RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 CCT2P78371 535 aaKnown RBP17.9■□□□□ 0.46
PTPRF-206ENST00000429895 SPTY2D1Q68D10 685 aaPredicted RBP17.9■□□□□ 0.46
PTPRF-206ENST00000429895 NME9Q86XW9 330 aa17.89■□□□□ 0.46
PTPRF-206ENST00000429895 PSMD1Q99460 953 aa17.89■□□□□ 0.46
PTPRF-206ENST00000429895 FEZ1Q99689 392 aa17.89■□□□□ 0.46
PTPRF-206ENST00000429895 GOLGA8AA7E2F4 631 aa17.89■□□□□ 0.45
PTPRF-206ENST00000429895 GOLGA8BA8MQT2 603 aa17.89■□□□□ 0.45
PTPRF-206ENST00000429895 IFIT3O14879 490 aaKnown RBP17.89■□□□□ 0.45
PTPRF-206ENST00000429895 CPLX3Q8WVH0 158 aa17.89■□□□□ 0.45
PTPRF-206ENST00000429895 ERICH4A6NGS2 130 aa17.89■□□□□ 0.45
PTPRF-206ENST00000429895 CCDC91Q7Z6B0 441 aa17.89■□□□□ 0.45
PTPRF-206ENST00000429895 GSTTP1A0A1W2PQM5 241 aa17.88■□□□□ 0.45
PTPRF-206ENST00000429895 CCDC196A0A1B0GTZ2 297 aa17.88■□□□□ 0.45
PTPRF-206ENST00000429895 CCDC194A0A1B0GVG4 234 aa17.88■□□□□ 0.45
PTPRF-206ENST00000429895 RPGRIP1LQ68CZ1 1315 aa17.88■□□□□ 0.45
PTPRF-206ENST00000429895 FOXO3O43524 673 aa17.88■□□□□ 0.45
PTPRF-206ENST00000429895 MAP2K1Q02750 393 aaPredicted RBP17.87■□□□□ 0.45
PTPRF-206ENST00000429895 ZNF622Q969S3 477 aaKnown RBP eCLIP17.87■□□□□ 0.45
PTPRF-206ENST00000429895 PLEKHH2Q8IVE3 1493 aa17.87■□□□□ 0.45
PTPRF-206ENST00000429895 TDRD12Q587J7 1177 aaKnown RBP17.87■□□□□ 0.45
PTPRF-206ENST00000429895 CASQ1P31415 396 aa17.87■□□□□ 0.45
PTPRF-206ENST00000429895 EHMT1Q9H9B1 1298 aa17.87■□□□□ 0.45
PTPRF-206ENST00000429895 RAB11FIP4Q86YS3 637 aa17.86■□□□□ 0.45
PTPRF-206ENST00000429895 USP8P40818 1118 aa17.86■□□□□ 0.45
PTPRF-206ENST00000429895 FERMT2Q96AC1 680 aa17.86■□□□□ 0.45
PTPRF-206ENST00000429895 NUP88Q99567 741 aaPredicted RBP17.86■□□□□ 0.45
PTPRF-206ENST00000429895 RAB34Q9BZG1 259 aa17.86■□□□□ 0.45
PTPRF-206ENST00000429895 A0A087WZG4 1122 aa17.86■□□□□ 0.45
PTPRF-206ENST00000429895 GOLGA6L10A0A0M3HER8 536 aa17.86■□□□□ 0.45
PTPRF-206ENST00000429895 PPFIA3O75145 1194 aa17.86■□□□□ 0.45
PTPRF-206ENST00000429895 CATIPQ7Z7H3 387 aa17.86■□□□□ 0.45
PTPRF-206ENST00000429895 VPS36Q86VN1 386 aa17.86■□□□□ 0.45
PTPRF-206ENST00000429895 UBXN4Q92575 508 aa17.86■□□□□ 0.45
PTPRF-206ENST00000429895 BCCIPQ9P287 314 aaKnown RBP eCLIP17.86■□□□□ 0.45
PTPRF-206ENST00000429895 CA8P35219 290 aa17.85■□□□□ 0.45
PTPRF-206ENST00000429895 LUZP1Q86V48 1076 aa17.85■□□□□ 0.45
PTPRF-206ENST00000429895 CCDC184Q52MB2 194 aa17.85■□□□□ 0.45
PTPRF-206ENST00000429895 SLF2Q8IX21 1173 aa17.85■□□□□ 0.45
PTPRF-206ENST00000429895 IL27Q8NEV9 243 aa17.85■□□□□ 0.45
PTPRF-206ENST00000429895 CRACR2AQ9BSW2 395 aa17.85■□□□□ 0.45
PTPRF-206ENST00000429895 DRC1Q96MC2 740 aa17.85■□□□□ 0.45
PTPRF-206ENST00000429895 COMMD10Q9Y6G5 202 aa17.85■□□□□ 0.45
PTPRF-206ENST00000429895 EXOC5O00471 708 aa17.85■□□□□ 0.45
PTPRF-206ENST00000429895 SFPQP23246 707 aaKnown RBP eCLIP17.85■□□□□ 0.45
PTPRF-206ENST00000429895 CTNNA2P26232 953 aa17.85■□□□□ 0.45
PTPRF-206ENST00000429895 MCM4P33991 863 aa17.85■□□□□ 0.45
PTPRF-206ENST00000429895 SNRKQ9NRH2 765 aa17.85■□□□□ 0.45
PTPRF-206ENST00000429895 SAMM50Q9Y512 469 aa17.85■□□□□ 0.45
PTPRF-206ENST00000429895 SLFN5Q08AF3 891 aa17.85■□□□□ 0.45
PTPRF-206ENST00000429895 AMOTQ4VCS5 1084 aa17.85■□□□□ 0.45
PTPRF-206ENST00000429895 DNAAF4Q8WXU2 420 aa17.84■□□□□ 0.45
PTPRF-206ENST00000429895 JARID2Q92833 1246 aaPredicted RBP17.84■□□□□ 0.45
PTPRF-206ENST00000429895 EMILIN1Q9Y6C2 1016 aa17.84■□□□□ 0.45
PTPRF-206ENST00000429895 BAG4O95429 457 aaKnown RBP17.84■□□□□ 0.45
PTPRF-206ENST00000429895 TOP1P11387 765 aaKnown RBP17.84■□□□□ 0.45
PTPRF-206ENST00000429895 TTC16Q8NEE8 873 aa17.84■□□□□ 0.45
PTPRF-206ENST00000429895 PHAXQ9H814 394 aaKnown RBP17.84■□□□□ 0.45
PTPRF-206ENST00000429895 PRKCSHP14314 528 aaPredicted RBP17.84■□□□□ 0.45
PTPRF-206ENST00000429895 HMGB2P26583 209 aaKnown RBP17.84■□□□□ 0.45
PTPRF-206ENST00000429895 GRM1Q13255 1194 aa17.84■□□□□ 0.45
PTPRF-206ENST00000429895 TCERG1LQ5VWI1 586 aa17.84■□□□□ 0.45
PTPRF-206ENST00000429895 CNNM3Q8NE01 707 aa17.84■□□□□ 0.45
PTPRF-206ENST00000429895 ANO10Q9NW15 660 aa17.84■□□□□ 0.45
PTPRF-206ENST00000429895 ATP5J2-PTCD1G3V325 749 aa17.84■□□□□ 0.45
PTPRF-206ENST00000429895 UBE4AQ14139 1066 aa17.84■□□□□ 0.45
PTPRF-206ENST00000429895 ERICH3Q5RHP9 1530 aa17.84■□□□□ 0.45
PTPRF-206ENST00000429895 KIF5CO60282 957 aa17.84■□□□□ 0.45
PTPRF-206ENST00000429895 IFFO1Q0D2I5 559 aa17.84■□□□□ 0.45
PTPRF-206ENST00000429895 PUF60Q9UHX1 559 aaKnown RBP17.83■□□□□ 0.45
PTPRF-206ENST00000429895 GOLIM4O00461 696 aa17.83■□□□□ 0.45
PTPRF-206ENST00000429895 KIF4BQ2VIQ3 1234 aa17.83■□□□□ 0.45
PTPRF-206ENST00000429895 PANK2Q9BZ23 570 aa17.83■□□□□ 0.44
PTPRF-206ENST00000429895 RNF41Q9H4P4 317 aaPredicted RBP17.83■□□□□ 0.44
PTPRF-206ENST00000429895 CKAP2LQ8IYA6 745 aa17.83■□□□□ 0.44
PTPRF-206ENST00000429895 MMRN2Q9H8L6 949 aa17.83■□□□□ 0.44
PTPRF-206ENST00000429895 MAP3K2Q9Y2U5 619 aa17.83■□□□□ 0.44
PTPRF-206ENST00000429895 HAND2P61296 217 aa17.82■□□□□ 0.44
PTPRF-206ENST00000429895 PHF8Q9UPP1 1060 aa17.82■□□□□ 0.44
PTPRF-206ENST00000429895 SSH1Q8WYL5 1049 aa17.82■□□□□ 0.44
PTPRF-206ENST00000429895 FGFR1OPO95684 399 aaKnown RBP17.82■□□□□ 0.44
PTPRF-206ENST00000429895 BIN1O00499 593 aa17.82■□□□□ 0.44
PTPRF-206ENST00000429895 URI1O94763 535 aaPredicted RBP17.82■□□□□ 0.44
PTPRF-206ENST00000429895 IDEP14735 1019 aa17.82■□□□□ 0.44
PTPRF-206ENST00000429895 MTIF2P46199 727 aaKnown RBP17.82■□□□□ 0.44
PTPRF-206ENST00000429895 HOOK3Q86VS8 718 aa17.81■□□□□ 0.44
PTPRF-206ENST00000429895 PTPN14Q15678 1187 aa17.81■□□□□ 0.44
PTPRF-206ENST00000429895 DDX46Q7L014 1031 aaKnown RBP17.81■□□□□ 0.44
PTPRF-206ENST00000429895 CIZ1Q9ULV3 898 aaPredicted RBP17.81■□□□□ 0.44
PTPRF-206ENST00000429895 TSPY2A6NKD2 308 aa17.81■□□□□ 0.44
PTPRF-206ENST00000429895 ZSCAN12O43309 604 aa17.81■□□□□ 0.44
PTPRF-206ENST00000429895 TMCO3Q6UWJ1 677 aa17.81■□□□□ 0.44
PTPRF-206ENST00000429895 SYCP3Q8IZU3 236 aa17.81■□□□□ 0.44
PTPRF-206ENST00000429895 HYPKQ9NX55 129 aa17.81■□□□□ 0.44
PTPRF-206ENST00000429895 CCDC40Q4G0X9 1142 aa17.81■□□□□ 0.44
PTPRF-206ENST00000429895 CABP5Q9NP86 173 aa17.81■□□□□ 0.44
PTPRF-206ENST00000429895 HMGB1P09429 215 aaKnown RBP17.8■□□□□ 0.44
PTPRF-206ENST00000429895 TMEM67Q5HYA8 995 aa17.8■□□□□ 0.44
PTPRF-206ENST00000429895 ISM2Q6H9L7 571 aa17.8■□□□□ 0.44
PTPRF-206ENST00000429895 SKAP1Q86WV1 359 aa17.8■□□□□ 0.44
PTPRF-206ENST00000429895 KAT14Q9H8E8 782 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms