RNA–Protein interactions for RNA: ENST00000419533.1

UBR4-206, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 5,583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-206ENST00000419533 OFD1O75665 1012 aa10.03□□□□□ -0.8
UBR4-206ENST00000419533 TDO2P48775 406 aa10.03□□□□□ -0.8
UBR4-206ENST00000419533 CAVIN4Q5BKX8 364 aa10.03□□□□□ -0.8
UBR4-206ENST00000419533 BCORL1Q5H9F3 1711 aa10.03□□□□□ -0.8
UBR4-206ENST00000419533 JMYQ8N9B5 988 aa10.03□□□□□ -0.8
UBR4-206ENST00000419533 METTL24Q5JXM2 366 aa10.03□□□□□ -0.8
UBR4-206ENST00000419533 CPS1P31327 1500 aa10.03□□□□□ -0.8
UBR4-206ENST00000419533 ATP2B1P20020 1258 aa10.03□□□□□ -0.8
UBR4-206ENST00000419533 GPS2Q13227 327 aa10.03□□□□□ -0.8
UBR4-206ENST00000419533 MPRIPQ6WCQ1 1025 aa10.03□□□□□ -0.8
UBR4-206ENST00000419533 SPHKAPQ2M3C7 1700 aa10.03□□□□□ -0.8
UBR4-206ENST00000419533 ROBO2Q9HCK4 1378 aa10.02□□□□□ -0.8
UBR4-206ENST00000419533 ZNF287Q9HBT7 754 aa10.02□□□□□ -0.8
UBR4-206ENST00000419533 EDC4Q6P2E9 1401 aaKnown RBP10.02□□□□□ -0.8
UBR4-206ENST00000419533 LETM1O95202 739 aaPredicted RBP10.02□□□□□ -0.81
UBR4-206ENST00000419533 IFIT1P09914 478 aaKnown RBP10.02□□□□□ -0.81
UBR4-206ENST00000419533 MCM10Q7L590 875 aa10.02□□□□□ -0.81
UBR4-206ENST00000419533 NCOA3Q9Y6Q9 1424 aa10.02□□□□□ -0.81
UBR4-206ENST00000419533 FLT4P35916 1363 aa10.02□□□□□ -0.81
UBR4-206ENST00000419533 CDKL5O76039 1030 aa10.02□□□□□ -0.81
UBR4-206ENST00000419533 PIP4K2AP48426 406 aaPredicted RBP10.02□□□□□ -0.81
UBR4-206ENST00000419533 DDX17Q92841 729 aaKnown RBP10.02□□□□□ -0.81
UBR4-206ENST00000419533 UBAC1Q9BSL1 405 aa10.02□□□□□ -0.81
UBR4-206ENST00000419533 POLD1P28340 1107 aa10.02□□□□□ -0.81
UBR4-206ENST00000419533 NAP1L1P55209 391 aaKnown RBP10.02□□□□□ -0.81
UBR4-206ENST00000419533 HOMER1Q86YM7 354 aa10.02□□□□□ -0.81
UBR4-206ENST00000419533 FMNL2Q96PY5 1086 aa10.02□□□□□ -0.81
UBR4-206ENST00000419533 SPATA31E1Q6ZUB1 1445 aa10.02□□□□□ -0.81
UBR4-206ENST00000419533 A0A087WZG4 1122 aa10.01□□□□□ -0.81
UBR4-206ENST00000419533 USHBP1Q8N6Y0 703 aa10.01□□□□□ -0.81
UBR4-206ENST00000419533 IP6K1Q92551 441 aa10.01□□□□□ -0.81
UBR4-206ENST00000419533 STK32BQ9NY57 414 aa10.01□□□□□ -0.81
UBR4-206ENST00000419533 KINO60870 393 aaKnown RBP10.01□□□□□ -0.81
UBR4-206ENST00000419533 STK38Q15208 465 aa10.01□□□□□ -0.81
UBR4-206ENST00000419533 AEBP1Q8IUX7 1158 aa10.01□□□□□ -0.81
UBR4-206ENST00000419533 EMILIN1Q9Y6C2 1016 aa10.01□□□□□ -0.81
UBR4-206ENST00000419533 HSPA1LP34931 641 aa10.01□□□□□ -0.81
UBR4-206ENST00000419533 SPATA31D1Q6ZQQ2 1576 aa10.01□□□□□ -0.81
UBR4-206ENST00000419533 KRT32Q14532 448 aa10.01□□□□□ -0.81
UBR4-206ENST00000419533 NUP133Q8WUM0 1156 aa10.01□□□□□ -0.81
UBR4-206ENST00000419533 AIDAQ96BJ3 306 aa10.01□□□□□ -0.81
UBR4-206ENST00000419533 NOL7Q9UMY1 257 aaKnown RBP10.01□□□□□ -0.81
UBR4-206ENST00000419533 RAB11FIP3O75154 756 aa10.01□□□□□ -0.81
UBR4-206ENST00000419533 FAM98CQ17RN3 349 aaKnown RBP10.01□□□□□ -0.81
UBR4-206ENST00000419533 RPGRQ92834 1020 aaKnown RBP10.01□□□□□ -0.81
UBR4-206ENST00000419533 HYPKQ9NX55 129 aa10.01□□□□□ -0.81
UBR4-206ENST00000419533 WDHD1O75717 1129 aaPredicted RBP10□□□□□ -0.81
UBR4-206ENST00000419533 CHD1LQ86WJ1 897 aa10□□□□□ -0.81
UBR4-206ENST00000419533 MYD88Q99836 296 aa10□□□□□ -0.81
UBR4-206ENST00000419533 MAGEC2Q9UBF1 373 aaPredicted RBP10□□□□□ -0.81
UBR4-206ENST00000419533 PPRC1Q5VV67 1664 aaKnown RBP10□□□□□ -0.81
UBR4-206ENST00000419533 NKTRP30414 1462 aaKnown RBP10□□□□□ -0.81
UBR4-206ENST00000419533 PLEKHH1Q9ULM0 1364 aa10□□□□□ -0.81
UBR4-206ENST00000419533 IDH1O75874 414 aaKnown RBP10□□□□□ -0.81
UBR4-206ENST00000419533 STK11IPQ8N1F8 1099 aa10□□□□□ -0.81
UBR4-206ENST00000419533 ALDH1L2Q3SY69 923 aa10□□□□□ -0.81
UBR4-206ENST00000419533 ZNF592Q92610 1267 aa10□□□□□ -0.81
UBR4-206ENST00000419533 CCDC85AQ96PX6 553 aaPredicted RBP10□□□□□ -0.81
UBR4-206ENST00000419533 MIS18AQ9NYP9 233 aa10□□□□□ -0.81
UBR4-206ENST00000419533 ANKIB1Q9P2G1 1089 aa10□□□□□ -0.81
UBR4-206ENST00000419533 PCDH11XQ9BZA7 1347 aa10□□□□□ -0.81
UBR4-206ENST00000419533 PCDH11YQ9BZA8 1340 aa10□□□□□ -0.81
UBR4-206ENST00000419533 MAP4K4O95819 1239 aaPredicted RBP9.99□□□□□ -0.81
UBR4-206ENST00000419533 TRMT112Q9UI30 125 aaKnown RBP9.99□□□□□ -0.81
UBR4-206ENST00000419533 IFIT5Q13325 482 aaKnown RBP9.99□□□□□ -0.81
UBR4-206ENST00000419533 UNC5CLQ8IV45 518 aa9.99□□□□□ -0.81
UBR4-206ENST00000419533 KIF1BPQ96EK5 621 aa9.99□□□□□ -0.81
UBR4-206ENST00000419533 NFKBIBQ15653 356 aa9.99□□□□□ -0.81
UBR4-206ENST00000419533 FILIP1LQ4L180 1135 aa9.99□□□□□ -0.81
UBR4-206ENST00000419533 DIP2AQ14689 1571 aa9.99□□□□□ -0.81
UBR4-206ENST00000419533 MBD3O95983 291 aa9.99□□□□□ -0.81
UBR4-206ENST00000419533 SLFN5Q08AF3 891 aa9.99□□□□□ -0.81
UBR4-206ENST00000419533 IMMTQ16891 758 aaKnown RBP9.99□□□□□ -0.81
UBR4-206ENST00000419533 BLOC1S2Q6QNY1 142 aa9.99□□□□□ -0.81
UBR4-206ENST00000419533 SLF2Q8IX21 1173 aa9.99□□□□□ -0.81
UBR4-206ENST00000419533 ABCF2Q9UG63 623 aa9.99□□□□□ -0.81
UBR4-206ENST00000419533 PIK3C2BO00750 1634 aa9.99□□□□□ -0.81
UBR4-206ENST00000419533 MPHOSPH10O00566 681 aaKnown RBP9.99□□□□□ -0.81
UBR4-206ENST00000419533 WASF1Q92558 559 aa9.99□□□□□ -0.81
UBR4-206ENST00000419533 DBF4Q9UBU7 674 aaPredicted RBP9.99□□□□□ -0.81
UBR4-206ENST00000419533 SLC5A1P13866 664 aa9.98□□□□□ -0.81
UBR4-206ENST00000419533 RDXP35241 583 aaKnown RBP9.98□□□□□ -0.81
UBR4-206ENST00000419533 RBM6P78332 1123 aaKnown RBP9.98□□□□□ -0.81
UBR4-206ENST00000419533 ZSCAN31Q96LW9 406 aaPredicted RBP9.98□□□□□ -0.81
UBR4-206ENST00000419533 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.98□□□□□ -0.819e-7■■■■■ 40.7
UBR4-206ENST00000419533 PREX1Q8TCU6 1659 aa9.98□□□□□ -0.81
UBR4-206ENST00000419533 CLTCL1P53675 1640 aa9.98□□□□□ -0.81
UBR4-206ENST00000419533 USP5P45974 858 aa9.98□□□□□ -0.81
UBR4-206ENST00000419533 IL1RAPL2Q9NP60 686 aa9.98□□□□□ -0.81
UBR4-206ENST00000419533 ANKRD18BA2A2Z9 1011 aa9.98□□□□□ -0.81
UBR4-206ENST00000419533 ZFYVE27Q5T4F4 411 aa9.98□□□□□ -0.81
UBR4-206ENST00000419533 CRACR2BQ8N4Y2 399 aaPredicted RBP9.97□□□□□ -0.81
UBR4-206ENST00000419533 PTCH1Q13635 1447 aa9.97□□□□□ -0.81
UBR4-206ENST00000419533 AFF2P51816 1311 aa9.97□□□□□ -0.81
UBR4-206ENST00000419533 CCDC173Q0VFZ6 552 aa9.97□□□□□ -0.81
UBR4-206ENST00000419533 SYCP1Q15431 976 aa9.97□□□□□ -0.81
UBR4-206ENST00000419533 SPINK5Q9NQ38 1064 aaPredicted RBP9.97□□□□□ -0.81
UBR4-206ENST00000419533 POLR3DP05423 398 aaPredicted RBP9.97□□□□□ -0.81
UBR4-206ENST00000419533 STK3Q13188 491 aa9.97□□□□□ -0.81
UBR4-206ENST00000419533 STIM1Q13586 685 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms