RNA–Protein interactions for RNA: ENST00000419378.5

HMGN1-205, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 850 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-205ENST00000419378 XPCQ01831 940 aaPredicted RBP9.9□□□□□ -0.82
HMGN1-205ENST00000419378 PRR14Q9BWN1 585 aa9.9□□□□□ -0.82
HMGN1-205ENST00000419378 PRR36Q9H6K5 1346 aa9.89□□□□□ -0.83
HMGN1-205ENST00000419378 WASLO00401 505 aaPredicted RBP9.89□□□□□ -0.83
HMGN1-205ENST00000419378 MEX3CQ5U5Q3 659 aaKnown RBP9.89□□□□□ -0.83
HMGN1-205ENST00000419378 POM121Q96HA1 1249 aa9.89□□□□□ -0.83
HMGN1-205ENST00000419378 SLC27A5Q9Y2P5 690 aa9.89□□□□□ -0.83
HMGN1-205ENST00000419378 ATP7BP35670 1465 aa9.89□□□□□ -0.83
HMGN1-205ENST00000419378 QRICH2Q9H0J4 1663 aa9.89□□□□□ -0.83
HMGN1-205ENST00000419378 ROCK2O75116 1388 aaKnown RBP9.88□□□□□ -0.83
HMGN1-205ENST00000419378 ITSN1Q15811 1721 aa9.88□□□□□ -0.83
HMGN1-205ENST00000419378 A6NJR5 290 aa9.88□□□□□ -0.83
HMGN1-205ENST00000419378 USP17L8P0C7I0 530 aa9.88□□□□□ -0.83
HMGN1-205ENST00000419378 MTMR14Q8NCE2 650 aa9.88□□□□□ -0.83
HMGN1-205ENST00000419378 WBP1LQ9NX94 342 aa9.88□□□□□ -0.83
HMGN1-205ENST00000419378 GPRASP1Q5JY77 1395 aa9.88□□□□□ -0.83
HMGN1-205ENST00000419378 CENPJQ9HC77 1338 aaPredicted RBP9.87□□□□□ -0.83
HMGN1-205ENST00000419378 TOPAZ1Q8N9V7 1692 aa9.87□□□□□ -0.83
HMGN1-205ENST00000419378 CFAP99D6REC4 459 aa9.87□□□□□ -0.83
HMGN1-205ENST00000419378 NBPF8Q3BBV2 869 aa9.87□□□□□ -0.83
HMGN1-205ENST00000419378 POTEAQ6S8J7 498 aa9.87□□□□□ -0.83
HMGN1-205ENST00000419378 PMFBP1Q8TBY8 1022 aa9.87□□□□□ -0.83
HMGN1-205ENST00000419378 TSC1Q92574 1164 aa9.87□□□□□ -0.83
HMGN1-205ENST00000419378 KCTD12Q96CX2 325 aaKnown RBP9.87□□□□□ -0.83
HMGN1-205ENST00000419378 SPATA31A3Q5VYP0 1347 aa9.86□□□□□ -0.83
HMGN1-205ENST00000419378 RALGAPBQ86X10 1494 aa9.86□□□□□ -0.83
HMGN1-205ENST00000419378 SOCS7O14512 581 aa9.86□□□□□ -0.83
HMGN1-205ENST00000419378 RAD21O60216 631 aa9.86□□□□□ -0.83
HMGN1-205ENST00000419378 CTDSPL2Q05D32 466 aa9.86□□□□□ -0.83
HMGN1-205ENST00000419378 TNS3Q68CZ2 1445 aa9.86□□□□□ -0.83
HMGN1-205ENST00000419378 THSD4Q6ZMP0 1018 aa9.86□□□□□ -0.83
HMGN1-205ENST00000419378 KRT28Q7Z3Y7 464 aa9.86□□□□□ -0.83
HMGN1-205ENST00000419378 PCGF6Q9BYE7 350 aa9.86□□□□□ -0.83
HMGN1-205ENST00000419378 TRPM3Q9HCF6 1732 aaPredicted RBP9.86□□□□□ -0.83
HMGN1-205ENST00000419378 ADAMTS2O95450 1211 aa9.85□□□□□ -0.83
HMGN1-205ENST00000419378 Q3C1V9 767 aa9.85□□□□□ -0.83
HMGN1-205ENST00000419378 NUDT16Q96DE0 195 aaKnown RBP9.85□□□□□ -0.83
HMGN1-205ENST00000419378 CDK19Q9BWU1 502 aa9.85□□□□□ -0.83
HMGN1-205ENST00000419378 COG6Q9Y2V7 657 aa9.85□□□□□ -0.83
HMGN1-205ENST00000419378 PCDHB3Q9Y5E6 796 aa9.85□□□□□ -0.83
HMGN1-205ENST00000419378 SBNO1A3KN83 1393 aa9.85□□□□□ -0.83
HMGN1-205ENST00000419378 AFF2P51816 1311 aa9.84□□□□□ -0.83
HMGN1-205ENST00000419378 PSME1Q06323 249 aa9.84□□□□□ -0.83
HMGN1-205ENST00000419378 ZNF772Q68DY9 489 aaPredicted RBP9.84□□□□□ -0.83
HMGN1-205ENST00000419378 BLOC1S3Q6QNY0 202 aa9.84□□□□□ -0.83
HMGN1-205ENST00000419378 RNF19BQ6ZMZ0 732 aa9.84□□□□□ -0.83
HMGN1-205ENST00000419378 HELBQ8NG08 1087 aaPredicted RBP9.84□□□□□ -0.83
HMGN1-205ENST00000419378 PRR7Q8TB68 274 aa9.84□□□□□ -0.83
HMGN1-205ENST00000419378 C8orf37Q96NL8 207 aa9.84□□□□□ -0.83
HMGN1-205ENST00000419378 ABCA3Q99758 1704 aa9.84□□□□□ -0.83
HMGN1-205ENST00000419378 ALS2Q96Q42 1657 aa9.83□□□□□ -0.84
HMGN1-205ENST00000419378 MARF1Q9Y4F3 1742 aaKnown RBP9.83□□□□□ -0.84
HMGN1-205ENST00000419378 TRAK2O60296 914 aa9.83□□□□□ -0.84
HMGN1-205ENST00000419378 RETREG3Q86VR2 466 aa9.83□□□□□ -0.84
HMGN1-205ENST00000419378 SCUBE3Q8IX30 993 aa9.83□□□□□ -0.84
HMGN1-205ENST00000419378 ARHGEF10O15013 1369 aa9.83□□□□□ -0.84
HMGN1-205ENST00000419378 SRPK2P78362 688 aaKnown RBP9.82□□□□□ -0.84
HMGN1-205ENST00000419378 NGDNQ8NEJ9 315 aaKnown RBP9.82□□□□□ -0.84
HMGN1-205ENST00000419378 GDPD2Q9HCC8 539 aa9.82□□□□□ -0.84
HMGN1-205ENST00000419378 POLR3AO14802 1390 aaPredicted RBP9.81□□□□□ -0.84
HMGN1-205ENST00000419378 NR1I2O75469 434 aa9.81□□□□□ -0.84
HMGN1-205ENST00000419378 LRRN4Q8WUT4 740 aa9.81□□□□□ -0.84
HMGN1-205ENST00000419378 NGLY1Q96IV0 654 aa9.81□□□□□ -0.84
HMGN1-205ENST00000419378 CARD11Q9BXL7 1154 aa9.81□□□□□ -0.84
HMGN1-205ENST00000419378 HMX1Q9NP08 348 aaPredicted RBP9.81□□□□□ -0.84
HMGN1-205ENST00000419378 PPIP5K1Q6PFW1 1433 aa9.81□□□□□ -0.84
HMGN1-205ENST00000419378 CLSPNQ9HAW4 1339 aa9.81□□□□□ -0.84
HMGN1-205ENST00000419378 SBNO2Q9Y2G9 1366 aa9.8□□□□□ -0.84
HMGN1-205ENST00000419378 CRYBG1Q9Y4K1 1723 aa9.8□□□□□ -0.84
HMGN1-205ENST00000419378 BRICD5Q6PL45 260 aa9.8□□□□□ -0.84
HMGN1-205ENST00000419378 FNBP4Q8N3X1 1017 aaPredicted RBP9.8□□□□□ -0.84
HMGN1-205ENST00000419378 ACEP12821 1306 aa9.8□□□□□ -0.84
HMGN1-205ENST00000419378 EVC2Q86UK5 1308 aa9.8□□□□□ -0.84
HMGN1-205ENST00000419378 APBB1O00213 710 aa9.79□□□□□ -0.84
HMGN1-205ENST00000419378 COPS2P61201 443 aa9.79□□□□□ -0.84
HMGN1-205ENST00000419378 GJD4Q96KN9 370 aaPredicted RBP9.79□□□□□ -0.84
HMGN1-205ENST00000419378 USB1Q9BQ65 265 aaKnown RBP9.79□□□□□ -0.84
HMGN1-205ENST00000419378 C1orf115Q9H7X2 142 aa9.79□□□□□ -0.84
HMGN1-205ENST00000419378 TBC1D2BQ9UPU7 963 aa9.79□□□□□ -0.84
HMGN1-205ENST00000419378 SALL2Q9Y467 1007 aaPredicted RBP9.79□□□□□ -0.84
HMGN1-205ENST00000419378 CDK12Q9NYV4 1490 aaPredicted RBP9.79□□□□□ -0.84
HMGN1-205ENST00000419378 PER1O15534 1290 aaPredicted RBP9.78□□□□□ -0.84
HMGN1-205ENST00000419378 FMNL1O95466 1100 aaPredicted RBP9.78□□□□□ -0.84
HMGN1-205ENST00000419378 PTPN5P54829 565 aa9.78□□□□□ -0.84
HMGN1-205ENST00000419378 SPNS2Q8IVW8 549 aa9.78□□□□□ -0.84
HMGN1-205ENST00000419378 THAP11Q96EK4 314 aa9.78□□□□□ -0.84
HMGN1-205ENST00000419378 USP21Q9UK80 565 aa9.78□□□□□ -0.84
HMGN1-205ENST00000419378 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.78□□□□□ -0.84
HMGN1-205ENST00000419378 BCL9LQ86UU0 1499 aa9.78□□□□□ -0.84
HMGN1-205ENST00000419378 PLCH1Q4KWH8 1693 aa9.77□□□□□ -0.84
HMGN1-205ENST00000419378 SLIT2O94813 1529 aa9.77□□□□□ -0.84
HMGN1-205ENST00000419378 ATRNO75882 1429 aa9.77□□□□□ -0.85
HMGN1-205ENST00000419378 RXRBP28702 533 aa9.77□□□□□ -0.85
HMGN1-205ENST00000419378 ABL2P42684 1182 aa9.77□□□□□ -0.85
HMGN1-205ENST00000419378 TRIM34Q9BYJ4 488 aa9.77□□□□□ -0.85
HMGN1-205ENST00000419378 PRM3Q9NNZ6 103 aa9.77□□□□□ -0.85
HMGN1-205ENST00000419378 PHRF1Q9P1Y6 1649 aaKnown RBP9.77□□□□□ -0.85
HMGN1-205ENST00000419378 RGS12O14924 1447 aa9.76□□□□□ -0.85
HMGN1-205ENST00000419378 USP6P35125 1406 aa9.76□□□□□ -0.85
HMGN1-205ENST00000419378 RBM6P78332 1123 aaKnown RBP9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms