RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 RTCBQ9Y3I0 505 aaKnown RBP10.36□□□□□ -0.75
SYNE1-211ENST00000413186 CNTROBQ8N137 903 aa10.36□□□□□ -0.75
SYNE1-211ENST00000413186 HIP1O00291 1037 aa10.35□□□□□ -0.75
SYNE1-211ENST00000413186 LINS1Q8NG48 757 aa10.35□□□□□ -0.75
SYNE1-211ENST00000413186 CHMP4CQ96CF2 233 aa10.35□□□□□ -0.75
SYNE1-211ENST00000413186 PDZRN3Q9UPQ7 1066 aa10.35□□□□□ -0.75
SYNE1-211ENST00000413186 TBC1D2BQ9UPU7 963 aa10.35□□□□□ -0.75
SYNE1-211ENST00000413186 SIGLEC1Q9BZZ2 1709 aa10.35□□□□□ -0.75
SYNE1-211ENST00000413186 DCAF8L1A6NGE4 600 aa10.35□□□□□ -0.75
SYNE1-211ENST00000413186 IFIT5Q13325 482 aaKnown RBP10.35□□□□□ -0.75
SYNE1-211ENST00000413186 ANXA1P04083 346 aa10.35□□□□□ -0.75
SYNE1-211ENST00000413186 IL17REQ8NFR9 667 aa10.35□□□□□ -0.75
SYNE1-211ENST00000413186 KIF1BPQ96EK5 621 aa10.35□□□□□ -0.75
SYNE1-211ENST00000413186 NBPF14Q5TI25 921 aa10.34□□□□□ -0.75
SYNE1-211ENST00000413186 TSPYL6Q8N831 410 aa10.34□□□□□ -0.75
SYNE1-211ENST00000413186 AKAP2Q9Y2D5 859 aa10.34□□□□□ -0.75
SYNE1-211ENST00000413186 CCNL1Q9UK58 526 aaPredicted RBP10.34□□□□□ -0.75
SYNE1-211ENST00000413186 ZKSCAN1P17029 563 aaPredicted RBP10.34□□□□□ -0.75
SYNE1-211ENST00000413186 GPTP24298 496 aa10.34□□□□□ -0.75
SYNE1-211ENST00000413186 SIL1Q9H173 461 aa10.34□□□□□ -0.75
SYNE1-211ENST00000413186 ERBB4Q15303 1308 aa10.34□□□□□ -0.75
SYNE1-211ENST00000413186 PNPLA6Q8IY17 1366 aa10.34□□□□□ -0.75
SYNE1-211ENST00000413186 OVOS2A0A0J9YW53 1432 aa10.34□□□□□ -0.75
SYNE1-211ENST00000413186 MST1RQ04912 1400 aa10.34□□□□□ -0.75
SYNE1-211ENST00000413186 OVOS2Q6IE36 1432 aa10.34□□□□□ -0.75
SYNE1-211ENST00000413186 RNF20Q5VTR2 975 aa10.34□□□□□ -0.75
SYNE1-211ENST00000413186 DZIP3Q86Y13 1208 aaKnown RBP10.34□□□□□ -0.75
SYNE1-211ENST00000413186 ARHGEF28Q8N1W1 1705 aaKnown RBP10.33□□□□□ -0.76
SYNE1-211ENST00000413186 ANKRD18BA2A2Z9 1011 aa10.33□□□□□ -0.76
SYNE1-211ENST00000413186 CDC45O75419 566 aa10.33□□□□□ -0.76
SYNE1-211ENST00000413186 EIF4A1P60842 406 aaKnown RBP10.33□□□□□ -0.76
SYNE1-211ENST00000413186 USP19O94966 1318 aa10.33□□□□□ -0.76
SYNE1-211ENST00000413186 ST18O60284 1047 aa10.33□□□□□ -0.76
SYNE1-211ENST00000413186 LRRFIP2Q9Y608 721 aaKnown RBP10.33□□□□□ -0.76
SYNE1-211ENST00000413186 UBE3BQ7Z3V4 1068 aa10.33□□□□□ -0.76
SYNE1-211ENST00000413186 CHD1LQ86WJ1 897 aa10.33□□□□□ -0.76
SYNE1-211ENST00000413186 SETDB2Q96T68 719 aa10.33□□□□□ -0.76
SYNE1-211ENST00000413186 CDC5LQ99459 802 aaKnown RBP10.33□□□□□ -0.76
SYNE1-211ENST00000413186 ATP5J2-PTCD1G3V325 749 aa10.33□□□□□ -0.76
SYNE1-211ENST00000413186 RXRBP28702 533 aa10.33□□□□□ -0.76
SYNE1-211ENST00000413186 TTC39AQ5SRH9 613 aa10.33□□□□□ -0.76
SYNE1-211ENST00000413186 FAM196AQ6ZSG2 479 aa10.33□□□□□ -0.76
SYNE1-211ENST00000413186 ZNF496Q96IT1 587 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-211ENST00000413186 FSD1Q9BTV5 496 aa10.32□□□□□ -0.76
SYNE1-211ENST00000413186 NYXQ9GZU5 481 aa10.32□□□□□ -0.76
SYNE1-211ENST00000413186 TOMM22Q9NS69 142 aa10.32□□□□□ -0.76
SYNE1-211ENST00000413186 NBPF5PQ86XG9 351 aaPredicted RBP10.32□□□□□ -0.76
SYNE1-211ENST00000413186 FBXW7Q969H0 707 aa10.32□□□□□ -0.76
SYNE1-211ENST00000413186 NCAPD2Q15021 1401 aa10.32□□□□□ -0.76
SYNE1-211ENST00000413186 ADAMTSL3P82987 1691 aa10.32□□□□□ -0.76
SYNE1-211ENST00000413186 KRT24Q2M2I5 525 aa10.32□□□□□ -0.76
SYNE1-211ENST00000413186 C20orf194Q5TEA3 1177 aa10.32□□□□□ -0.76
SYNE1-211ENST00000413186 PPP1R1BQ9UD71 204 aaPredicted RBP10.32□□□□□ -0.76
SYNE1-211ENST00000413186 ISY1Q9ULR0 285 aaKnown RBP10.32□□□□□ -0.76
SYNE1-211ENST00000413186 GRM8O00222 908 aa10.32□□□□□ -0.76
SYNE1-211ENST00000413186 PHF14O94880 888 aa10.32□□□□□ -0.76
SYNE1-211ENST00000413186 METTL24Q5JXM2 366 aa10.32□□□□□ -0.76
SYNE1-211ENST00000413186 RPGRQ92834 1020 aaKnown RBP10.32□□□□□ -0.76
SYNE1-211ENST00000413186 MYO5BQ9ULV0 1848 aa10.31□□□□□ -0.76
SYNE1-211ENST00000413186 ST5P78524 1137 aa10.31□□□□□ -0.76
SYNE1-211ENST00000413186 AACSQ86V21 672 aa10.31□□□□□ -0.76
SYNE1-211ENST00000413186 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.31□□□□□ -0.76
SYNE1-211ENST00000413186 TFCP2L1Q9NZI6 479 aa10.31□□□□□ -0.76
SYNE1-211ENST00000413186 TULP1O00294 542 aaPredicted RBP10.31□□□□□ -0.76
SYNE1-211ENST00000413186 IFIT1P09914 478 aaKnown RBP10.31□□□□□ -0.76
SYNE1-211ENST00000413186 SPINK5Q9NQ38 1064 aaPredicted RBP10.31□□□□□ -0.76
SYNE1-211ENST00000413186 CCDC87Q9NVE4 849 aa10.31□□□□□ -0.76
SYNE1-211ENST00000413186 AXIN2Q9Y2T1 843 aa10.31□□□□□ -0.76
SYNE1-211ENST00000413186 USP32Q8NFA0 1604 aa10.31□□□□□ -0.76
SYNE1-211ENST00000413186 AFF2P51816 1311 aa10.31□□□□□ -0.76
SYNE1-211ENST00000413186 WASHC4Q2M389 1173 aa10.31□□□□□ -0.76
SYNE1-211ENST00000413186 TRAPPC3LQ5T215 181 aa10.31□□□□□ -0.76
SYNE1-211ENST00000413186 ZSCAN25Q6NSZ9 544 aa10.31□□□□□ -0.76
SYNE1-211ENST00000413186 PLBD2Q8NHP8 589 aa10.31□□□□□ -0.76
SYNE1-211ENST00000413186 ANO2Q9NQ90 1003 aa10.3□□□□□ -0.76
SYNE1-211ENST00000413186 BAG6P46379 1132 aa10.3□□□□□ -0.76
SYNE1-211ENST00000413186 PARP10Q53GL7 1025 aa10.3□□□□□ -0.76
SYNE1-211ENST00000413186 TPTE2Q6XPS3 522 aa10.3□□□□□ -0.76
SYNE1-211ENST00000413186 NIP7Q9Y221 180 aaKnown RBP eCLIP10.3□□□□□ -0.76
SYNE1-211ENST00000413186 EXOC6BQ9Y2D4 811 aa10.3□□□□□ -0.76
SYNE1-211ENST00000413186 KIF3AQ9Y496 699 aa10.3□□□□□ -0.76
SYNE1-211ENST00000413186 CRB1P82279 1406 aa10.3□□□□□ -0.76
SYNE1-211ENST00000413186 GIGYF1O75420 1035 aaPredicted RBP10.3□□□□□ -0.76
SYNE1-211ENST00000413186 CCDC152Q4G0S7 254 aa10.3□□□□□ -0.76
SYNE1-211ENST00000413186 DDX46Q7L014 1031 aaKnown RBP10.3□□□□□ -0.76
SYNE1-211ENST00000413186 DNAJC10Q8IXB1 793 aa10.3□□□□□ -0.76
SYNE1-211ENST00000413186 STK32BQ9NY57 414 aa10.3□□□□□ -0.76
SYNE1-211ENST00000413186 ITSN1Q15811 1721 aa10.3□□□□□ -0.76
SYNE1-211ENST00000413186 GNPATO15228 680 aa10.3□□□□□ -0.76
SYNE1-211ENST00000413186 PTMAP06454 111 aaKnown RBP10.3□□□□□ -0.76
SYNE1-211ENST00000413186 TRDNQ13061 729 aa10.3□□□□□ -0.76
SYNE1-211ENST00000413186 CCDC85AQ96PX6 553 aaPredicted RBP10.3□□□□□ -0.76
SYNE1-211ENST00000413186 UTP14AQ9BVJ6 771 aaKnown RBP10.3□□□□□ -0.76
SYNE1-211ENST00000413186 L1TD1Q5T7N2 865 aaKnown RBP10.29□□□□□ -0.76
SYNE1-211ENST00000413186 GBP4Q96PP9 640 aa10.29□□□□□ -0.76
SYNE1-211ENST00000413186 TRIM34Q9BYJ4 488 aa10.29□□□□□ -0.76
SYNE1-211ENST00000413186 NLRP3Q96P20 1036 aa10.29□□□□□ -0.76
SYNE1-211ENST00000413186 DNAJC2Q99543 621 aaKnown RBP10.29□□□□□ -0.76
SYNE1-211ENST00000413186 HSPA1LP34931 641 aa10.29□□□□□ -0.76
SYNE1-211ENST00000413186 KRT27Q7Z3Y8 459 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms