RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 PANK1Q8TE04 598 aa12.39□□□□□ -0.43
RIF1-202ENST00000414861 CLUAP1Q96AJ1 413 aa12.39□□□□□ -0.43
RIF1-202ENST00000414861 ZKSCAN2Q63HK3 967 aa12.39□□□□□ -0.43
RIF1-202ENST00000414861 RBM42Q9BTD8 480 aaKnown RBP12.39□□□□□ -0.43
RIF1-202ENST00000414861 STK31Q9BXU1 1019 aa12.39□□□□□ -0.43
RIF1-202ENST00000414861 PALLDQ8WX93 1383 aa12.38□□□□□ -0.43
RIF1-202ENST00000414861 CICQ96RK0 1608 aaPredicted RBP12.38□□□□□ -0.43
RIF1-202ENST00000414861 PIP4K2AP48426 406 aaPredicted RBP12.38□□□□□ -0.43
RIF1-202ENST00000414861 ATF7IPQ6VMQ6 1270 aa12.38□□□□□ -0.43
RIF1-202ENST00000414861 PDIA6Q15084 440 aa12.37□□□□□ -0.43
RIF1-202ENST00000414861 DNAJC10Q8IXB1 793 aa12.37□□□□□ -0.43
RIF1-202ENST00000414861 CRBNQ96SW2 442 aa12.37□□□□□ -0.43
RIF1-202ENST00000414861 PHAXQ9H814 394 aaKnown RBP12.37□□□□□ -0.43
RIF1-202ENST00000414861 LY75O60449 1722 aa12.36□□□□□ -0.43
RIF1-202ENST00000414861 FLIIQ13045 1269 aa12.36□□□□□ -0.43
RIF1-202ENST00000414861 PDE3AQ14432 1141 aa12.36□□□□□ -0.43
RIF1-202ENST00000414861 FAM196AQ6ZSG2 479 aa12.36□□□□□ -0.43
RIF1-202ENST00000414861 EXOC6Q8TAG9 804 aa12.36□□□□□ -0.43
RIF1-202ENST00000414861 DBF4Q9UBU7 674 aaPredicted RBP12.36□□□□□ -0.43
RIF1-202ENST00000414861 MYH14Q7Z406 1995 aaKnown RBP12.36□□□□□ -0.43
RIF1-202ENST00000414861 COL5A3P25940 1745 aaPredicted RBP12.36□□□□□ -0.43
RIF1-202ENST00000414861 VSIG10Q8N0Z9 540 aa12.36□□□□□ -0.43
RIF1-202ENST00000414861 ZNF831Q5JPB2 1677 aa12.35□□□□□ -0.43
RIF1-202ENST00000414861 LOC102724428A0A0B4J2F2 783 aa12.35□□□□□ -0.43
RIF1-202ENST00000414861 IPO8O15397 1037 aaKnown RBP12.35□□□□□ -0.43
RIF1-202ENST00000414861 SIK1P57059 783 aa12.35□□□□□ -0.43
RIF1-202ENST00000414861 LRP10Q7Z4F1 713 aa12.35□□□□□ -0.43
RIF1-202ENST00000414861 DZIP1LQ8IYY4 767 aaKnown RBP12.35□□□□□ -0.43
RIF1-202ENST00000414861 ARHGAP45Q92619 1136 aa12.35□□□□□ -0.43
RIF1-202ENST00000414861 COG6Q9Y2V7 657 aa12.35□□□□□ -0.43
RIF1-202ENST00000414861 ABCC4O15439 1325 aa12.35□□□□□ -0.43
RIF1-202ENST00000414861 PTPRCP08575 1304 aa12.35□□□□□ -0.43
RIF1-202ENST00000414861 NBPF26B4DH59 902 aa12.35□□□□□ -0.43
RIF1-202ENST00000414861 NBPF14Q5TI25 921 aa12.35□□□□□ -0.43
RIF1-202ENST00000414861 NBPF10Q6P3W6 841 aaKnown RBP12.35□□□□□ -0.43
RIF1-202ENST00000414861 FTSJ3Q8IY81 847 aaKnown RBP12.35□□□□□ -0.43
RIF1-202ENST00000414861 NBPF15Q8N660 670 aa12.35□□□□□ -0.43
RIF1-202ENST00000414861 DDX21Q9NR30 783 aaKnown RBP eCLIP12.35□□□□□ -0.43
RIF1-202ENST00000414861 N4BP2Q86UW6 1770 aaPredicted RBP12.34□□□□□ -0.43
RIF1-202ENST00000414861 F6X3S4 739 aa12.34□□□□□ -0.43
RIF1-202ENST00000414861 TRIM37O94972 964 aa12.34□□□□□ -0.43
RIF1-202ENST00000414861 A1BGP04217 495 aa12.34□□□□□ -0.43
RIF1-202ENST00000414861 MYL6BP14649 208 aa12.34□□□□□ -0.43
RIF1-202ENST00000414861 ITPK1Q13572 414 aa12.34□□□□□ -0.43
RIF1-202ENST00000414861 SMARCC1Q92922 1105 aaPredicted RBP12.34□□□□□ -0.43
RIF1-202ENST00000414861 BCL11BQ9C0K0 894 aaPredicted RBP12.34□□□□□ -0.43
RIF1-202ENST00000414861 KCNQ4P56696 695 aa12.34□□□□□ -0.43
RIF1-202ENST00000414861 FKBP5Q13451 457 aaPredicted RBP12.34□□□□□ -0.43
RIF1-202ENST00000414861 TMEM57Q8N5G2 664 aa12.34□□□□□ -0.43
RIF1-202ENST00000414861 TAF1LQ8IZX4 1826 aa12.33□□□□□ -0.44
RIF1-202ENST00000414861 ATP6V1AP38606 617 aa12.33□□□□□ -0.44
RIF1-202ENST00000414861 CHMP4AQ9BY43 222 aa12.33□□□□□ -0.44
RIF1-202ENST00000414861 RREB1Q92766 1687 aa12.33□□□□□ -0.44
RIF1-202ENST00000414861 TNS1Q9HBL0 1735 aaKnown RBP12.33□□□□□ -0.44
RIF1-202ENST00000414861 CYP19A1P11511 503 aaPredicted RBP12.33□□□□□ -0.44
RIF1-202ENST00000414861 API5Q9BZZ5 524 aaKnown RBP12.33□□□□□ -0.44
RIF1-202ENST00000414861 ADCY9O60503 1353 aa12.32□□□□□ -0.44
RIF1-202ENST00000414861 HYPKQ9NX55 129 aa12.32□□□□□ -0.44
RIF1-202ENST00000414861 ERBB4Q15303 1308 aa12.32□□□□□ -0.44
RIF1-202ENST00000414861 MVPQ14764 893 aaKnown RBP12.32□□□□□ -0.44
RIF1-202ENST00000414861 TEX13AQ9BXU3 409 aaPredicted RBP12.32□□□□□ -0.44
RIF1-202ENST00000414861 ARFGEF2Q9Y6D5 1785 aa12.31□□□□□ -0.44
RIF1-202ENST00000414861 AIMP1Q12904 312 aaKnown RBP12.31□□□□□ -0.44
RIF1-202ENST00000414861 ITPRIPQ8IWB1 547 aa12.31□□□□□ -0.44
RIF1-202ENST00000414861 XAGE3Q8WTP9 111 aa12.31□□□□□ -0.44
RIF1-202ENST00000414861 ZBTB1Q9Y2K1 713 aa12.31□□□□□ -0.44
RIF1-202ENST00000414861 NUP188Q5SRE5 1749 aa12.31□□□□□ -0.44
RIF1-202ENST00000414861 STARD3NLO95772 234 aa12.31□□□□□ -0.44
RIF1-202ENST00000414861 PI4KAP2A4QPH2 592 aa12.3□□□□□ -0.44
RIF1-202ENST00000414861 MS4A1P11836 297 aa12.3□□□□□ -0.44
RIF1-202ENST00000414861 COPS6Q7L5N1 327 aa12.3□□□□□ -0.44
RIF1-202ENST00000414861 PI4KAP1Q8N8J0 262 aa12.3□□□□□ -0.44
RIF1-202ENST00000414861 LINC00116Q8NCU8 138 aa12.3□□□□□ -0.44
RIF1-202ENST00000414861 PXDNLA1KZ92 1463 aa12.3□□□□□ -0.44
RIF1-202ENST00000414861 CRKLP46109 303 aaKnown RBP12.3□□□□□ -0.44
RIF1-202ENST00000414861 SLC4A10Q6U841 1118 aa12.3□□□□□ -0.44
RIF1-202ENST00000414861 INTS5Q6P9B9 1019 aaKnown RBP12.29□□□□□ -0.44
RIF1-202ENST00000414861 TTLL7Q6ZT98 887 aa12.29□□□□□ -0.44
RIF1-202ENST00000414861 CCNL1Q9UK58 526 aaPredicted RBP12.29□□□□□ -0.44
RIF1-202ENST00000414861 ZNF330Q9Y3S2 320 aaPredicted RBP12.29□□□□□ -0.44
RIF1-202ENST00000414861 ERICH6BQ5W0A0 696 aa12.28□□□□□ -0.44
RIF1-202ENST00000414861 INTS3Q68E01 1043 aaKnown RBP12.28□□□□□ -0.44
RIF1-202ENST00000414861 CCDC87Q9NVE4 849 aa12.28□□□□□ -0.44
RIF1-202ENST00000414861 MAP3K2Q9Y2U5 619 aa12.28□□□□□ -0.44
RIF1-202ENST00000414861 C4BP0C0L5 1744 aa12.28□□□□□ -0.44
RIF1-202ENST00000414861 DNAAF4Q8WXU2 420 aa12.28□□□□□ -0.44
RIF1-202ENST00000414861 LRRC4BQ9NT99 713 aa12.28□□□□□ -0.44
RIF1-202ENST00000414861 KSR2Q6VAB6 950 aa12.27□□□□□ -0.45
RIF1-202ENST00000414861 DDX19BQ9UMR2 479 aa12.27□□□□□ -0.45
RIF1-202ENST00000414861 AFDNP55196 1824 aaKnown RBP12.27□□□□□ -0.45
RIF1-202ENST00000414861 DDX58O95786 925 aaKnown RBP12.26□□□□□ -0.45
RIF1-202ENST00000414861 ATP10DQ9P241 1426 aa12.26□□□□□ -0.45
RIF1-202ENST00000414861 ANKRD13DQ6ZTN6 518 aa12.26□□□□□ -0.45
RIF1-202ENST00000414861 PPP4R2Q9NY27 417 aa12.26□□□□□ -0.45
RIF1-202ENST00000414861 CNTNAP4Q9C0A0 1308 aa12.25□□□□□ -0.45
RIF1-202ENST00000414861 RGPD3A6NKT7 1758 aaPredicted RBP12.25□□□□□ -0.45
RIF1-202ENST00000414861 RGPD4Q7Z3J3 1758 aa12.25□□□□□ -0.45
RIF1-202ENST00000414861 ZBTB7BO15156 539 aaPredicted RBP12.25□□□□□ -0.45
RIF1-202ENST00000414861 APBA3O96018 575 aa12.25□□□□□ -0.45
RIF1-202ENST00000414861 IL6STP40189 918 aaPredicted RBP12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 297.2 ms