RNA–Protein interactions for RNA: ENST00000416159.5

PDLIM2-208, Transcript of PDZ and LIM domain 2, humanhuman

TSL 5

Gene PDLIM2, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-208ENST00000416159 DPEP1P16444 411 aa23.46■■□□□ 1.35
PDLIM2-208ENST00000416159 COL15A1P39059 1388 aa23.46■■□□□ 1.35
PDLIM2-208ENST00000416159 DDR1Q08345 913 aa23.46■■□□□ 1.35
PDLIM2-208ENST00000416159 HEG1Q9ULI3 1381 aa23.46■■□□□ 1.35
PDLIM2-208ENST00000416159 SIPA1L3O60292 1781 aaPredicted RBP23.45■■□□□ 1.34
PDLIM2-208ENST00000416159 N4BP2Q86UW6 1770 aaPredicted RBP23.45■■□□□ 1.34
PDLIM2-208ENST00000416159 CANXP27824 592 aaKnown RBP23.45■■□□□ 1.34
PDLIM2-208ENST00000416159 RTF1Q92541 710 aaKnown RBP23.45■■□□□ 1.34
PDLIM2-208ENST00000416159 FMNL2Q96PY5 1086 aa23.45■■□□□ 1.34
PDLIM2-208ENST00000416159 KIAA1551Q9HCM1 1747 aa23.45■■□□□ 1.34
PDLIM2-208ENST00000416159 A0A087WZG4 1122 aa23.44■■□□□ 1.34
PDLIM2-208ENST00000416159 BTBD11A6QL63 1104 aa23.44■■□□□ 1.34
PDLIM2-208ENST00000416159 POLRMTO00411 1230 aaKnown RBP23.44■■□□□ 1.34
PDLIM2-208ENST00000416159 BCS1LQ9Y276 419 aa23.44■■□□□ 1.34
PDLIM2-208ENST00000416159 GOLGB1Q14789 3259 aaKnown RBP23.44■■□□□ 1.34
PDLIM2-208ENST00000416159 GIGYF1O75420 1035 aaPredicted RBP23.43■■□□□ 1.34
PDLIM2-208ENST00000416159 HTATSF1O43719 755 aaKnown RBP23.42■■□□□ 1.34
PDLIM2-208ENST00000416159 EIF5P55010 431 aaKnown RBP23.42■■□□□ 1.34
PDLIM2-208ENST00000416159 C1QTNF8P60827 252 aa23.42■■□□□ 1.34
PDLIM2-208ENST00000416159 ATP10DQ9P241 1426 aa23.42■■□□□ 1.34
PDLIM2-208ENST00000416159 NEFMP07197 916 aa23.4■■□□□ 1.34
PDLIM2-208ENST00000416159 KCNA3P22001 575 aa23.4■■□□□ 1.34
PDLIM2-208ENST00000416159 NFIXQ14938 502 aa23.4■■□□□ 1.34
PDLIM2-208ENST00000416159 BCL2L12Q9HB09 334 aa23.4■■□□□ 1.34
PDLIM2-208ENST00000416159 PIM2Q9P1W9 311 aa23.4■■□□□ 1.34
PDLIM2-208ENST00000416159 KCNQ3O43525 872 aa23.39■■□□□ 1.33
PDLIM2-208ENST00000416159 MCM10Q7L590 875 aa23.39■■□□□ 1.33
PDLIM2-208ENST00000416159 ADCY9O60503 1353 aa23.39■■□□□ 1.33
PDLIM2-208ENST00000416159 IL6STP40189 918 aaPredicted RBP23.38■■□□□ 1.33
PDLIM2-208ENST00000416159 SERPINB2P05120 415 aa23.37■■□□□ 1.33
PDLIM2-208ENST00000416159 ARHGAP27Q6ZUM4 889 aa23.37■■□□□ 1.33
PDLIM2-208ENST00000416159 NPM2Q86SE8 214 aaKnown RBP23.37■■□□□ 1.33
PDLIM2-208ENST00000416159 GPBP1L1Q9HC44 474 aaPredicted RBP23.37■■□□□ 1.33
PDLIM2-208ENST00000416159 BRCA1P38398 1863 aaKnown RBP23.36■■□□□ 1.33
PDLIM2-208ENST00000416159 DALRD3Q5D0E6 543 aaKnown RBP23.36■■□□□ 1.33
PDLIM2-208ENST00000416159 A1BGP04217 495 aa23.35■■□□□ 1.33
PDLIM2-208ENST00000416159 DCTN1Q14203 1278 aa23.35■■□□□ 1.33
PDLIM2-208ENST00000416159 PNNQ9H307 717 aaKnown RBP23.35■■□□□ 1.33
PDLIM2-208ENST00000416159 SNRPA1P09661 255 aaKnown RBP23.34■■□□□ 1.33
PDLIM2-208ENST00000416159 CHRNA5P30532 468 aa23.34■■□□□ 1.33
PDLIM2-208ENST00000416159 RALBP1Q15311 655 aa23.34■■□□□ 1.33
PDLIM2-208ENST00000416159 TAF7Q15545 349 aaPredicted RBP23.34■■□□□ 1.33
PDLIM2-208ENST00000416159 ZNF330Q9Y3S2 320 aaPredicted RBP23.34■■□□□ 1.33
PDLIM2-208ENST00000416159 USP16Q9Y5T5 823 aa23.34■■□□□ 1.33
PDLIM2-208ENST00000416159 AFDNP55196 1824 aaKnown RBP23.33■■□□□ 1.33
PDLIM2-208ENST00000416159 TBC1D2BQ9UPU7 963 aa23.33■■□□□ 1.33
PDLIM2-208ENST00000416159 ARFGEF1Q9Y6D6 1849 aa23.32■■□□□ 1.32
PDLIM2-208ENST00000416159 BICDL1Q6ZP65 573 aa23.32■■□□□ 1.32
PDLIM2-208ENST00000416159 PLEKHF1Q96S99 279 aa23.32■■□□□ 1.32
PDLIM2-208ENST00000416159 NRXN2Q9P2S2 1712 aa23.31■■□□□ 1.32
PDLIM2-208ENST00000416159 ZNF526Q8TF50 670 aaPredicted RBP23.31■■□□□ 1.32
PDLIM2-208ENST00000416159 TBC1D9BQ66K14 1250 aa23.3■■□□□ 1.32
PDLIM2-208ENST00000416159 SENP3-EIF4A1A0A087X0R7 540 aa23.29■■□□□ 1.32
PDLIM2-208ENST00000416159 PNISRQ8TF01 805 aaKnown RBP23.29■■□□□ 1.32
PDLIM2-208ENST00000416159 PRAMEF22A3QJZ6 481 aa23.28■■□□□ 1.32
PDLIM2-208ENST00000416159 DDX10Q13206 875 aaKnown RBP23.28■■□□□ 1.32
PDLIM2-208ENST00000416159 NFE2L2Q16236 605 aa23.28■■□□□ 1.32
PDLIM2-208ENST00000416159 DZIP3Q86Y13 1208 aaKnown RBP23.28■■□□□ 1.32
PDLIM2-208ENST00000416159 CAMTA2O94983 1202 aa23.27■■□□□ 1.32
PDLIM2-208ENST00000416159 DLG5Q8TDM6 1919 aa23.27■■□□□ 1.32
PDLIM2-208ENST00000416159 MAPK8IP3Q9UPT6 1336 aa23.27■■□□□ 1.32
PDLIM2-208ENST00000416159 PDZRN3Q9UPQ7 1066 aa23.26■■□□□ 1.31
PDLIM2-208ENST00000416159 SCN7AQ01118 1682 aa23.25■■□□□ 1.31
PDLIM2-208ENST00000416159 H0YIN7 160 aa23.25■■□□□ 1.31
PDLIM2-208ENST00000416159 C2CD5Q86YS7 1000 aa23.25■■□□□ 1.31
PDLIM2-208ENST00000416159 SETDB2Q96T68 719 aa23.25■■□□□ 1.31
PDLIM2-208ENST00000416159 MIS18AQ9NYP9 233 aa23.25■■□□□ 1.31
PDLIM2-208ENST00000416159 CARMIL3Q8ND23 1372 aa23.25■■□□□ 1.31
PDLIM2-208ENST00000416159 PIP4K2AP48426 406 aaPredicted RBP23.24■■□□□ 1.31
PDLIM2-208ENST00000416159 C9orf131Q5VYM1 1079 aa23.24■■□□□ 1.31
PDLIM2-208ENST00000416159 CLEC4GQ6UXB4 293 aa23.24■■□□□ 1.31
PDLIM2-208ENST00000416159 TTLL6Q8N841 843 aa23.24■■□□□ 1.31
PDLIM2-208ENST00000416159 BRIP1Q9BX63 1249 aa23.23■■□□□ 1.31
PDLIM2-208ENST00000416159 PDE6BP35913 854 aa23.22■■□□□ 1.31
PDLIM2-208ENST00000416159 PRR5LQ6MZQ0 368 aa23.22■■□□□ 1.31
PDLIM2-208ENST00000416159 NBPF26B4DH59 902 aa23.21■■□□□ 1.31
PDLIM2-208ENST00000416159 NBPF10Q6P3W6 841 aaKnown RBP23.21■■□□□ 1.31
PDLIM2-208ENST00000416159 NBPF15Q8N660 670 aa23.21■■□□□ 1.31
PDLIM2-208ENST00000416159 ZNF652Q9Y2D9 606 aa23.21■■□□□ 1.31
PDLIM2-208ENST00000416159 MYBBP1AQ9BQG0 1328 aaKnown RBP23.21■■□□□ 1.31
PDLIM2-208ENST00000416159 DLEC1Q9Y238 1755 aa23.2■■□□□ 1.3
PDLIM2-208ENST00000416159 KIF3CO14782 793 aa23.2■■□□□ 1.3
PDLIM2-208ENST00000416159 RGL2O15211 777 aa23.2■■□□□ 1.3
PDLIM2-208ENST00000416159 NPHP1O15259 732 aa23.2■■□□□ 1.3
PDLIM2-208ENST00000416159 EIF4A1P60842 406 aaKnown RBP23.19■■□□□ 1.3
PDLIM2-208ENST00000416159 ST5P78524 1137 aa23.19■■□□□ 1.3
PDLIM2-208ENST00000416159 CNBD1Q8NA66 436 aa23.19■■□□□ 1.3
PDLIM2-208ENST00000416159 THUMPD2Q9BTF0 503 aaKnown RBP23.19■■□□□ 1.3
PDLIM2-208ENST00000416159 RNF181Q9P0P0 153 aa23.19■■□□□ 1.3
PDLIM2-208ENST00000416159 BCORQ6W2J9 1755 aa23.19■■□□□ 1.3
PDLIM2-208ENST00000416159 ZNF622Q969S3 477 aaKnown RBP eCLIP23.18■■□□□ 1.3
PDLIM2-208ENST00000416159 KDM3BQ7LBC6 1761 aa23.17■■□□□ 1.3
PDLIM2-208ENST00000416159 RIPK4P57078 832 aa23.17■■□□□ 1.3
PDLIM2-208ENST00000416159 CCDC24Q8N4L8 307 aa23.17■■□□□ 1.3
PDLIM2-208ENST00000416159 ANKRD31Q8N7Z5 1873 aa23.17■■□□□ 1.3
PDLIM2-208ENST00000416159 SBF1O95248 1867 aa23.16■■□□□ 1.3
PDLIM2-208ENST00000416159 LMOD3Q0VAK6 560 aa23.15■■□□□ 1.3
PDLIM2-208ENST00000416159 NBPF5PQ86XG9 351 aaPredicted RBP23.15■■□□□ 1.3
PDLIM2-208ENST00000416159 LAMB4A4D0S4 1761 aa23.14■■□□□ 1.3
PDLIM2-208ENST00000416159 TMPOP42166 694 aaKnown RBP23.14■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms