RNA–Protein interactions for RNA: ENST00000427191.6

PTPN13-203, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 8,487 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-203ENST00000427191 TIGD1Q96MW7 591 aa16.66■□□□□ 0.26
PTPN13-203ENST00000427191 SRGAP3O43295 1099 aa16.66■□□□□ 0.26
PTPN13-203ENST00000427191 GTPBP4Q9BZE4 634 aaKnown RBP16.66■□□□□ 0.26
PTPN13-203ENST00000427191 CTCFLQ8NI51 663 aaPredicted RBP16.66■□□□□ 0.26
PTPN13-203ENST00000427191 FERMT2Q96AC1 680 aa16.66■□□□□ 0.26
PTPN13-203ENST00000427191 URI1O94763 535 aaPredicted RBP16.66■□□□□ 0.26
PTPN13-203ENST00000427191 LRP2BPQ9P2M1 347 aa16.66■□□□□ 0.26
PTPN13-203ENST00000427191 ABCC11Q96J66 1382 aa16.66■□□□□ 0.26
PTPN13-203ENST00000427191 CTAGE1Q96RT6 745 aa16.66■□□□□ 0.26
PTPN13-203ENST00000427191 C8orf76Q96K31 380 aa16.65■□□□□ 0.26
PTPN13-203ENST00000427191 GGNBP2Q9H3C7 697 aa16.65■□□□□ 0.26
PTPN13-203ENST00000427191 RAI14Q9P0K7 980 aa16.65■□□□□ 0.26
PTPN13-203ENST00000427191 SEPT6Q14141 434 aa16.65■□□□□ 0.26
PTPN13-203ENST00000427191 KDM4AO75164 1064 aa16.65■□□□□ 0.26
PTPN13-203ENST00000427191 HLTFQ14527 1009 aaKnown RBP eCLIP16.65■□□□□ 0.26
PTPN13-203ENST00000427191 BAG4O95429 457 aaKnown RBP16.64■□□□□ 0.25
PTPN13-203ENST00000427191 TUBBP07437 444 aa16.64■□□□□ 0.25
PTPN13-203ENST00000427191 SRRTQ9BXP5 876 aaKnown RBP16.64■□□□□ 0.25
PTPN13-203ENST00000427191 CTNNBL1Q8WYA6 563 aaPredicted RBP16.64■□□□□ 0.25
PTPN13-203ENST00000427191 CWC27Q6UX04 472 aaKnown RBP16.64■□□□□ 0.25
PTPN13-203ENST00000427191 RMND1Q9NWS8 449 aa16.64■□□□□ 0.25
PTPN13-203ENST00000427191 IQCA1Q86XH1 822 aa16.64■□□□□ 0.25
PTPN13-203ENST00000427191 TNNT1P13805 278 aa16.64■□□□□ 0.25
PTPN13-203ENST00000427191 RBM5P52756 815 aaKnown RBP eCLIP16.63■□□□□ 0.25
PTPN13-203ENST00000427191 PPP1R14CQ8TAE6 165 aa16.63■□□□□ 0.25
PTPN13-203ENST00000427191 FMNL3Q8IVF7 1028 aa16.63■□□□□ 0.25
PTPN13-203ENST00000427191 CALML4Q96GE6 196 aa16.63■□□□□ 0.25
PTPN13-203ENST00000427191 COMMD10Q9Y6G5 202 aa16.63■□□□□ 0.25
PTPN13-203ENST00000427191 SYNJ2O15056 1496 aa16.63■□□□□ 0.25
PTPN13-203ENST00000427191 BMP15O95972 392 aa16.63■□□□□ 0.25
PTPN13-203ENST00000427191 KIF4AO95239 1232 aa16.63■□□□□ 0.25
PTPN13-203ENST00000427191 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.63■□□□□ 0.25
PTPN13-203ENST00000427191 NCOA2Q15596 1464 aa16.63■□□□□ 0.25
PTPN13-203ENST00000427191 MPHOSPH6Q99547 160 aaKnown RBP16.63■□□□□ 0.25
PTPN13-203ENST00000427191 PPP4R3BQ5MIZ7 849 aa16.62■□□□□ 0.25
PTPN13-203ENST00000427191 FBF1Q8TES7 1133 aa16.62■□□□□ 0.25
PTPN13-203ENST00000427191 KIF5BP33176 963 aa16.62■□□□□ 0.25
PTPN13-203ENST00000427191 IQCGQ9H095 443 aaKnown RBP16.62■□□□□ 0.25
PTPN13-203ENST00000427191 CCDC141Q6ZP82 1450 aa16.62■□□□□ 0.25
PTPN13-203ENST00000427191 NKTRP30414 1462 aaKnown RBP16.62■□□□□ 0.25
PTPN13-203ENST00000427191 SNW1Q13573 536 aaKnown RBP16.62■□□□□ 0.25
PTPN13-203ENST00000427191 CABP2Q9NPB3 220 aa16.62■□□□□ 0.25
PTPN13-203ENST00000427191 BCCIPQ9P287 314 aaKnown RBP eCLIP16.62■□□□□ 0.25
PTPN13-203ENST00000427191 ERBINQ96RT1 1412 aa16.62■□□□□ 0.25
PTPN13-203ENST00000427191 NOL3O60936 208 aaKnown RBP16.62■□□□□ 0.25
PTPN13-203ENST00000427191 ZWINTO95229 277 aa16.62■□□□□ 0.25
PTPN13-203ENST00000427191 ALDH1L2Q3SY69 923 aa16.62■□□□□ 0.25
PTPN13-203ENST00000427191 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.62■□□□□ 0.25
PTPN13-203ENST00000427191 OPA1O60313 960 aa16.61■□□□□ 0.25
PTPN13-203ENST00000427191 RAB3IL1Q8TBN0 382 aa16.61■□□□□ 0.25
PTPN13-203ENST00000427191 CCDC77Q9BR77 488 aa16.61■□□□□ 0.25
PTPN13-203ENST00000427191 TCP11L1Q9NUJ3 509 aa16.61■□□□□ 0.25
PTPN13-203ENST00000427191 FCHSD2O94868 740 aa16.61■□□□□ 0.25
PTPN13-203ENST00000427191 CNNM3Q8NE01 707 aa16.61■□□□□ 0.25
PTPN13-203ENST00000427191 SELENOOQ9BVL4 669 aa16.61■□□□□ 0.25
PTPN13-203ENST00000427191 NUTM2BA6NNL0 878 aaPredicted RBP16.61■□□□□ 0.25
PTPN13-203ENST00000427191 NUTM2EB1AL46 878 aaPredicted RBP16.61■□□□□ 0.25
PTPN13-203ENST00000427191 KIAA0753Q2KHM9 967 aa16.61■□□□□ 0.25
PTPN13-203ENST00000427191 TDRD12Q587J7 1177 aaKnown RBP16.61■□□□□ 0.25
PTPN13-203ENST00000427191 CAVIN4Q5BKX8 364 aa16.61■□□□□ 0.25
PTPN13-203ENST00000427191 NUTM2AQ8IVF1 878 aaPredicted RBP16.61■□□□□ 0.25
PTPN13-203ENST00000427191 KRT222Q8N1A0 295 aa16.61■□□□□ 0.25
PTPN13-203ENST00000427191 MNAT1P51948 309 aa16.61■□□□□ 0.25
PTPN13-203ENST00000427191 RBM42Q9BTD8 480 aaKnown RBP16.61■□□□□ 0.25
PTPN13-203ENST00000427191 PIP4K2BP78356 416 aa16.61■□□□□ 0.25
PTPN13-203ENST00000427191 ATP2A1O14983 1001 aa16.6■□□□□ 0.25
PTPN13-203ENST00000427191 TBC1D5Q92609 795 aa16.6■□□□□ 0.25
PTPN13-203ENST00000427191 RPGRIP1LQ68CZ1 1315 aa16.6■□□□□ 0.25
PTPN13-203ENST00000427191 C1orf115Q9H7X2 142 aa16.6■□□□□ 0.25
PTPN13-203ENST00000427191 NBPF1Q3BBV0 1214 aa16.6■□□□□ 0.25
PTPN13-203ENST00000427191 STARD3NLO95772 234 aa16.6■□□□□ 0.25
PTPN13-203ENST00000427191 MX1P20591 662 aa16.6■□□□□ 0.25
PTPN13-203ENST00000427191 ANAPC4Q9UJX5 808 aa16.6■□□□□ 0.25
PTPN13-203ENST00000427191 TRAF1Q13077 416 aa16.6■□□□□ 0.25
PTPN13-203ENST00000427191 MAATS1Q7Z4T9 603 aa16.6■□□□□ 0.25
PTPN13-203ENST00000427191 ZSCAN29Q8IWY8 852 aaPredicted RBP16.6■□□□□ 0.25
PTPN13-203ENST00000427191 SSRP1Q08945 709 aaKnown RBP16.6■□□□□ 0.25
PTPN13-203ENST00000427191 MSL1Q68DK7 614 aa16.6■□□□□ 0.25
PTPN13-203ENST00000427191 SLC12A7Q9Y666 1083 aa16.6■□□□□ 0.25
PTPN13-203ENST00000427191 CCDC194A0A1B0GVG4 234 aa16.6■□□□□ 0.25
PTPN13-203ENST00000427191 NAPBQ9H115 298 aa16.6■□□□□ 0.25
PTPN13-203ENST00000427191 STRN4Q9NRL3 753 aa16.6■□□□□ 0.25
PTPN13-203ENST00000427191 SMC6Q96SB8 1091 aa16.59■□□□□ 0.25
PTPN13-203ENST00000427191 SIL1Q9H173 461 aa16.59■□□□□ 0.25
PTPN13-203ENST00000427191 KIAA1107Q9UPP5 1409 aa16.59■□□□□ 0.25
PTPN13-203ENST00000427191 A0A1W2PRG0 241 aa16.59■□□□□ 0.25
PTPN13-203ENST00000427191 CATIPQ7Z7H3 387 aa16.59■□□□□ 0.25
PTPN13-203ENST00000427191 WDR66Q8TBY9 1149 aa16.59■□□□□ 0.25
PTPN13-203ENST00000427191 CEP128Q6ZU80 1094 aa16.59■□□□□ 0.25
PTPN13-203ENST00000427191 KIAA1524Q8TCG1 905 aa16.59■□□□□ 0.25
PTPN13-203ENST00000427191 ARFGAP3Q9NP61 516 aa16.59■□□□□ 0.25
PTPN13-203ENST00000427191 LIMCH1Q9UPQ0 1083 aa16.59■□□□□ 0.25
PTPN13-203ENST00000427191 MAP3K12Q12852 859 aa16.59■□□□□ 0.25
PTPN13-203ENST00000427191 HMG20BQ9P0W2 317 aa16.59■□□□□ 0.25
PTPN13-203ENST00000427191 AKNAQ7Z591 1439 aa16.58■□□□□ 0.25
PTPN13-203ENST00000427191 ZNF530Q6P9A1 599 aaPredicted RBP16.58■□□□□ 0.25
PTPN13-203ENST00000427191 SCLT1Q96NL6 688 aa16.58■□□□□ 0.25
PTPN13-203ENST00000427191 BTBD11A6QL63 1104 aa16.58■□□□□ 0.25
PTPN13-203ENST00000427191 CCDC110Q8TBZ0 833 aa16.58■□□□□ 0.25
PTPN13-203ENST00000427191 ZSCAN16Q9H4T2 348 aaPredicted RBP16.58■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms