RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 OTUD7AQ8TE49 926 aaPredicted RBP6.96□□□□□ -1.29
CCDC88A-203ENST00000412148 ROBO2Q9HCK4 1378 aa6.96□□□□□ -1.29
CCDC88A-203ENST00000412148 IGSF3O75054 1194 aa6.96□□□□□ -1.3
CCDC88A-203ENST00000412148 PRPF40AO75400 957 aaKnown RBP6.96□□□□□ -1.3
CCDC88A-203ENST00000412148 ECM2O94769 699 aaPredicted RBP6.96□□□□□ -1.3
CCDC88A-203ENST00000412148 SULT6B1Q6IMI4 303 aa6.96□□□□□ -1.3
CCDC88A-203ENST00000412148 SASS6Q6UVJ0 657 aa6.96□□□□□ -1.3
CCDC88A-203ENST00000412148 SSH3Q8TE77 659 aa6.96□□□□□ -1.3
CCDC88A-203ENST00000412148 KCNB2Q92953 911 aa6.96□□□□□ -1.3
CCDC88A-203ENST00000412148 STAG3Q9UJ98 1225 aa6.96□□□□□ -1.3
CCDC88A-203ENST00000412148 U3KPZ7 1027 aaPredicted RBP6.96□□□□□ -1.3
CCDC88A-203ENST00000412148 NCAPD2Q15021 1401 aa6.96□□□□□ -1.3
CCDC88A-203ENST00000412148 POLA2Q14181 598 aa6.95□□□□□ -1.3
CCDC88A-203ENST00000412148 CCDC30Q5VVM6 783 aa6.95□□□□□ -1.3
CCDC88A-203ENST00000412148 PRIMPOLQ96LW4 560 aa6.95□□□□□ -1.3
CCDC88A-203ENST00000412148 TSPY26PQ9H489 355 aa6.95□□□□□ -1.3
CCDC88A-203ENST00000412148 CCDC171Q6TFL3 1326 aa6.95□□□□□ -1.3
CCDC88A-203ENST00000412148 MRC1P22897 1456 aa6.95□□□□□ -1.3
CCDC88A-203ENST00000412148 TNRQ92752 1358 aa6.95□□□□□ -1.3
CCDC88A-203ENST00000412148 ELL2O00472 640 aaPredicted RBP6.95□□□□□ -1.3
CCDC88A-203ENST00000412148 RRS1Q15050 365 aaKnown RBP6.95□□□□□ -1.3
CCDC88A-203ENST00000412148 RAD50Q92878 1312 aa6.95□□□□□ -1.3
CCDC88A-203ENST00000412148 TPM3P06753 285 aa6.94□□□□□ -1.3
CCDC88A-203ENST00000412148 NEK4P51957 841 aa6.94□□□□□ -1.3
CCDC88A-203ENST00000412148 NECTIN2Q92692 538 aa6.94□□□□□ -1.3
CCDC88A-203ENST00000412148 TTC14Q96N46 770 aa6.94□□□□□ -1.3
CCDC88A-203ENST00000412148 ACEP12821 1306 aa6.94□□□□□ -1.3
CCDC88A-203ENST00000412148 CEMIPQ8WUJ3 1361 aa6.94□□□□□ -1.3
CCDC88A-203ENST00000412148 ABCC6O95255 1503 aa6.94□□□□□ -1.3
CCDC88A-203ENST00000412148 FBLN1P23142 703 aa6.94□□□□□ -1.3
CCDC88A-203ENST00000412148 AEBP1Q8IUX7 1158 aa6.94□□□□□ -1.3
CCDC88A-203ENST00000412148 TM6SF1Q9BZW5 370 aa6.94□□□□□ -1.3
CCDC88A-203ENST00000412148 SNRKQ9NRH2 765 aa6.94□□□□□ -1.3
CCDC88A-203ENST00000412148 SPTLC3Q9NUV7 552 aa6.94□□□□□ -1.3
CCDC88A-203ENST00000412148 ZRANB1Q9UGI0 708 aa6.94□□□□□ -1.3
CCDC88A-203ENST00000412148 MAP3K19Q56UN5 1328 aa6.94□□□□□ -1.3
CCDC88A-203ENST00000412148 HMGN5P82970 282 aaKnown RBP6.94□□□□□ -1.3
CCDC88A-203ENST00000412148 DCTN1Q14203 1278 aa6.94□□□□□ -1.3
CCDC88A-203ENST00000412148 STK31Q9BXU1 1019 aa6.94□□□□□ -1.3
CCDC88A-203ENST00000412148 ATP6V1DQ9Y5K8 247 aa6.94□□□□□ -1.3
CCDC88A-203ENST00000412148 TTC41PQ6P2S7 1318 aa6.93□□□□□ -1.3
CCDC88A-203ENST00000412148 SMARCA5O60264 1052 aaPredicted RBP6.93□□□□□ -1.3
CCDC88A-203ENST00000412148 MTX1Q13505 466 aa6.93□□□□□ -1.3
CCDC88A-203ENST00000412148 CCDC183Q5T5S1 534 aa6.93□□□□□ -1.3
CCDC88A-203ENST00000412148 PIBF1Q8WXW3 757 aa6.93□□□□□ -1.3
CCDC88A-203ENST00000412148 ALDH8A1Q9H2A2 487 aaPredicted RBP6.93□□□□□ -1.3
CCDC88A-203ENST00000412148 USP25Q9UHP3 1055 aa6.93□□□□□ -1.3
CCDC88A-203ENST00000412148 NFAT5O94916 1531 aa6.93□□□□□ -1.3
CCDC88A-203ENST00000412148 SYCE3A1L190 88 aa6.93□□□□□ -1.3
CCDC88A-203ENST00000412148 NCLP19338 710 aaKnown RBP6.93□□□□□ -1.3
CCDC88A-203ENST00000412148 UBE2HP62256 183 aa6.93□□□□□ -1.3
CCDC88A-203ENST00000412148 KIAA2012Q0VF49 1180 aa6.93□□□□□ -1.3
CCDC88A-203ENST00000412148 FLIIQ13045 1269 aa6.93□□□□□ -1.3
CCDC88A-203ENST00000412148 HSP90AB4PQ58FF6 505 aa6.93□□□□□ -1.3
CCDC88A-203ENST00000412148 FUCA2Q9BTY2 467 aa6.93□□□□□ -1.3
CCDC88A-203ENST00000412148 PLEKHG2Q9H7P9 1386 aa6.93□□□□□ -1.3
CCDC88A-203ENST00000412148 SGSM2O43147 1006 aa6.92□□□□□ -1.3
CCDC88A-203ENST00000412148 MTHFSDQ2M296 383 aaKnown RBP6.92□□□□□ -1.3
CCDC88A-203ENST00000412148 MCM10Q7L590 875 aa6.92□□□□□ -1.3
CCDC88A-203ENST00000412148 MYRIPQ8NFW9 859 aa6.92□□□□□ -1.3
CCDC88A-203ENST00000412148 RTF1Q92541 710 aaKnown RBP6.92□□□□□ -1.3
CCDC88A-203ENST00000412148 TSPYL4Q9UJ04 414 aa6.92□□□□□ -1.3
CCDC88A-203ENST00000412148 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.92□□□□□ -1.3
CCDC88A-203ENST00000412148 JCADQ9P266 1359 aa6.92□□□□□ -1.3
CCDC88A-203ENST00000412148 TXNDC2Q86VQ3 553 aa6.92□□□□□ -1.3
CCDC88A-203ENST00000412148 PI4K2BQ8TCG2 481 aa6.92□□□□□ -1.3
CCDC88A-203ENST00000412148 ZSCAN31Q96LW9 406 aaPredicted RBP6.92□□□□□ -1.3
CCDC88A-203ENST00000412148 NSFL1CQ9UNZ2 370 aaKnown RBP6.92□□□□□ -1.3
CCDC88A-203ENST00000412148 ELP1O95163 1332 aa6.92□□□□□ -1.3
CCDC88A-203ENST00000412148 KRT24Q2M2I5 525 aa6.91□□□□□ -1.3
CCDC88A-203ENST00000412148 G2E3Q7L622 706 aa6.91□□□□□ -1.3
CCDC88A-203ENST00000412148 SMAP1Q8IYB5 467 aaPredicted RBP6.91□□□□□ -1.3
CCDC88A-203ENST00000412148 SH2B1Q9NRF2 756 aaPredicted RBP6.91□□□□□ -1.3
CCDC88A-203ENST00000412148 RBM27Q9P2N5 1060 aaKnown RBP6.91□□□□□ -1.3
CCDC88A-203ENST00000412148 PALD1Q9ULE6 856 aa6.91□□□□□ -1.3
CCDC88A-203ENST00000412148 DDX60Q8IY21 1712 aaKnown RBP6.91□□□□□ -1.3
CCDC88A-203ENST00000412148 RGPD2P0DJD1 1756 aa6.91□□□□□ -1.3
CCDC88A-203ENST00000412148 SCN11AQ9UI33 1791 aa6.91□□□□□ -1.3
CCDC88A-203ENST00000412148 GNAT3A8MTJ3 354 aa6.91□□□□□ -1.3
CCDC88A-203ENST00000412148 ZSCAN22P10073 491 aaPredicted RBP6.91□□□□□ -1.3
CCDC88A-203ENST00000412148 HSP90AB2PQ58FF8 381 aa6.91□□□□□ -1.3
CCDC88A-203ENST00000412148 TICAM2Q86XR7 235 aa6.91□□□□□ -1.3
CCDC88A-203ENST00000412148 KIF1BPQ96EK5 621 aa6.91□□□□□ -1.3
CCDC88A-203ENST00000412148 LSG1Q9H089 658 aaKnown RBP6.91□□□□□ -1.3
CCDC88A-203ENST00000412148 USP44Q9H0E7 712 aa6.91□□□□□ -1.3
CCDC88A-203ENST00000412148 HDAC5Q9UQL6 1122 aa6.91□□□□□ -1.3
CCDC88A-203ENST00000412148 LAMA4Q16363 1823 aa6.91□□□□□ -1.3
CCDC88A-203ENST00000412148 SPEF2Q9C093 1822 aa6.91□□□□□ -1.3
CCDC88A-203ENST00000412148 UQCRHLA0A096LP55 91 aa6.9□□□□□ -1.3
CCDC88A-203ENST00000412148 PNMA6EA0A0J9YXQ4 647 aa6.9□□□□□ -1.3
CCDC88A-203ENST00000412148 UQCRHP07919 91 aa6.9□□□□□ -1.3
CCDC88A-203ENST00000412148 LIMCH1Q9UPQ0 1083 aa6.9□□□□□ -1.3
CCDC88A-203ENST00000412148 FKBP5Q13451 457 aaPredicted RBP6.9□□□□□ -1.3
CCDC88A-203ENST00000412148 VPS53Q5VIR6 699 aa6.9□□□□□ -1.3
CCDC88A-203ENST00000412148 USP48Q86UV5 1035 aa6.9□□□□□ -1.3
CCDC88A-203ENST00000412148 CNTROBQ8N137 903 aa6.9□□□□□ -1.3
CCDC88A-203ENST00000412148 TBX22Q9Y458 520 aa6.9□□□□□ -1.3
CCDC88A-203ENST00000412148 RFX7Q2KHR2 1363 aa6.9□□□□□ -1.3
CCDC88A-203ENST00000412148 FER1L4A9Z1Z3 1794 aa6.9□□□□□ -1.3
CCDC88A-203ENST00000412148 ZNF142P52746 1687 aaPredicted RBP6.9□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms