RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 FMNL1O95466 1100 aaPredicted RBP3.69□□□□□ -1.82
MCF2-204ENST00000414978 SLC4A3P48751 1232 aa3.69□□□□□ -1.82
MCF2-204ENST00000414978 GTF2IP78347 998 aa3.69□□□□□ -1.82
MCF2-204ENST00000414978 RETREG3Q86VR2 466 aa3.69□□□□□ -1.82
MCF2-204ENST00000414978 CEP126Q9P2H0 1117 aa3.69□□□□□ -1.82
MCF2-204ENST00000414978 PCDHGB7Q9Y5F8 929 aa3.69□□□□□ -1.82
MCF2-204ENST00000414978 DNMT3AQ9Y6K1 912 aaPredicted RBP3.69□□□□□ -1.82
MCF2-204ENST00000414978 ATP7AQ04656 1500 aa3.69□□□□□ -1.82
MCF2-204ENST00000414978 ABCC3O15438 1527 aa3.69□□□□□ -1.82
MCF2-204ENST00000414978 FAM196BA6NMK8 535 aa3.69□□□□□ -1.82
MCF2-204ENST00000414978 HSPA2P54652 639 aa3.69□□□□□ -1.82
MCF2-204ENST00000414978 MAMSTRQ6ZN01 415 aa3.69□□□□□ -1.82
MCF2-204ENST00000414978 SLC39A7Q92504 469 aa3.69□□□□□ -1.82
MCF2-204ENST00000414978 F6X3S4 739 aa3.68□□□□□ -1.82
MCF2-204ENST00000414978 EML3Q32P44 896 aa3.68□□□□□ -1.82
MCF2-204ENST00000414978 TMEM87AQ8NBN3 555 aa3.68□□□□□ -1.82
MCF2-204ENST00000414978 WWC3Q9ULE0 1092 aa3.68□□□□□ -1.82
MCF2-204ENST00000414978 PRXQ9BXM0 1461 aa3.68□□□□□ -1.82
MCF2-204ENST00000414978 LRRIQ1Q96JM4 1722 aa3.68□□□□□ -1.82
MCF2-204ENST00000414978 SOX11P35716 441 aa3.68□□□□□ -1.82
MCF2-204ENST00000414978 HDLBPQ00341 1268 aaKnown RBP3.68□□□□□ -1.82
MCF2-204ENST00000414978 NT5DC4Q86YG4 428 aa3.68□□□□□ -1.82
MCF2-204ENST00000414978 MRS2Q9HD23 443 aa3.68□□□□□ -1.82
MCF2-204ENST00000414978 DOLKQ9UPQ8 538 aa3.68□□□□□ -1.82
MCF2-204ENST00000414978 COL16A1Q07092 1604 aaPredicted RBP3.68□□□□□ -1.82
MCF2-204ENST00000414978 AHDC1Q5TGY3 1603 aaPredicted RBP3.68□□□□□ -1.82
MCF2-204ENST00000414978 PHLPP1O60346 1717 aa3.68□□□□□ -1.82
MCF2-204ENST00000414978 DOK7Q18PE1 504 aa3.68□□□□□ -1.82
MCF2-204ENST00000414978 ATCAYQ86WG3 371 aa3.68□□□□□ -1.82
MCF2-204ENST00000414978 DZIP3Q86Y13 1208 aaKnown RBP3.68□□□□□ -1.82
MCF2-204ENST00000414978 MARVELD3Q96A59 401 aa3.68□□□□□ -1.82
MCF2-204ENST00000414978 HOXB3P14651 431 aaPredicted RBP3.67□□□□□ -1.82
MCF2-204ENST00000414978 CANXP27824 592 aaKnown RBP3.67□□□□□ -1.82
MCF2-204ENST00000414978 CAPN10Q9HC96 672 aa3.67□□□□□ -1.82
MCF2-204ENST00000414978 UBR1Q8IWV7 1749 aa3.67□□□□□ -1.82
MCF2-204ENST00000414978 ATP5J2-PTCD1G3V325 749 aa3.67□□□□□ -1.82
MCF2-204ENST00000414978 FKBP5Q13451 457 aaPredicted RBP3.67□□□□□ -1.82
MCF2-204ENST00000414978 EAPPQ56P03 285 aaPredicted RBP3.67□□□□□ -1.82
MCF2-204ENST00000414978 ROBO1Q9Y6N7 1651 aa3.67□□□□□ -1.82
MCF2-204ENST00000414978 SAMD9LQ8IVG5 1584 aa3.67□□□□□ -1.82
MCF2-204ENST00000414978 GIGYF1O75420 1035 aaPredicted RBP3.67□□□□□ -1.82
MCF2-204ENST00000414978 XPCQ01831 940 aaPredicted RBP3.67□□□□□ -1.82
MCF2-204ENST00000414978 RBL2Q08999 1139 aa3.67□□□□□ -1.82
MCF2-204ENST00000414978 ARID5BQ14865 1188 aa3.67□□□□□ -1.82
MCF2-204ENST00000414978 DMRTA1Q5VZB9 504 aa3.67□□□□□ -1.82
MCF2-204ENST00000414978 DPH6Q7L8W6 267 aa3.67□□□□□ -1.82
MCF2-204ENST00000414978 SPACA7Q96KW9 195 aa3.67□□□□□ -1.82
MCF2-204ENST00000414978 USB1Q9BQ65 265 aaKnown RBP3.67□□□□□ -1.82
MCF2-204ENST00000414978 ARHGAP9Q9BRR9 750 aa3.67□□□□□ -1.82
MCF2-204ENST00000414978 SERTAD1Q9UHV2 236 aa3.67□□□□□ -1.82
MCF2-204ENST00000414978 CHIC2Q9UKJ5 165 aa3.67□□□□□ -1.82
MCF2-204ENST00000414978 TNKS1BP1Q9C0C2 1729 aaKnown RBP3.67□□□□□ -1.82
MCF2-204ENST00000414978 NLRP1Q9C000 1473 aa3.67□□□□□ -1.82
MCF2-204ENST00000414978 EIF2AK4Q9P2K8 1649 aaKnown RBP3.66□□□□□ -1.82
MCF2-204ENST00000414978 ANKRD62A6NC57 917 aa3.66□□□□□ -1.82
MCF2-204ENST00000414978 MPSTP25325 297 aa3.66□□□□□ -1.82
MCF2-204ENST00000414978 POTEHQ6S545 545 aa3.66□□□□□ -1.82
MCF2-204ENST00000414978 SCUBE3Q8IX30 993 aa3.66□□□□□ -1.82
MCF2-204ENST00000414978 UBXN4Q92575 508 aa3.66□□□□□ -1.82
MCF2-204ENST00000414978 VTI1BQ9UEU0 232 aa3.66□□□□□ -1.82
MCF2-204ENST00000414978 NOD1Q9Y239 953 aa3.66□□□□□ -1.82
MCF2-204ENST00000414978 FAM135BQ49AJ0 1406 aa3.66□□□□□ -1.82
MCF2-204ENST00000414978 DIP2AQ14689 1571 aa3.66□□□□□ -1.82
MCF2-204ENST00000414978 TLL1O43897 1013 aa3.66□□□□□ -1.82
MCF2-204ENST00000414978 PARNO95453 639 aaKnown RBP3.66□□□□□ -1.82
MCF2-204ENST00000414978 GJA5P36382 358 aa3.66□□□□□ -1.82
MCF2-204ENST00000414978 SEC13P55735 322 aa3.66□□□□□ -1.82
MCF2-204ENST00000414978 SERBP1Q8NC51 408 aaKnown RBP eCLIP3.66□□□□□ -1.82
MCF2-204ENST00000414978 NGLY1Q96IV0 654 aa3.66□□□□□ -1.82
MCF2-204ENST00000414978 CCDC85AQ96PX6 553 aaPredicted RBP3.66□□□□□ -1.82
MCF2-204ENST00000414978 PCDHB11Q9Y5F2 797 aa3.66□□□□□ -1.82
MCF2-204ENST00000414978 MARF1Q9Y4F3 1742 aaKnown RBP3.66□□□□□ -1.82
MCF2-204ENST00000414978 P4HBP07237 508 aaKnown RBP3.66□□□□□ -1.82
MCF2-204ENST00000414978 BCAMP50895 628 aa3.66□□□□□ -1.82
MCF2-204ENST00000414978 ZC3H6P61129 1189 aaKnown RBP3.66□□□□□ -1.82
MCF2-204ENST00000414978 OCLNQ16625 522 aa3.66□□□□□ -1.82
MCF2-204ENST00000414978 NUDT12Q9BQG2 462 aa3.66□□□□□ -1.82
MCF2-204ENST00000414978 CCDC87Q9NVE4 849 aa3.66□□□□□ -1.82
MCF2-204ENST00000414978 CUEDC1Q9NWM3 386 aaPredicted RBP3.66□□□□□ -1.82
MCF2-204ENST00000414978 UGGT1Q9NYU2 1555 aa3.66□□□□□ -1.82
MCF2-204ENST00000414978 ARID4BQ4LE39 1312 aaPredicted RBP3.65□□□□□ -1.82
MCF2-204ENST00000414978 RAB11FIP3O75154 756 aa3.65□□□□□ -1.82
MCF2-204ENST00000414978 ARHGAP4P98171 946 aa3.65□□□□□ -1.82
MCF2-204ENST00000414978 VARS2Q5ST30 1063 aaKnown RBP3.65□□□□□ -1.82
MCF2-204ENST00000414978 MORN1Q5T089 497 aa3.65□□□□□ -1.82
MCF2-204ENST00000414978 ZNF592Q92610 1267 aa3.65□□□□□ -1.82
MCF2-204ENST00000414978 ZFRQ96KR1 1074 aaKnown RBP3.65□□□□□ -1.82
MCF2-204ENST00000414978 OCSTAMPQ9BR26 566 aa3.65□□□□□ -1.82
MCF2-204ENST00000414978 RAB6BQ9NRW1 208 aa3.65□□□□□ -1.82
MCF2-204ENST00000414978 FGD6Q6ZV73 1430 aa3.65□□□□□ -1.83
MCF2-204ENST00000414978 POTEIP0CG38 1075 aa3.65□□□□□ -1.83
MCF2-204ENST00000414978 ERCC3P19447 782 aa3.65□□□□□ -1.83
MCF2-204ENST00000414978 DUSP9Q99956 384 aaKnown RBP3.65□□□□□ -1.83
MCF2-204ENST00000414978 ZBED2Q9BTP6 218 aa3.65□□□□□ -1.83
MCF2-204ENST00000414978 SAP130Q9H0E3 1048 aa3.65□□□□□ -1.83
MCF2-204ENST00000414978 ACBD3Q9H3P7 528 aa3.65□□□□□ -1.83
MCF2-204ENST00000414978 TIAM1Q13009 1591 aa3.65□□□□□ -1.83
MCF2-204ENST00000414978 SLIT1O75093 1534 aa3.65□□□□□ -1.83
MCF2-204ENST00000414978 SCTRP47872 440 aa3.65□□□□□ -1.83
MCF2-204ENST00000414978 CBLBQ13191 982 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms