RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 COL15A1P39059 1388 aa15.58■□□□□ 0.08
USP4-204ENST00000416417 GNAT3A8MTJ3 354 aa15.57■□□□□ 0.08
USP4-204ENST00000416417 PRKAR2BP31323 418 aa15.57■□□□□ 0.08
USP4-204ENST00000416417 NFIXQ14938 502 aa15.57■□□□□ 0.08
USP4-204ENST00000416417 TTC5Q8N0Z6 440 aa15.57■□□□□ 0.08
USP4-204ENST00000416417 ZNF496Q96IT1 587 aaPredicted RBP15.57■□□□□ 0.08
USP4-204ENST00000416417 KIF3CO14782 793 aa15.56■□□□□ 0.08
USP4-204ENST00000416417 KCNQ3O43525 872 aa15.56■□□□□ 0.08
USP4-204ENST00000416417 TEFQ10587 303 aa15.56■□□□□ 0.08
USP4-204ENST00000416417 BICDL1Q6ZP65 573 aa15.56■□□□□ 0.08
USP4-204ENST00000416417 PIM2Q9P1W9 311 aa15.56■□□□□ 0.08
USP4-204ENST00000416417 NARFQ9UHQ1 456 aa15.56■□□□□ 0.08
USP4-204ENST00000416417 ZNF330Q9Y3S2 320 aaPredicted RBP15.56■□□□□ 0.08
USP4-204ENST00000416417 GAS2L2Q8NHY3 880 aa15.55■□□□□ 0.08
USP4-204ENST00000416417 DALRD3Q5D0E6 543 aaKnown RBP15.54■□□□□ 0.08
USP4-204ENST00000416417 C9orf131Q5VYM1 1079 aa15.54■□□□□ 0.08
USP4-204ENST00000416417 VSIG10Q8N0Z9 540 aa15.54■□□□□ 0.08
USP4-204ENST00000416417 RSPH6AQ9H0K4 717 aa15.54■□□□□ 0.08
USP4-204ENST00000416417 BRCA1P38398 1863 aaKnown RBP15.54■□□□□ 0.08
USP4-204ENST00000416417 CEP350Q5VT06 3117 aa15.54■□□□□ 0.08
USP4-204ENST00000416417 UBR2Q8IWV8 1755 aa15.54■□□□□ 0.08
USP4-204ENST00000416417 PPP2R1AP30153 589 aa15.53■□□□□ 0.08
USP4-204ENST00000416417 ZNF790Q6PG37 636 aa15.53■□□□□ 0.08
USP4-204ENST00000416417 CFAP53Q96M91 514 aa15.53■□□□□ 0.08
USP4-204ENST00000416417 A1BGP04217 495 aa15.53■□□□□ 0.08
USP4-204ENST00000416417 SERPINB2P05120 415 aa15.53■□□□□ 0.08
USP4-204ENST00000416417 PIP4K2AP48426 406 aaPredicted RBP15.53■□□□□ 0.08
USP4-204ENST00000416417 CCDC24Q8N4L8 307 aa15.53■□□□□ 0.08
USP4-204ENST00000416417 NMRK2Q9NPI5 230 aa15.53■□□□□ 0.08
USP4-204ENST00000416417 CARMIL3Q8ND23 1372 aa15.52■□□□□ 0.08
USP4-204ENST00000416417 HEG1Q9ULI3 1381 aa15.52■□□□□ 0.08
USP4-204ENST00000416417 STARD3NLO95772 234 aa15.52■□□□□ 0.07
USP4-204ENST00000416417 U2AF1L5P0DN76 240 aaPredicted RBP15.52■□□□□ 0.07
USP4-204ENST00000416417 EIF5P55010 431 aaKnown RBP15.52■□□□□ 0.07
USP4-204ENST00000416417 U2AF1Q01081 240 aaKnown RBP eCLIP15.52■□□□□ 0.07
USP4-204ENST00000416417 TBC1D2BQ9UPU7 963 aa15.52■□□□□ 0.07
USP4-204ENST00000416417 PRAMEF22A3QJZ6 481 aa15.51■□□□□ 0.07
USP4-204ENST00000416417 RASSF7Q02833 373 aa15.51■□□□□ 0.07
USP4-204ENST00000416417 DCTN1Q14203 1278 aa15.51■□□□□ 0.07
USP4-204ENST00000416417 TBC1D9BQ66K14 1250 aa15.51■□□□□ 0.07
USP4-204ENST00000416417 MCM10Q7L590 875 aa15.51■□□□□ 0.07
USP4-204ENST00000416417 AFDNP55196 1824 aaKnown RBP15.5■□□□□ 0.07
USP4-204ENST00000416417 BTBD11A6QL63 1104 aa15.5■□□□□ 0.07
USP4-204ENST00000416417 RNF181Q9P0P0 153 aa15.5■□□□□ 0.07
USP4-204ENST00000416417 SIPA1L3O60292 1781 aaPredicted RBP15.5■□□□□ 0.07
USP4-204ENST00000416417 CEMIPQ8WUJ3 1361 aa15.5■□□□□ 0.07
USP4-204ENST00000416417 HSPA6P17066 643 aa15.49■□□□□ 0.07
USP4-204ENST00000416417 FMNL2Q96PY5 1086 aa15.49■□□□□ 0.07
USP4-204ENST00000416417 NUDCQ9Y266 331 aa15.49■□□□□ 0.07
USP4-204ENST00000416417 ARFGEF1Q9Y6D6 1849 aa15.48■□□□□ 0.07
USP4-204ENST00000416417 C2CD5Q86YS7 1000 aa15.48■□□□□ 0.07
USP4-204ENST00000416417 USP16Q9Y5T5 823 aa15.48■□□□□ 0.07
USP4-204ENST00000416417 NRXN2Q9P2S2 1712 aa15.47■□□□□ 0.07
USP4-204ENST00000416417 A0A087WZG4 1122 aa15.47■□□□□ 0.07
USP4-204ENST00000416417 PRELPP51888 382 aa15.47■□□□□ 0.07
USP4-204ENST00000416417 ZNF219Q9P2Y4 722 aaPredicted RBP15.47■□□□□ 0.07
USP4-204ENST00000416417 TEX13AQ9BXU3 409 aaPredicted RBP15.46■□□□□ 0.07
USP4-204ENST00000416417 RTF1Q92541 710 aaKnown RBP15.45■□□□□ 0.06
USP4-204ENST00000416417 MIS18AQ9NYP9 233 aa15.45■□□□□ 0.06
USP4-204ENST00000416417 H0YIN7 160 aa15.44■□□□□ 0.06
USP4-204ENST00000416417 CAMTA2O94983 1202 aa15.44■□□□□ 0.06
USP4-204ENST00000416417 IL6STP40189 918 aaPredicted RBP15.44■□□□□ 0.06
USP4-204ENST00000416417 PRR5LQ6MZQ0 368 aa15.44■□□□□ 0.06
USP4-204ENST00000416417 TTLL6Q8N841 843 aa15.44■□□□□ 0.06
USP4-204ENST00000416417 ZNF622Q969S3 477 aaKnown RBP eCLIP15.44■□□□□ 0.06
USP4-204ENST00000416417 RRAGCQ9HB90 399 aa15.44■□□□□ 0.06
USP4-204ENST00000416417 SCN7AQ01118 1682 aa15.44■□□□□ 0.06
USP4-204ENST00000416417 TOMM70O94826 608 aa15.43■□□□□ 0.06
USP4-204ENST00000416417 DZIP3Q86Y13 1208 aaKnown RBP15.43■□□□□ 0.06
USP4-204ENST00000416417 HTRA3P83110 453 aa15.42■□□□□ 0.06
USP4-204ENST00000416417 NPM2Q86SE8 214 aaKnown RBP15.42■□□□□ 0.06
USP4-204ENST00000416417 ANKRD31Q8N7Z5 1873 aa15.41■□□□□ 0.06
USP4-204ENST00000416417 NFKBIEO00221 500 aa15.41■□□□□ 0.06
USP4-204ENST00000416417 NPHP1O15259 732 aa15.41■□□□□ 0.06
USP4-204ENST00000416417 C21orf2O43822 256 aa15.41■□□□□ 0.06
USP4-204ENST00000416417 SETDB2Q96T68 719 aa15.41■□□□□ 0.06
USP4-204ENST00000416417 THUMPD2Q9BTF0 503 aaKnown RBP15.41■□□□□ 0.06
USP4-204ENST00000416417 DLEC1Q9Y238 1755 aa15.4■□□□□ 0.06
USP4-204ENST00000416417 SBF1O95248 1867 aa15.4■□□□□ 0.06
USP4-204ENST00000416417 NBPF26B4DH59 902 aa15.4■□□□□ 0.06
USP4-204ENST00000416417 SNRPA1P09661 255 aaKnown RBP15.4■□□□□ 0.06
USP4-204ENST00000416417 NBPF10Q6P3W6 841 aaKnown RBP15.4■□□□□ 0.06
USP4-204ENST00000416417 C16orf71Q8IYS4 520 aaPredicted RBP15.4■□□□□ 0.06
USP4-204ENST00000416417 NBPF15Q8N660 670 aa15.4■□□□□ 0.06
USP4-204ENST00000416417 BRIP1Q9BX63 1249 aa15.4■□□□□ 0.06
USP4-204ENST00000416417 COL11A2P13942 1736 aaPredicted RBP15.4■□□□□ 0.06
USP4-204ENST00000416417 KDM2BQ8NHM5 1336 aa15.4■□□□□ 0.06
USP4-204ENST00000416417 FAM177BA6PVY3 158 aa15.39■□□□□ 0.05
USP4-204ENST00000416417 LMNB1P20700 586 aa15.39■□□□□ 0.05
USP4-204ENST00000416417 CNBD1Q8NA66 436 aa15.39■□□□□ 0.05
USP4-204ENST00000416417 PDE6BP35913 854 aa15.38■□□□□ 0.05
USP4-204ENST00000416417 TAF7Q15545 349 aaPredicted RBP15.38■□□□□ 0.05
USP4-204ENST00000416417 NGEFQ8N5V2 710 aa15.38■□□□□ 0.05
USP4-204ENST00000416417 RBM46Q8TBY0 533 aaKnown RBP15.38■□□□□ 0.05
USP4-204ENST00000416417 BCORQ6W2J9 1755 aa15.37■□□□□ 0.05
USP4-204ENST00000416417 HTATSF1O43719 755 aaKnown RBP15.37■□□□□ 0.05
USP4-204ENST00000416417 APLP1P51693 650 aa15.37■□□□□ 0.05
USP4-204ENST00000416417 PLEKHF1Q96S99 279 aa15.37■□□□□ 0.05
USP4-204ENST00000416417 ST5P78524 1137 aa15.36■□□□□ 0.05
USP4-204ENST00000416417 HLFQ16534 295 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 95.1 ms