RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 CHMP4AQ9BY43 222 aa8.48□□□□□ -1.05
VPS41-204ENST00000413141 API5Q9BZZ5 524 aaKnown RBP8.48□□□□□ -1.05
VPS41-204ENST00000413141 COG6Q9Y2V7 657 aa8.48□□□□□ -1.05
VPS41-204ENST00000413141 TJP1Q07157 1748 aa8.48□□□□□ -1.05
VPS41-204ENST00000413141 EIF2S2P20042 333 aaKnown RBP8.47□□□□□ -1.05
VPS41-204ENST00000413141 FLIIQ13045 1269 aa8.47□□□□□ -1.05
VPS41-204ENST00000413141 G2E3Q7L622 706 aa8.47□□□□□ -1.05
VPS41-204ENST00000413141 TMEM57Q8N5G2 664 aa8.47□□□□□ -1.05
VPS41-204ENST00000413141 FBXO41Q8TF61 875 aa8.47□□□□□ -1.05
VPS41-204ENST00000413141 PIGBQ92521 554 aa8.47□□□□□ -1.05
VPS41-204ENST00000413141 FOXD4L1Q9NU39 408 aa8.47□□□□□ -1.05
VPS41-204ENST00000413141 CHPF2Q9P2E5 772 aa8.47□□□□□ -1.05
VPS41-204ENST00000413141 A0A0G2JS52 829 aa8.46□□□□□ -1.06
VPS41-204ENST00000413141 SNRPA1P09661 255 aaKnown RBP8.46□□□□□ -1.06
VPS41-204ENST00000413141 MYT1Q01538 1121 aa8.46□□□□□ -1.06
VPS41-204ENST00000413141 B4GALNT3Q6L9W6 998 aa8.46□□□□□ -1.06
VPS41-204ENST00000413141 ITPRIPQ8IWB1 547 aa8.46□□□□□ -1.06
VPS41-204ENST00000413141 DDX19BQ9UMR2 479 aa8.46□□□□□ -1.06
VPS41-204ENST00000413141 ZBTB22O15209 634 aa8.45□□□□□ -1.06
VPS41-204ENST00000413141 ONECUT3O60422 494 aaPredicted RBP8.45□□□□□ -1.06
VPS41-204ENST00000413141 PRIM1P49642 420 aaKnown RBP8.45□□□□□ -1.06
VPS41-204ENST00000413141 AAMPQ13685 434 aa8.45□□□□□ -1.06
VPS41-204ENST00000413141 PROSER3Q2NL68 480 aa8.45□□□□□ -1.06
VPS41-204ENST00000413141 SYTL4Q96C24 671 aaPredicted RBP8.45□□□□□ -1.06
VPS41-204ENST00000413141 CCDC136Q96JN2 1154 aa8.45□□□□□ -1.06
VPS41-204ENST00000413141 ATG3Q9NT62 314 aa8.45□□□□□ -1.06
VPS41-204ENST00000413141 DBF4Q9UBU7 674 aaPredicted RBP8.45□□□□□ -1.06
VPS41-204ENST00000413141 ASAP1Q9ULH1 1129 aa8.45□□□□□ -1.06
VPS41-204ENST00000413141 ZNF831Q5JPB2 1677 aa8.45□□□□□ -1.06
VPS41-204ENST00000413141 RREB1Q92766 1687 aa8.44□□□□□ -1.06
VPS41-204ENST00000413141 PTCD1O75127 700 aaKnown RBP8.44□□□□□ -1.06
VPS41-204ENST00000413141 ANXA1P04083 346 aa8.44□□□□□ -1.06
VPS41-204ENST00000413141 FKBP5Q13451 457 aaPredicted RBP8.44□□□□□ -1.06
VPS41-204ENST00000413141 PDIA6Q15084 440 aa8.44□□□□□ -1.06
VPS41-204ENST00000413141 ZNF772Q68DY9 489 aaPredicted RBP8.44□□□□□ -1.06
VPS41-204ENST00000413141 INTS3Q68E01 1043 aaKnown RBP8.44□□□□□ -1.06
VPS41-204ENST00000413141 VSIG10Q8N0Z9 540 aa8.44□□□□□ -1.06
VPS41-204ENST00000413141 ACSBG1Q96GR2 724 aa8.44□□□□□ -1.06
VPS41-204ENST00000413141 PHAXQ9H814 394 aaKnown RBP8.44□□□□□ -1.06
VPS41-204ENST00000413141 QTRT2Q9H974 415 aaKnown RBP8.44□□□□□ -1.06
VPS41-204ENST00000413141 DDX21Q9NR30 783 aaKnown RBP eCLIP8.44□□□□□ -1.06
VPS41-204ENST00000413141 USP16Q9Y5T5 823 aa8.44□□□□□ -1.06
VPS41-204ENST00000413141 BTAF1O14981 1849 aa8.44□□□□□ -1.06
VPS41-204ENST00000413141 BRWD3Q6RI45 1802 aa8.44□□□□□ -1.06
VPS41-204ENST00000413141 ERBB4Q15303 1308 aa8.44□□□□□ -1.06
VPS41-204ENST00000413141 ADCY9O60503 1353 aa8.44□□□□□ -1.06
VPS41-204ENST00000413141 ATP10DQ9P241 1426 aa8.44□□□□□ -1.06
VPS41-204ENST00000413141 COL5A3P25940 1745 aaPredicted RBP8.43□□□□□ -1.06
VPS41-204ENST00000413141 NUP188Q5SRE5 1749 aa8.43□□□□□ -1.06
VPS41-204ENST00000413141 ARFGEF2Q9Y6D5 1785 aa8.43□□□□□ -1.06
VPS41-204ENST00000413141 SBF2Q86WG5 1849 aa8.43□□□□□ -1.06
VPS41-204ENST00000413141 F6X3S4 739 aa8.43□□□□□ -1.06
VPS41-204ENST00000413141 SEPT12Q8IYM1 358 aa8.43□□□□□ -1.06
VPS41-204ENST00000413141 HYPKQ9NX55 129 aa8.43□□□□□ -1.06
VPS41-204ENST00000413141 PALLDQ8WX93 1383 aa8.43□□□□□ -1.06
VPS41-204ENST00000413141 CCT4P50991 539 aaKnown RBP8.42□□□□□ -1.06
VPS41-204ENST00000413141 LRP10Q7Z4F1 713 aa8.42□□□□□ -1.06
VPS41-204ENST00000413141 LY75O60449 1722 aa8.41□□□□□ -1.06
VPS41-204ENST00000413141 KDM2BQ8NHM5 1336 aa8.41□□□□□ -1.06
VPS41-204ENST00000413141 ZBTB7BO15156 539 aaPredicted RBP8.41□□□□□ -1.06
VPS41-204ENST00000413141 KCNQ2O43526 872 aa8.41□□□□□ -1.06
VPS41-204ENST00000413141 MYL6BP14649 208 aa8.41□□□□□ -1.06
VPS41-204ENST00000413141 RBM6P78332 1123 aaKnown RBP8.41□□□□□ -1.06
VPS41-204ENST00000413141 SLC4A10Q6U841 1118 aa8.41□□□□□ -1.06
VPS41-204ENST00000413141 DNAJC10Q8IXB1 793 aa8.41□□□□□ -1.06
VPS41-204ENST00000413141 SLC4A9Q96Q91 983 aa8.41□□□□□ -1.06
VPS41-204ENST00000413141 RBM42Q9BTD8 480 aaKnown RBP8.41□□□□□ -1.06
VPS41-204ENST00000413141 TEX13AQ9BXU3 409 aaPredicted RBP8.41□□□□□ -1.06
VPS41-204ENST00000413141 CHMP4BQ9H444 224 aaKnown RBP8.41□□□□□ -1.06
VPS41-204ENST00000413141 ZBTB40Q9NUA8 1239 aa8.41□□□□□ -1.06
VPS41-204ENST00000413141 PI4KAP2A4QPH2 592 aa8.4□□□□□ -1.06
VPS41-204ENST00000413141 NBPF26B4DH59 902 aa8.4□□□□□ -1.06
VPS41-204ENST00000413141 DDX58O95786 925 aaKnown RBP8.4□□□□□ -1.06
VPS41-204ENST00000413141 PIP4K2AP48426 406 aaPredicted RBP8.4□□□□□ -1.06
VPS41-204ENST00000413141 FAM182BQ5T319 152 aa8.4□□□□□ -1.06
VPS41-204ENST00000413141 NBPF14Q5TI25 921 aa8.4□□□□□ -1.06
VPS41-204ENST00000413141 NBPF10Q6P3W6 841 aaKnown RBP8.4□□□□□ -1.06
VPS41-204ENST00000413141 NBPF15Q8N660 670 aa8.4□□□□□ -1.06
VPS41-204ENST00000413141 PI4KAP1Q8N8J0 262 aa8.4□□□□□ -1.06
VPS41-204ENST00000413141 XAGE3Q8WTP9 111 aa8.4□□□□□ -1.06
VPS41-204ENST00000413141 DNAAF4Q8WXU2 420 aa8.4□□□□□ -1.06
VPS41-204ENST00000413141 SMARCC1Q92922 1105 aaPredicted RBP8.4□□□□□ -1.06
VPS41-204ENST00000413141 PCDHB15Q9Y5E8 787 aa8.4□□□□□ -1.06
VPS41-204ENST00000413141 IBTKQ9P2D0 1353 aaPredicted RBP8.39□□□□□ -1.07
VPS41-204ENST00000413141 LOC102724428A0A0B4J2F2 783 aa8.39□□□□□ -1.07
VPS41-204ENST00000413141 A1BGP04217 495 aa8.39□□□□□ -1.07
VPS41-204ENST00000413141 SIK1P57059 783 aa8.39□□□□□ -1.07
VPS41-204ENST00000413141 BEND3Q5T5X7 828 aa8.39□□□□□ -1.07
VPS41-204ENST00000413141 KSR2Q6VAB6 950 aa8.39□□□□□ -1.07
VPS41-204ENST00000413141 CENPQQ7L2Z9 268 aaPredicted RBP8.39□□□□□ -1.07
VPS41-204ENST00000413141 MEIS3Q99687 375 aa8.39□□□□□ -1.07
VPS41-204ENST00000413141 MAP3K2Q9Y2U5 619 aa8.39□□□□□ -1.07
VPS41-204ENST00000413141 STARD3NLO95772 234 aa8.38□□□□□ -1.07
VPS41-204ENST00000413141 CYP19A1P11511 503 aaPredicted RBP8.38□□□□□ -1.07
VPS41-204ENST00000413141 AIMP1Q12904 312 aaKnown RBP8.38□□□□□ -1.07
VPS41-204ENST00000413141 COPS6Q7L5N1 327 aa8.38□□□□□ -1.07
VPS41-204ENST00000413141 PTF1AQ7RTS3 328 aa8.38□□□□□ -1.07
VPS41-204ENST00000413141 KRT27Q7Z3Y8 459 aa8.38□□□□□ -1.07
VPS41-204ENST00000413141 SRCIN1Q9C0H9 1055 aa8.38□□□□□ -1.07
VPS41-204ENST00000413141 C1orf115Q9H7X2 142 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms