RNA–Protein interactions for RNA: ENST00000438700.7

PTCHD3-201, Transcript of patched domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCHD3, Length 2,529 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3-201ENST00000438700 BTG4Q9NY30 223 aa17.19■□□□□ 0.34
PTCHD3-201ENST00000438700 GIGYF1O75420 1035 aaPredicted RBP17.19■□□□□ 0.34
PTCHD3-201ENST00000438700 IL2RBP14784 551 aa17.19■□□□□ 0.34
PTCHD3-201ENST00000438700 CCT4P50991 539 aaKnown RBP17.19■□□□□ 0.34
PTCHD3-201ENST00000438700 ZCRB1Q8TBF4 217 aaKnown RBP17.19■□□□□ 0.34
PTCHD3-201ENST00000438700 COL14A1Q05707 1796 aaKnown RBP17.19■□□□□ 0.34
PTCHD3-201ENST00000438700 HSP90AB1P08238 724 aaKnown RBP17.18■□□□□ 0.34
PTCHD3-201ENST00000438700 GSPT1P15170 499 aaKnown RBP17.18■□□□□ 0.34
PTCHD3-201ENST00000438700 PLEKHM2Q8IWE5 1019 aa17.18■□□□□ 0.34
PTCHD3-201ENST00000438700 COL16A1Q07092 1604 aaPredicted RBP17.18■□□□□ 0.34
PTCHD3-201ENST00000438700 PCDH11XQ9BZA7 1347 aa17.18■□□□□ 0.34
PTCHD3-201ENST00000438700 PCDH11YQ9BZA8 1340 aa17.18■□□□□ 0.34
PTCHD3-201ENST00000438700 PRAMEF22A3QJZ6 481 aa17.18■□□□□ 0.34
PTCHD3-201ENST00000438700 RBM25P49756 843 aaKnown RBP17.18■□□□□ 0.34
PTCHD3-201ENST00000438700 ZNF790Q6PG37 636 aa17.18■□□□□ 0.34
PTCHD3-201ENST00000438700 OTUD7AQ8TE49 926 aaPredicted RBP17.18■□□□□ 0.34
PTCHD3-201ENST00000438700 CHMP4AQ9BY43 222 aa17.18■□□□□ 0.34
PTCHD3-201ENST00000438700 N4BP2Q86UW6 1770 aaPredicted RBP17.18■□□□□ 0.34
PTCHD3-201ENST00000438700 SMARCA5O60264 1052 aaPredicted RBP17.17■□□□□ 0.34
PTCHD3-201ENST00000438700 HSCBQ8IWL3 235 aa17.17■□□□□ 0.34
PTCHD3-201ENST00000438700 RPAP2Q8IXW5 612 aaPredicted RBP17.17■□□□□ 0.34
PTCHD3-201ENST00000438700 PANK2Q9BZ23 570 aa17.17■□□□□ 0.34
PTCHD3-201ENST00000438700 SHANK3Q9BYB0 1731 aa17.17■□□□□ 0.34
PTCHD3-201ENST00000438700 ANXA1P04083 346 aa17.16■□□□□ 0.34
PTCHD3-201ENST00000438700 C5P01031 1676 aa17.16■□□□□ 0.34
PTCHD3-201ENST00000438700 XRCC6P12956 609 aaKnown RBP eCLIP17.16■□□□□ 0.34
PTCHD3-201ENST00000438700 PIP4K2BP78356 416 aa17.15■□□□□ 0.34
PTCHD3-201ENST00000438700 PXDNLA1KZ92 1463 aa17.15■□□□□ 0.34
PTCHD3-201ENST00000438700 CABP4P57796 275 aa17.15■□□□□ 0.34
PTCHD3-201ENST00000438700 DBF4Q9UBU7 674 aaPredicted RBP17.14■□□□□ 0.33
PTCHD3-201ENST00000438700 CDC45O75419 566 aa17.14■□□□□ 0.33
PTCHD3-201ENST00000438700 PROSER3Q2NL68 480 aa17.13■□□□□ 0.33
PTCHD3-201ENST00000438700 TTC22Q5TAA0 569 aa17.13■□□□□ 0.33
PTCHD3-201ENST00000438700 DDX54Q8TDD1 881 aaKnown RBP17.13■□□□□ 0.33
PTCHD3-201ENST00000438700 TOM1O60784 492 aa17.13■□□□□ 0.33
PTCHD3-201ENST00000438700 TTC5Q8N0Z6 440 aa17.13■□□□□ 0.33
PTCHD3-201ENST00000438700 ZNF496Q96IT1 587 aaPredicted RBP17.13■□□□□ 0.33
PTCHD3-201ENST00000438700 KIF2CQ99661 725 aa17.13■□□□□ 0.33
PTCHD3-201ENST00000438700 PLCH1Q4KWH8 1693 aa17.11■□□□□ 0.33
PTCHD3-201ENST00000438700 PI4KAP2A4QPH2 592 aa17.11■□□□□ 0.33
PTCHD3-201ENST00000438700 PI4KAP1Q8N8J0 262 aa17.11■□□□□ 0.33
PTCHD3-201ENST00000438700 RBM42Q9BTD8 480 aaKnown RBP17.11■□□□□ 0.33
PTCHD3-201ENST00000438700 CD2BP2O95400 341 aaKnown RBP17.1■□□□□ 0.33
PTCHD3-201ENST00000438700 ADAMTS2O95450 1211 aa17.1■□□□□ 0.33
PTCHD3-201ENST00000438700 L1TD1Q5T7N2 865 aaKnown RBP17.1■□□□□ 0.33
PTCHD3-201ENST00000438700 HMMRO75330 724 aa17.1■□□□□ 0.33
PTCHD3-201ENST00000438700 NKX1-1Q15270 411 aaPredicted RBP17.1■□□□□ 0.33
PTCHD3-201ENST00000438700 ADCY9O60503 1353 aa17.1■□□□□ 0.33
PTCHD3-201ENST00000438700 DNAAF4Q8WXU2 420 aa17.09■□□□□ 0.33
PTCHD3-201ENST00000438700 CHMP5Q9NZZ3 219 aa17.09■□□□□ 0.33
PTCHD3-201ENST00000438700 EXOC6BQ9Y2D4 811 aa17.09■□□□□ 0.33
PTCHD3-201ENST00000438700 GNAI2P04899 355 aa17.09■□□□□ 0.33
PTCHD3-201ENST00000438700 GNAI3P08754 354 aa17.09■□□□□ 0.33
PTCHD3-201ENST00000438700 MCM4P33991 863 aa17.09■□□□□ 0.33
PTCHD3-201ENST00000438700 FMNL2Q96PY5 1086 aa17.09■□□□□ 0.33
PTCHD3-201ENST00000438700 ERVV-2B6SEH9 535 aa17.08■□□□□ 0.33
PTCHD3-201ENST00000438700 GLI3P10071 1580 aa17.08■□□□□ 0.33
PTCHD3-201ENST00000438700 SNX21Q969T3 373 aa17.08■□□□□ 0.33
PTCHD3-201ENST00000438700 SRCIN1Q9C0H9 1055 aa17.08■□□□□ 0.33
PTCHD3-201ENST00000438700 DDX21Q9NR30 783 aaKnown RBP eCLIP17.08■□□□□ 0.33
PTCHD3-201ENST00000438700 HYPKQ9NX55 129 aa17.08■□□□□ 0.33
PTCHD3-201ENST00000438700 TOGARAM1Q9Y4F4 1720 aa17.08■□□□□ 0.33
PTCHD3-201ENST00000438700 GOLGA6L3A6NEY3 463 aa17.08■□□□□ 0.32
PTCHD3-201ENST00000438700 SNRPA1P09661 255 aaKnown RBP17.08■□□□□ 0.32
PTCHD3-201ENST00000438700 SDSP20132 328 aa17.08■□□□□ 0.32
PTCHD3-201ENST00000438700 PDIA6Q15084 440 aa17.08■□□□□ 0.32
PTCHD3-201ENST00000438700 DISP2A7MBM2 1401 aa17.07■□□□□ 0.32
PTCHD3-201ENST00000438700 USP44Q9H0E7 712 aa17.07■□□□□ 0.32
PTCHD3-201ENST00000438700 NUTM2BA6NNL0 878 aaPredicted RBP17.07■□□□□ 0.32
PTCHD3-201ENST00000438700 NUTM2EB1AL46 878 aaPredicted RBP17.07■□□□□ 0.32
PTCHD3-201ENST00000438700 UBAP1LF5GYI3 381 aa17.07■□□□□ 0.32
PTCHD3-201ENST00000438700 NUTM2AQ8IVF1 878 aaPredicted RBP17.07■□□□□ 0.32
PTCHD3-201ENST00000438700 FOXD4L1Q9NU39 408 aa17.07■□□□□ 0.32
PTCHD3-201ENST00000438700 BEND3Q5T5X7 828 aa17.06■□□□□ 0.32
PTCHD3-201ENST00000438700 USP16Q9Y5T5 823 aa17.06■□□□□ 0.32
PTCHD3-201ENST00000438700 UBR2Q8IWV8 1755 aa17.06■□□□□ 0.32
PTCHD3-201ENST00000438700 PAPPAQ13219 1627 aa17.06■□□□□ 0.32
PTCHD3-201ENST00000438700 LAMB4A4D0S4 1761 aa17.06■□□□□ 0.32
PTCHD3-201ENST00000438700 PNMA6EA0A0J9YXQ4 647 aa17.06■□□□□ 0.32
PTCHD3-201ENST00000438700 FSD2A1L4K1 749 aa17.06■□□□□ 0.32
PTCHD3-201ENST00000438700 TSHZ3Q63HK5 1081 aa17.06■□□□□ 0.32
PTCHD3-201ENST00000438700 MAP3K2Q9Y2U5 619 aa17.06■□□□□ 0.32
PTCHD3-201ENST00000438700 WNK3Q9BYP7 1800 aa17.06■□□□□ 0.32
PTCHD3-201ENST00000438700 NRAPQ86VF7 1730 aa17.06■□□□□ 0.32
PTCHD3-201ENST00000438700 UBTFL1P0CB47 393 aaPredicted RBP17.05■□□□□ 0.32
PTCHD3-201ENST00000438700 MYL6BP14649 208 aa17.05■□□□□ 0.32
PTCHD3-201ENST00000438700 LRRFIP2Q9Y608 721 aaKnown RBP17.05■□□□□ 0.32
PTCHD3-201ENST00000438700 HSP90AA1P07900 732 aaKnown RBP17.05■□□□□ 0.32
PTCHD3-201ENST00000438700 AIMP1Q12904 312 aaKnown RBP17.05■□□□□ 0.32
PTCHD3-201ENST00000438700 KSR2Q6VAB6 950 aa17.05■□□□□ 0.32
PTCHD3-201ENST00000438700 TRAK2O60296 914 aa17.04■□□□□ 0.32
PTCHD3-201ENST00000438700 NAP1L5Q96NT1 182 aaPredicted RBP17.04■□□□□ 0.32
PTCHD3-201ENST00000438700 KCPQ6ZWJ8 1503 aa17.03■□□□□ 0.32
PTCHD3-201ENST00000438700 PIP4K2AP48426 406 aaPredicted RBP17.03■□□□□ 0.32
PTCHD3-201ENST00000438700 DDX58O95786 925 aaKnown RBP17.02■□□□□ 0.32
PTCHD3-201ENST00000438700 PDE1AP54750 535 aa17.02■□□□□ 0.32
PTCHD3-201ENST00000438700 K7ELQ4 463 aaPredicted RBP17.02■□□□□ 0.31
PTCHD3-201ENST00000438700 NBPF7P0C2Y1 421 aaPredicted RBP17.02■□□□□ 0.31
PTCHD3-201ENST00000438700 DDIT3P35638 169 aa17.02■□□□□ 0.31
PTCHD3-201ENST00000438700 XAGE3Q8WTP9 111 aa17.02■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms