RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 GLI3P10071 1580 aa16.85■□□□□ 0.29
LIMS1-205ENST00000410093 SLC4A10Q6U841 1118 aa16.84■□□□□ 0.29
LIMS1-205ENST00000410093 RAPGEF4Q8WZA2 1011 aa16.84■□□□□ 0.29
LIMS1-205ENST00000410093 SPG7Q9UQ90 795 aa16.84■□□□□ 0.29
LIMS1-205ENST00000410093 HEG1Q9ULI3 1381 aa16.83■□□□□ 0.28
LIMS1-205ENST00000410093 ONECUT3O60422 494 aaPredicted RBP16.83■□□□□ 0.28
LIMS1-205ENST00000410093 CDC45O75419 566 aa16.83■□□□□ 0.28
LIMS1-205ENST00000410093 KRT27Q7Z3Y8 459 aa16.83■□□□□ 0.28
LIMS1-205ENST00000410093 DBF4Q9UBU7 674 aaPredicted RBP16.83■□□□□ 0.28
LIMS1-205ENST00000410093 SPATA31A5Q5VU36 1347 aa16.82■□□□□ 0.28
LIMS1-205ENST00000410093 SPATA31A7Q8IWB4 1347 aa16.82■□□□□ 0.28
LIMS1-205ENST00000410093 TATP17735 454 aaPredicted RBP16.82■□□□□ 0.28
LIMS1-205ENST00000410093 SF3B2Q13435 895 aaKnown RBP16.82■□□□□ 0.28
LIMS1-205ENST00000410093 PLEKHM2Q8IWE5 1019 aa16.82■□□□□ 0.28
LIMS1-205ENST00000410093 OSBPL3Q9H4L5 887 aa16.82■□□□□ 0.28
LIMS1-205ENST00000410093 LGR6Q9HBX8 967 aa16.82■□□□□ 0.28
LIMS1-205ENST00000410093 PKD1L3Q7Z443 1732 aa16.81■□□□□ 0.28
LIMS1-205ENST00000410093 HSP90AB1P08238 724 aaKnown RBP16.81■□□□□ 0.28
LIMS1-205ENST00000410093 ATP8B2P98198 1209 aa16.81■□□□□ 0.28
LIMS1-205ENST00000410093 CASC1Q6TDU7 716 aa16.81■□□□□ 0.28
LIMS1-205ENST00000410093 MFAP1P55081 439 aaKnown RBP16.8■□□□□ 0.28
LIMS1-205ENST00000410093 TTC22Q5TAA0 569 aa16.8■□□□□ 0.28
LIMS1-205ENST00000410093 AXIN2Q9Y2T1 843 aa16.8■□□□□ 0.28
LIMS1-205ENST00000410093 F6X3S4 739 aa16.8■□□□□ 0.28
LIMS1-205ENST00000410093 SRCIN1Q9C0H9 1055 aa16.8■□□□□ 0.28
LIMS1-205ENST00000410093 NRAPQ86VF7 1730 aa16.8■□□□□ 0.28
LIMS1-205ENST00000410093 PARP4Q9UKK3 1724 aaKnown RBP16.8■□□□□ 0.28
LIMS1-205ENST00000410093 UBTFL1P0CB47 393 aaPredicted RBP16.79■□□□□ 0.28
LIMS1-205ENST00000410093 MPRIPQ6WCQ1 1025 aa16.79■□□□□ 0.28
LIMS1-205ENST00000410093 HYPKQ9NX55 129 aa16.79■□□□□ 0.28
LIMS1-205ENST00000410093 SPATA31A1Q5TZJ5 1347 aa16.78■□□□□ 0.28
LIMS1-205ENST00000410093 MRC1P22897 1456 aa16.78■□□□□ 0.28
LIMS1-205ENST00000410093 NBR1Q14596 966 aa16.78■□□□□ 0.28
LIMS1-205ENST00000410093 SNX21Q969T3 373 aa16.78■□□□□ 0.28
LIMS1-205ENST00000410093 RAB11FIP3O75154 756 aa16.77■□□□□ 0.28
LIMS1-205ENST00000410093 GIGYF1O75420 1035 aaPredicted RBP16.77■□□□□ 0.28
LIMS1-205ENST00000410093 ALDH1L1O75891 902 aa16.77■□□□□ 0.28
LIMS1-205ENST00000410093 IFNL2Q8IZJ0 200 aa16.77■□□□□ 0.28
LIMS1-205ENST00000410093 DNAAF4Q8WXU2 420 aa16.77■□□□□ 0.28
LIMS1-205ENST00000410093 AOX1Q06278 1338 aa16.77■□□□□ 0.27
LIMS1-205ENST00000410093 DDX58O95786 925 aaKnown RBP16.76■□□□□ 0.27
LIMS1-205ENST00000410093 HSP90AB4PQ58FF6 505 aa16.76■□□□□ 0.27
LIMS1-205ENST00000410093 TBC1D9Q6ZT07 1266 aa16.76■□□□□ 0.27
LIMS1-205ENST00000410093 IL27Q8NEV9 243 aa16.76■□□□□ 0.27
LIMS1-205ENST00000410093 LRRCC1Q9C099 1032 aa16.76■□□□□ 0.27
LIMS1-205ENST00000410093 NLRP2Q9NX02 1062 aa16.76■□□□□ 0.27
LIMS1-205ENST00000410093 LARP1Q6PKG0 1096 aaKnown RBP16.75■□□□□ 0.27
LIMS1-205ENST00000410093 DCAF5Q96JK2 942 aa16.75■□□□□ 0.27
LIMS1-205ENST00000410093 USP44Q9H0E7 712 aa16.75■□□□□ 0.27
LIMS1-205ENST00000410093 HSCBQ8IWL3 235 aa16.75■□□□□ 0.27
LIMS1-205ENST00000410093 SSH3Q8TE77 659 aa16.75■□□□□ 0.27
LIMS1-205ENST00000410093 TBC1D2Q9BYX2 928 aa16.75■□□□□ 0.27
LIMS1-205ENST00000410093 SLC52A2Q9HAB3 445 aa16.75■□□□□ 0.27
LIMS1-205ENST00000410093 CHPF2Q9P2E5 772 aa16.75■□□□□ 0.27
LIMS1-205ENST00000410093 CSB-PGBD3P0DP91 1061 aa16.74■□□□□ 0.27
LIMS1-205ENST00000410093 PHKG2P15735 406 aa16.74■□□□□ 0.27
LIMS1-205ENST00000410093 EIF2S2P20042 333 aaKnown RBP16.74■□□□□ 0.27
LIMS1-205ENST00000410093 THRAP3Q9Y2W1 955 aaKnown RBP16.74■□□□□ 0.27
LIMS1-205ENST00000410093 BRWD3Q6RI45 1802 aa16.73■□□□□ 0.27
LIMS1-205ENST00000410093 SLC4A3P48751 1232 aa16.73■□□□□ 0.27
LIMS1-205ENST00000410093 BEND3Q5T5X7 828 aa16.73■□□□□ 0.27
LIMS1-205ENST00000410093 KSR2Q6VAB6 950 aa16.73■□□□□ 0.27
LIMS1-205ENST00000410093 BARGINQ6ZT62 677 aa16.73■□□□□ 0.27
LIMS1-205ENST00000410093 TOM1L2Q6ZVM7 507 aa16.73■□□□□ 0.27
LIMS1-205ENST00000410093 DDX21Q9NR30 783 aaKnown RBP eCLIP16.73■□□□□ 0.27
LIMS1-205ENST00000410093 EP400Q96L91 3159 aa16.72■□□□□ 0.27
LIMS1-205ENST00000410093 GSPT1P15170 499 aaKnown RBP16.72■□□□□ 0.27
LIMS1-205ENST00000410093 POLA2Q14181 598 aa16.72■□□□□ 0.27
LIMS1-205ENST00000410093 NECTIN2Q92692 538 aa16.72■□□□□ 0.27
LIMS1-205ENST00000410093 PHAXQ9H814 394 aaKnown RBP16.72■□□□□ 0.27
LIMS1-205ENST00000410093 LRRFIP2Q9Y608 721 aaKnown RBP16.72■□□□□ 0.27
LIMS1-205ENST00000410093 TUBGCP6Q96RT7 1819 aa16.72■□□□□ 0.27
LIMS1-205ENST00000410093 EPB41L2O43491 1005 aaKnown RBP16.71■□□□□ 0.27
LIMS1-205ENST00000410093 REC8O95072 547 aa16.71■□□□□ 0.27
LIMS1-205ENST00000410093 MTX1Q13505 466 aa16.71■□□□□ 0.27
LIMS1-205ENST00000410093 NFKBIBQ15653 356 aa16.71■□□□□ 0.27
LIMS1-205ENST00000410093 ZNF790Q6PG37 636 aa16.71■□□□□ 0.27
LIMS1-205ENST00000410093 STAP2Q9UGK3 403 aa16.71■□□□□ 0.27
LIMS1-205ENST00000410093 MEGF6O75095 1541 aa16.71■□□□□ 0.26
LIMS1-205ENST00000410093 PI4KAP2A4QPH2 592 aa16.7■□□□□ 0.26
LIMS1-205ENST00000410093 PDE1AP54750 535 aa16.7■□□□□ 0.26
LIMS1-205ENST00000410093 PI4KAP1Q8N8J0 262 aa16.7■□□□□ 0.26
LIMS1-205ENST00000410093 KDM6AO15550 1401 aaPredicted RBP16.7■□□□□ 0.26
LIMS1-205ENST00000410093 COL5A2P05997 1499 aaPredicted RBP16.7■□□□□ 0.26
LIMS1-205ENST00000410093 BAG6P46379 1132 aa16.7■□□□□ 0.26
LIMS1-205ENST00000410093 LAMB4A4D0S4 1761 aa16.7■□□□□ 0.26
LIMS1-205ENST00000410093 WDR17Q8IZU2 1322 aa16.69■□□□□ 0.26
LIMS1-205ENST00000410093 SALL3Q9BXA9 1300 aa16.69■□□□□ 0.26
LIMS1-205ENST00000410093 ADCY9O60503 1353 aa16.69■□□□□ 0.26
LIMS1-205ENST00000410093 KCNQ3O43525 872 aa16.69■□□□□ 0.26
LIMS1-205ENST00000410093 SDSP20132 328 aa16.69■□□□□ 0.26
LIMS1-205ENST00000410093 FAM182BQ5T319 152 aa16.69■□□□□ 0.26
LIMS1-205ENST00000410093 FAM196AQ6ZSG2 479 aa16.69■□□□□ 0.26
LIMS1-205ENST00000410093 LINS1Q8NG48 757 aa16.69■□□□□ 0.26
LIMS1-205ENST00000410093 ANTXR1Q9H6X2 564 aa16.69■□□□□ 0.26
LIMS1-205ENST00000410093 ERBB4Q15303 1308 aa16.69■□□□□ 0.26
LIMS1-205ENST00000410093 KIF1BPQ96EK5 621 aa16.68■□□□□ 0.26
LIMS1-205ENST00000410093 UTYO14607 1347 aa16.68■□□□□ 0.26
LIMS1-205ENST00000410093 PNMA6EA0A0J9YXQ4 647 aa16.67■□□□□ 0.26
LIMS1-205ENST00000410093 SNRPA1P09661 255 aaKnown RBP16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms