201ENST00000442201 PIGBQ92521 554 aa10.16□□□□□ -0.78
CCDC39-201ENST00000442201 PTCD1O75127 700 aaKnown RBP10.16□□□□□ -0.78
CCDC39-201ENST00000442201 RWDD1Q9H446 243 aaPredicted RBP10.16□□□□□ -0.78
CCDC39-201ENST00000442201 AFF2P51816 1311 aa10.16□□□□□ -0.78
CCDC39-201ENST00000442201 A0A0G2JS52 829 aa10.15□□□□□ -0.78
CCDC39-201ENST00000442201 FAM43AQ8N2R8 423 aa10.15□□□□□ -0.78
CCDC39-201ENST00000442201 MARCH10Q8NA82 808 aaPredicted RBP10.15□□□□□ -0.78
CCDC39-201ENST00000442201 SYTL4Q96C24 671 aaPredicted RBP10.15□□□□□ -0.78
CCDC39-201ENST00000442201 USP16Q9Y5T5 823 aa10.15□□□□□ -0.78
CCDC39-201ENST00000442201 IGHDP01880 384 aa10.15□□□□□ -0.78
CCDC39-201ENST00000442201 PROSER3Q2NL68 480 aa10.15□□□□□ -0.79
CCDC39-201ENST00000442201 PRIM1P49642 420 aaKnown RBP10.14□□□□□ -0.79
CCDC39-201ENST00000442201 ASAP1Q9ULH1 1129 aa10.14□□□□□ -0.79
CCDC39-201ENST00000442201 BCL9O00512 1426 aa10.14□□□□□ -0.79
CCDC39-201ENST00000442201 DDX58O95786 925 aaKnown RBP10.14□□□□□ -0.79
CCDC39-201ENST00000442201 PDIA6Q15084 440 aa10.14□□□□□ -0.79
CCDC39-201ENST00000442201 WNK3Q9BYP7 1800 aa10.14□□□□□ -0.79
CCDC39-201ENST00000442201 PI4KAP2A4QPH2 592 aa10.13□□□□□ -0.79
CCDC39-201ENST00000442201 PI4KAP1Q8N8J0 262 aa10.13□□□□□ -0.79
CCDC39-201ENST00000442201 DNAAF4Q8WXU2 420 aa10.13□□□□□ -0.79
CCDC39-201ENST00000442201 GJD4Q96KN9 370 aaPredicted RBP10.13□□□□□ -0.79
CCDC39-201ENST00000442201 ATG3Q9NT62 314 aa10.13□□□□□ -0.79
CCDC39-201ENST00000442201 TRPC5Q9UL62 973 aaPredicted RBP10.13□□□□□ -0.79
CCDC39-201ENST00000442201 ERBB4Q15303 1308 aa10.13□□□□□ -0.79
CCDC39-201ENST00000442201 MYL6BP14649 208 aa10.13□□□□□ -0.79
CCDC39-201ENST00000442201 HDAC1Q13547 482 aaPredicted RBP10.13□□□□□ -0.79
CCDC39-201ENST00000442201 TEX13AQ9BXU3 409 aaPredicted RBP10.13□□□□□ -0.79
CCDC39-201ENST00000442201 TOGARAM1Q9Y4F4 1720 aa10.13□□□□□ -0.79
CCDC39-201ENST00000442201 KCPQ6ZWJ8 1503 aa10.12□□□□□ -0.79
CCDC39-201ENST00000442201 PXDNLA1KZ92 1463 aa10.12□□□□□ -0.79
CCDC39-201ENST00000442201 RRP9O43818 475 aaKnown RBP10.12□□□□□ -0.79
CCDC39-201ENST00000442201 KSR2Q6VAB6 950 aa10.12□□□□□ -0.79
CCDC39-201ENST00000442201 ARXQ96QS3 562 aa10.12□□□□□ -0.79
CCDC39-201ENST00000442201 MEIS3Q99687 375 aa10.12□□□□□ -0.79
CCDC39-201ENST00000442201 BCL11BQ9C0K0 894 aaPredicted RBP10.12□□□□□ -0.79
CCDC39-201ENST00000442201 AIMP1Q12904 312 aaKnown RBP10.12□□□□□ -0.79
CCDC39-201ENST00000442201 RBM42Q9BTD8 480 aaKnown RBP10.12□□□□□ -0.79
CCDC39-201ENST00000442201 SRCIN1Q9C0H9 1055 aa10.12□□□□□ -0.79
CCDC39-201ENST00000442201 C1orf115Q9H7X2 142 aa10.12□□□□□ -0.79
CCDC39-201ENST00000442201 TAF7LQ5H9L4 462 aa10.11□□□□□ -0.79
CCDC39-201ENST00000442201 ACSBG1Q96GR2 724 aa10.11□□□□□ -0.79
CCDC39-201ENST00000442201 IPO9Q96P70 1041 aaKnown RBP10.11□□□□□ -0.79
CCDC39-201ENST00000442201 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.11□□□□□ -0.79
CCDC39-201ENST00000442201 GNAI3P08754 354 aa10.11□□□□□ -0.79
CCDC39-201ENST00000442201 XAGE3Q8WTP9 111 aa10.11□□□□□ -0.79
CCDC39-201ENST00000442201 MAP3K2Q9Y2U5 619 aa10.11□□□□□ -0.79
CCDC39-201ENST00000442201 CACNA1FO60840 1977 aa10.11□□□□□ -0.79
CCDC39-201ENST00000442201 ADCY9O60503 1353 aa10.11□□□□□ -0.79
CCDC39-201ENST00000442201 A0A0U1RQG5 324 aaPredicted RBP10.11□□□□□ -0.79
CCDC39-201ENST00000442201 COPS6Q7L5N1 327 aa10.11□□□□□ -0.79
CCDC39-201ENST00000442201 ATRNO75882 1429 aa10.11□□□□□ -0.79
CCDC39-201ENST00000442201 PAPPAQ13219 1627 aa10.1□□□□□ -0.79
CCDC39-201ENST00000442201 BRPF3Q9ULD4 1205 aa10.1□□□□□ -0.79
CCDC39-201ENST00000442201 C5P01031 1676 aa10.1□□□□□ -0.79
CCDC39-201ENST00000442201 STARD3NLO95772 234 aa10.1□□□□□ -0.79
CCDC39-201ENST00000442201 PIP4K2AP48426 406 aaPredicted RBP10.1□□□□□ -0.79
CCDC39-201ENST00000442201 BEND3Q5T5X7 828 aa10.1□□□□□ -0.79
CCDC39-201ENST00000442201 LRP10Q7Z4F1 713 aa10.1□□□□□ -0.79
CCDC39-201ENST00000442201 RIC3Q7Z5B4 369 aa10.1□□□□□ -0.79
CCDC39-201ENST00000442201 DNAJC10Q8IXB1 793 aa10.1□□□□□ -0.79
CCDC39-201ENST00000442201 QTRT2Q9H974 415 aaKnown RBP10.1□□□□□ -0.79
CCDC39-201ENST00000442201 GLI3P10071 1580 aa10.1□□□□□ -0.79
CCDC39-201ENST00000442201 A1BGP04217 495 aa10.09□□□□□ -0.79
CCDC39-201ENST00000442201 RPAP2Q8IXW5 612 aaPredicted RBP10.09□□□□□ -0.79
CCDC39-201ENST00000442201 UBR2Q8IWV8 1755 aa10.09□□□□□ -0.79
CCDC39-201ENST00000442201 ATP10DQ9P241 1426 aa10.09□□□□□ -0.79
CCDC39-201ENST00000442201 NBPF26B4DH59 902 aa10.09□□□□□ -0.79
CCDC39-201ENST00000442201 ONECUT3O60422 494 aaPredicted RBP10.09□□□□□ -0.79
CCDC39-201ENST00000442201 GNAI2P04899 355 aa10.09□□□□□ -0.79
CCDC39-201ENST00000442201 NBPF14Q5TI25 921 aa10.09□□□□□ -0.79
CCDC39-201ENST00000442201 NBPF10Q6P3W6 841 aaKnown RBP10.09□□□□□ -0.79
CCDC39-201ENST00000442201 ANKRD13DQ6ZTN6 518 aa10.09□□□□□ -0.79
CCDC39-201ENST00000442201 NBPF15Q8N660 670 aa10.09□□□□□ -0.79
CCDC39-201ENST00000442201 ALDH1L1O75891 902 aa10.09□□□□□ -0.79
CCDC39-201ENST00000442201 USP44Q9H0E7 712 aa10.09□□□□□ -0.79
CCDC39-201ENST00000442201 NEXNQ0ZGT2 675 aa10.08□□□□□ -0.8
CCDC39-201ENST00000442201 SMC5Q8IY18 1101 aa10.08□□□□□ -0.8
CCDC39-201ENST00000442201 ANKRD44Q8N8A2 993 aa10.08□□□□□ -0.8
CCDC39-201ENST00000442201 LINS1Q8NG48 757 aa10.08□□□□□ -0.8
CCDC39-201ENST00000442201 SMARCC1Q92922 1105 aaPredicted RBP10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms