RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 ATP5DP30049 168 aa14.86□□□□□ -0.03
COL6A3-206ENST00000409809 KLHL10Q6JEL2 608 aa14.86□□□□□ -0.03
COL6A3-206ENST00000409809 JAKMIP2Q96AA8 810 aa14.86□□□□□ -0.03
COL6A3-206ENST00000409809 CCDC77Q9BR77 488 aa14.86□□□□□ -0.03
COL6A3-206ENST00000409809 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.86□□□□□ -0.03
COL6A3-206ENST00000409809 RAI14Q9P0K7 980 aa14.86□□□□□ -0.03
COL6A3-206ENST00000409809 ATP6V1AP38606 617 aa14.86□□□□□ -0.03
COL6A3-206ENST00000409809 ZNF365Q70YC5 407 aa14.86□□□□□ -0.03
COL6A3-206ENST00000409809 NUP88Q99567 741 aaPredicted RBP14.86□□□□□ -0.03
COL6A3-206ENST00000409809 ZNF330Q9Y3S2 320 aaPredicted RBP14.86□□□□□ -0.03
COL6A3-206ENST00000409809 MAP7Q14244 749 aa14.86□□□□□ -0.03
COL6A3-206ENST00000409809 MAATS1Q7Z4T9 603 aa14.86□□□□□ -0.03
COL6A3-206ENST00000409809 FERMT1Q9BQL6 677 aa14.86□□□□□ -0.03
COL6A3-206ENST00000409809 HLTFQ14527 1009 aaKnown RBP eCLIP14.85□□□□□ -0.03
COL6A3-206ENST00000409809 FEZ2Q9UHY8 353 aaPredicted RBP14.85□□□□□ -0.03
COL6A3-206ENST00000409809 FGD6Q6ZV73 1430 aa14.85□□□□□ -0.03
COL6A3-206ENST00000409809 SETDB1Q15047 1291 aa14.85□□□□□ -0.03
COL6A3-206ENST00000409809 ANAPC4Q9UJX5 808 aa14.85□□□□□ -0.03
COL6A3-206ENST00000409809 ALDH3A1P30838 453 aa14.85□□□□□ -0.03
COL6A3-206ENST00000409809 FOXD1Q16676 465 aa14.85□□□□□ -0.03
COL6A3-206ENST00000409809 ANAPC15P60006 121 aa14.85□□□□□ -0.03
COL6A3-206ENST00000409809 TNPO1Q92973 898 aaKnown RBP14.85□□□□□ -0.03
COL6A3-206ENST00000409809 RAB34Q9BZG1 259 aa14.85□□□□□ -0.03
COL6A3-206ENST00000409809 BRD2P25440 801 aaKnown RBP14.85□□□□□ -0.03
COL6A3-206ENST00000409809 ATF7IPQ6VMQ6 1270 aa14.85□□□□□ -0.03
COL6A3-206ENST00000409809 TRIM7Q9C029 511 aa14.85□□□□□ -0.03
COL6A3-206ENST00000409809 BUB1BO60566 1050 aaPredicted RBP14.85□□□□□ -0.03
COL6A3-206ENST00000409809 CCDC129Q6ZRS4 1044 aa14.85□□□□□ -0.03
COL6A3-206ENST00000409809 CNKSR2Q8WXI2 1034 aa14.85□□□□□ -0.03
COL6A3-206ENST00000409809 PHLDB2Q86SQ0 1253 aa14.85□□□□□ -0.03
COL6A3-206ENST00000409809 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.84□□□□□ -0.03
COL6A3-206ENST00000409809 FAM200AQ8TCP9 573 aa14.84□□□□□ -0.03
COL6A3-206ENST00000409809 SOX12O15370 315 aa14.84□□□□□ -0.03
COL6A3-206ENST00000409809 BCL11BQ9C0K0 894 aaPredicted RBP14.84□□□□□ -0.03
COL6A3-206ENST00000409809 MAP4K4O95819 1239 aaPredicted RBP14.84□□□□□ -0.03
COL6A3-206ENST00000409809 TTC12Q9H892 705 aaPredicted RBP14.84□□□□□ -0.03
COL6A3-206ENST00000409809 SELENOOQ9BVL4 669 aa14.84□□□□□ -0.03
COL6A3-206ENST00000409809 USP25Q9UHP3 1055 aa14.84□□□□□ -0.03
COL6A3-206ENST00000409809 BCCIPQ9P287 314 aaKnown RBP eCLIP14.84□□□□□ -0.03
COL6A3-206ENST00000409809 ZSCAN16Q9H4T2 348 aaPredicted RBP14.84□□□□□ -0.03
COL6A3-206ENST00000409809 SAFB2Q14151 953 aaKnown RBP eCLIP14.83□□□□□ -0.03
COL6A3-206ENST00000409809 CETN1Q12798 172 aa14.83□□□□□ -0.04
COL6A3-206ENST00000409809 WASHC4Q2M389 1173 aa14.83□□□□□ -0.04
COL6A3-206ENST00000409809 U3KPZ7 1027 aaPredicted RBP14.83□□□□□ -0.04
COL6A3-206ENST00000409809 CCDC178Q5BJE1 867 aa14.83□□□□□ -0.04
COL6A3-206ENST00000409809 SPAG1Q07617 926 aa14.83□□□□□ -0.04
COL6A3-206ENST00000409809 AEBP2Q6ZN18 517 aaPredicted RBP14.83□□□□□ -0.04
COL6A3-206ENST00000409809 STK26Q9P289 416 aa14.83□□□□□ -0.04
COL6A3-206ENST00000409809 SPDYE4A6NLX3 237 aa14.83□□□□□ -0.04
COL6A3-206ENST00000409809 SLC8A1P32418 973 aa14.83□□□□□ -0.04
COL6A3-206ENST00000409809 HECW1Q76N89 1606 aa14.83□□□□□ -0.04
COL6A3-206ENST00000409809 ZNF853P0CG23 659 aa14.83□□□□□ -0.04
COL6A3-206ENST00000409809 TSGA10Q9BZW7 698 aa14.83□□□□□ -0.04
COL6A3-206ENST00000409809 RABGAP1Q9Y3P9 1069 aa14.83□□□□□ -0.04
COL6A3-206ENST00000409809 CACNA2D4Q7Z3S7 1137 aa14.82□□□□□ -0.04
COL6A3-206ENST00000409809 ARHGAP24Q8N264 748 aa14.82□□□□□ -0.04
COL6A3-206ENST00000409809 STMN2Q93045 179 aa14.82□□□□□ -0.04
COL6A3-206ENST00000409809 CCDC69A6NI79 296 aa14.82□□□□□ -0.04
COL6A3-206ENST00000409809 STMN1P16949 149 aa14.82□□□□□ -0.04
COL6A3-206ENST00000409809 GOPCQ9HD26 462 aa14.82□□□□□ -0.04
COL6A3-206ENST00000409809 ZNF165P49910 485 aa14.82□□□□□ -0.04
COL6A3-206ENST00000409809 ERO1AQ96HE7 468 aa14.82□□□□□ -0.04
COL6A3-206ENST00000409809 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.82□□□□□ -0.04
COL6A3-206ENST00000409809 CCDC12Q8WUD4 166 aaPredicted RBP14.82□□□□□ -0.04
COL6A3-206ENST00000409809 CTNNBL1Q8WYA6 563 aaPredicted RBP14.82□□□□□ -0.04
COL6A3-206ENST00000409809 CLNS1AP54105 237 aaKnown RBP14.82□□□□□ -0.04
COL6A3-206ENST00000409809 ZSCAN23Q3MJ62 389 aa14.82□□□□□ -0.04
COL6A3-206ENST00000409809 HFM1A2PYH4 1435 aa14.82□□□□□ -0.04
COL6A3-206ENST00000409809 CCDC160A6NGH7 325 aa14.81□□□□□ -0.04
COL6A3-206ENST00000409809 IRX4P78413 519 aa14.81□□□□□ -0.04
COL6A3-206ENST00000409809 LRRC45Q96CN5 670 aa14.81□□□□□ -0.04
COL6A3-206ENST00000409809 SCLT1Q96NL6 688 aa14.81□□□□□ -0.04
COL6A3-206ENST00000409809 HMGXB3Q12766 1538 aa14.81□□□□□ -0.04
COL6A3-206ENST00000409809 GIGYF1O75420 1035 aaPredicted RBP14.81□□□□□ -0.04
COL6A3-206ENST00000409809 GGT6Q6P531 493 aa14.81□□□□□ -0.04
COL6A3-206ENST00000409809 ZMAT2Q96NC0 199 aaKnown RBP14.81□□□□□ -0.04
COL6A3-206ENST00000409809 GNL3LQ9NVN8 582 aaKnown RBP14.81□□□□□ -0.04
COL6A3-206ENST00000409809 FHOD3Q2V2M9 1422 aa14.81□□□□□ -0.04
COL6A3-206ENST00000409809 RAB11FIP3O75154 756 aa14.81□□□□□ -0.04
COL6A3-206ENST00000409809 TACO1Q9BSH4 297 aaKnown RBP14.81□□□□□ -0.04
COL6A3-206ENST00000409809 HMGB2P26583 209 aaKnown RBP14.81□□□□□ -0.04
COL6A3-206ENST00000409809 FBXO3Q9UK99 471 aa14.81□□□□□ -0.04
COL6A3-206ENST00000409809 ABCC11Q96J66 1382 aa14.81□□□□□ -0.04
COL6A3-206ENST00000409809 CLUL1Q15846 466 aa14.81□□□□□ -0.04
COL6A3-206ENST00000409809 GPRASP1Q5JY77 1395 aa14.81□□□□□ -0.04
COL6A3-206ENST00000409809 ATP2A1O14983 1001 aa14.81□□□□□ -0.04
COL6A3-206ENST00000409809 UTP14CQ5TAP6 766 aaKnown RBP14.81□□□□□ -0.04
COL6A3-206ENST00000409809 NGDNQ8NEJ9 315 aaKnown RBP14.81□□□□□ -0.04
COL6A3-206ENST00000409809 VAV2P52735 878 aa14.81□□□□□ -0.04
COL6A3-206ENST00000409809 GNG11P61952 73 aa14.81□□□□□ -0.04
COL6A3-206ENST00000409809 UBE4AQ14139 1066 aa14.81□□□□□ -0.04
COL6A3-206ENST00000409809 CCDC40Q4G0X9 1142 aa14.81□□□□□ -0.04
COL6A3-206ENST00000409809 RPAP2Q8IXW5 612 aaPredicted RBP14.81□□□□□ -0.04
COL6A3-206ENST00000409809 TSNARE1Q96NA8 513 aa14.81□□□□□ -0.04
COL6A3-206ENST00000409809 SPATS2LQ9NUQ6 558 aaKnown RBP14.8□□□□□ -0.04
COL6A3-206ENST00000409809 TDRD9Q8NDG6 1382 aaKnown RBP14.8□□□□□ -0.04
COL6A3-206ENST00000409809 HNRNPMP52272 730 aaKnown RBP eCLIP14.8□□□□□ -0.04
COL6A3-206ENST00000409809 IQCGQ9H095 443 aaKnown RBP14.8□□□□□ -0.04
COL6A3-206ENST00000409809 JADE2Q9NQC1 790 aa14.8□□□□□ -0.04
COL6A3-206ENST00000409809 PTPRGP23470 1445 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms