RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 THRAP3Q9Y2W1 955 aaKnown RBP7.68□□□□□ -1.18
MCF2-205ENST00000437564 RRP15Q9Y3B9 282 aaKnown RBP7.68□□□□□ -1.18
MCF2-205ENST00000437564 ARID3CA6NKF2 412 aa7.68□□□□□ -1.18
MCF2-205ENST00000437564 CBFA2T2O43439 604 aa7.68□□□□□ -1.18
MCF2-205ENST00000437564 NEBLO76041 1014 aa7.68□□□□□ -1.18
MCF2-205ENST00000437564 SNUPNO95149 360 aaKnown RBP7.68□□□□□ -1.18
MCF2-205ENST00000437564 IVLP07476 585 aa7.68□□□□□ -1.18
MCF2-205ENST00000437564 CCDC175P0C221 793 aa7.68□□□□□ -1.18
MCF2-205ENST00000437564 VCAM1P19320 739 aa7.68□□□□□ -1.18
MCF2-205ENST00000437564 MFSD10Q14728 455 aa7.68□□□□□ -1.18
MCF2-205ENST00000437564 CRYMQ14894 314 aa7.68□□□□□ -1.18
MCF2-205ENST00000437564 TBC1D10BQ4KMP7 808 aaPredicted RBP7.68□□□□□ -1.18
MCF2-205ENST00000437564 PACS2Q86VP3 889 aa7.68□□□□□ -1.18
MCF2-205ENST00000437564 FAM163AQ96GL9 167 aaPredicted RBP7.68□□□□□ -1.18
MCF2-205ENST00000437564 CCDC34Q96HJ3 373 aa7.68□□□□□ -1.18
MCF2-205ENST00000437564 RWDD1Q9H446 243 aaPredicted RBP7.68□□□□□ -1.18
MCF2-205ENST00000437564 PNMA2Q9UL42 364 aa7.68□□□□□ -1.18
MCF2-205ENST00000437564 SHTN1A0MZ66 631 aa7.67□□□□□ -1.18
MCF2-205ENST00000437564 NBPF7P0C2Y1 421 aaPredicted RBP7.67□□□□□ -1.18
MCF2-205ENST00000437564 RRP1P56182 461 aaKnown RBP7.67□□□□□ -1.18
MCF2-205ENST00000437564 ZRSR1Q15695 479 aaKnown RBP7.67□□□□□ -1.18
MCF2-205ENST00000437564 RNF214Q8ND24 703 aa7.67□□□□□ -1.18
MCF2-205ENST00000437564 BHMTQ93088 406 aa7.67□□□□□ -1.18
MCF2-205ENST00000437564 PLEKHG4BQ96PX9 1271 aa7.67□□□□□ -1.18
MCF2-205ENST00000437564 TRIM7Q9C029 511 aa7.67□□□□□ -1.18
MCF2-205ENST00000437564 TRIM6Q9C030 488 aaPredicted RBP7.67□□□□□ -1.18
MCF2-205ENST00000437564 ZC3H4Q9UPT8 1303 aaKnown RBP7.67□□□□□ -1.18
MCF2-205ENST00000437564 TRIM66O15016 1216 aa7.66□□□□□ -1.18
MCF2-205ENST00000437564 HMMRO75330 724 aa7.66□□□□□ -1.18
MCF2-205ENST00000437564 SESN3P58005 492 aa7.66□□□□□ -1.18
MCF2-205ENST00000437564 TPM4P67936 248 aa7.66□□□□□ -1.18
MCF2-205ENST00000437564 SFSWAPQ12872 951 aaKnown RBP7.66□□□□□ -1.18
MCF2-205ENST00000437564 SLFNL1Q499Z3 407 aa7.66□□□□□ -1.18
MCF2-205ENST00000437564 HHATQ5VTY9 493 aa7.66□□□□□ -1.18
MCF2-205ENST00000437564 CENPQQ7L2Z9 268 aaPredicted RBP7.66□□□□□ -1.18
MCF2-205ENST00000437564 OTUD6AQ7L8S5 288 aa7.66□□□□□ -1.18
MCF2-205ENST00000437564 MYLK4Q86YV6 388 aaPredicted RBP7.66□□□□□ -1.18
MCF2-205ENST00000437564 NBPF15Q8N660 670 aa7.66□□□□□ -1.18
MCF2-205ENST00000437564 CCDC191Q8NCU4 936 aa7.66□□□□□ -1.18
MCF2-205ENST00000437564 ZNF397Q8NF99 534 aaPredicted RBP7.66□□□□□ -1.18
MCF2-205ENST00000437564 FBXO18Q8NFZ0 1043 aa7.66□□□□□ -1.18
MCF2-205ENST00000437564 ZNF483Q8TF39 744 aaPredicted RBP7.66□□□□□ -1.18
MCF2-205ENST00000437564 RETREG1Q9H6L5 497 aa7.66□□□□□ -1.18
MCF2-205ENST00000437564 TRPV5Q9NQA5 729 aa7.66□□□□□ -1.18
MCF2-205ENST00000437564 TMOD4Q9NZQ9 345 aa7.66□□□□□ -1.18
MCF2-205ENST00000437564 TPX2Q9ULW0 747 aaKnown RBP7.66□□□□□ -1.18
MCF2-205ENST00000437564 CUX2O14529 1486 aa7.66□□□□□ -1.18
MCF2-205ENST00000437564 SH3BP5O60239 455 aa7.66□□□□□ -1.18
MCF2-205ENST00000437564 STK10O94804 968 aaKnown RBP7.66□□□□□ -1.18
MCF2-205ENST00000437564 GCFC2P16383 781 aaKnown RBP7.66□□□□□ -1.18
MCF2-205ENST00000437564 TBC1D8BQ0IIM8 1120 aa7.66□□□□□ -1.18
MCF2-205ENST00000437564 TCP11Q8WWU5 503 aa7.66□□□□□ -1.18
MCF2-205ENST00000437564 CCDC61Q9Y6R9 512 aa7.66□□□□□ -1.18
MCF2-205ENST00000437564 UNCXA6NJT0 531 aa7.65□□□□□ -1.18
MCF2-205ENST00000437564 TIMM44O43615 452 aa7.65□□□□□ -1.18
MCF2-205ENST00000437564 C7P10643 843 aa7.65□□□□□ -1.18
MCF2-205ENST00000437564 PECAM1P16284 738 aaPredicted RBP7.65□□□□□ -1.18
MCF2-205ENST00000437564 HDLBPQ00341 1268 aaKnown RBP7.65□□□□□ -1.18
MCF2-205ENST00000437564 ACBD5Q5T8D3 534 aaPredicted RBP7.65□□□□□ -1.18
MCF2-205ENST00000437564 NFATC2IPQ8NCF5 419 aa7.65□□□□□ -1.18
MCF2-205ENST00000437564 PHC3Q8NDX5 983 aa7.65□□□□□ -1.18
MCF2-205ENST00000437564 GPT2Q8TD30 523 aa7.65□□□□□ -1.18
MCF2-205ENST00000437564 TSC1Q92574 1164 aa7.65□□□□□ -1.18
MCF2-205ENST00000437564 THOC1Q96FV9 657 aaKnown RBP7.65□□□□□ -1.18
MCF2-205ENST00000437564 TRAIPQ9BWF2 469 aa7.65□□□□□ -1.18
MCF2-205ENST00000437564 UNC45AQ9H3U1 944 aa7.65□□□□□ -1.18
MCF2-205ENST00000437564 METTL14Q9HCE5 456 aaKnown RBP7.65□□□□□ -1.18
MCF2-205ENST00000437564 GNL3LQ9NVN8 582 aaKnown RBP7.65□□□□□ -1.18
MCF2-205ENST00000437564 ARHGAP31Q2M1Z3 1444 aa7.65□□□□□ -1.19
MCF2-205ENST00000437564 SOS1Q07889 1333 aaPredicted RBP7.65□□□□□ -1.19
MCF2-205ENST00000437564 CHMLP26374 656 aa7.64□□□□□ -1.19
MCF2-205ENST00000437564 NCBP1Q09161 790 aaKnown RBP7.64□□□□□ -1.19
MCF2-205ENST00000437564 CAMK2BQ13554 666 aa7.64□□□□□ -1.19
MCF2-205ENST00000437564 NEDD9Q14511 834 aa7.64□□□□□ -1.19
MCF2-205ENST00000437564 RNF20Q5VTR2 975 aa7.64□□□□□ -1.19
MCF2-205ENST00000437564 CCDC73Q6ZRK6 1079 aa7.64□□□□□ -1.19
MCF2-205ENST00000437564 CATIPQ7Z7H3 387 aa7.64□□□□□ -1.19
MCF2-205ENST00000437564 HDAC7Q8WUI4 952 aa7.64□□□□□ -1.19
MCF2-205ENST00000437564 SLC39A7Q92504 469 aa7.64□□□□□ -1.19
MCF2-205ENST00000437564 CCDC102AQ96A19 550 aa7.64□□□□□ -1.19
MCF2-205ENST00000437564 BICD1Q96G01 975 aa7.64□□□□□ -1.19
MCF2-205ENST00000437564 FAM107BQ9H098 131 aa7.64□□□□□ -1.19
MCF2-205ENST00000437564 CRISPLD2Q9H0B8 497 aa7.64□□□□□ -1.19
MCF2-205ENST00000437564 PSD3Q9NYI0 1048 aa7.64□□□□□ -1.19
MCF2-205ENST00000437564 APBB1O00213 710 aa7.64□□□□□ -1.19
MCF2-205ENST00000437564 TPPPO94811 219 aa7.64□□□□□ -1.19
MCF2-205ENST00000437564 MLLT3P42568 568 aaPredicted RBP7.64□□□□□ -1.19
MCF2-205ENST00000437564 DBN1Q16643 649 aa7.64□□□□□ -1.19
MCF2-205ENST00000437564 KLHL40Q2TBA0 621 aa7.64□□□□□ -1.19
MCF2-205ENST00000437564 MYOCDQ8IZQ8 938 aa7.64□□□□□ -1.19
MCF2-205ENST00000437564 KRI1Q8N9T8 703 aaKnown RBP7.64□□□□□ -1.19
MCF2-205ENST00000437564 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.64□□□□□ -1.19
MCF2-205ENST00000437564 EXOC6Q8TAG9 804 aa7.64□□□□□ -1.19
MCF2-205ENST00000437564 CABP2Q9NPB3 220 aa7.64□□□□□ -1.19
MCF2-205ENST00000437564 KDRP35968 1356 aa7.63□□□□□ -1.19
MCF2-205ENST00000437564 CREB3O43889 395 aa7.63□□□□□ -1.19
MCF2-205ENST00000437564 ELF1P32519 619 aa7.63□□□□□ -1.19
MCF2-205ENST00000437564 SOGA3Q5TF21 947 aa7.63□□□□□ -1.19
MCF2-205ENST00000437564 GPIHBP1Q8IV16 184 aa7.63□□□□□ -1.19
MCF2-205ENST00000437564 TRIM42Q8IWZ5 723 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms