RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 MRC1P22897 1456 aa24.88■■□□□ 1.57
USP39-204ENST00000409766 SALL3Q9BXA9 1300 aa24.88■■□□□ 1.57
USP39-204ENST00000409766 CYP27B1O15528 508 aa24.88■■□□□ 1.57
USP39-204ENST00000409766 EIF5BO60841 1220 aaKnown RBP24.88■■□□□ 1.57
USP39-204ENST00000409766 NBPF7P0C2Y1 421 aaPredicted RBP24.88■■□□□ 1.57
USP39-204ENST00000409766 PDE1AP54750 535 aa24.88■■□□□ 1.57
USP39-204ENST00000409766 KIF2CQ99661 725 aa24.87■■□□□ 1.57
USP39-204ENST00000409766 HYPKQ9NX55 129 aa24.87■■□□□ 1.57
USP39-204ENST00000409766 C5P01031 1676 aa24.86■■□□□ 1.57
USP39-204ENST00000409766 SLC39A6Q13433 755 aa24.86■■□□□ 1.57
USP39-204ENST00000409766 DCAF5Q96JK2 942 aa24.86■■□□□ 1.57
USP39-204ENST00000409766 POLA2Q14181 598 aa24.86■■□□□ 1.57
USP39-204ENST00000409766 KSR2Q6VAB6 950 aa24.86■■□□□ 1.57
USP39-204ENST00000409766 SLKQ9H2G2 1235 aaPredicted RBP24.86■■□□□ 1.57
USP39-204ENST00000409766 DDX21Q9NR30 783 aaKnown RBP eCLIP24.86■■□□□ 1.57
USP39-204ENST00000409766 MAP3K2Q9Y2U5 619 aa24.85■■□□□ 1.57
USP39-204ENST00000409766 PDIA6Q15084 440 aa24.85■■□□□ 1.57
USP39-204ENST00000409766 PPP1R42Q7Z4L9 355 aa24.85■■□□□ 1.57
USP39-204ENST00000409766 TUBGCP6Q96RT7 1819 aa24.84■■□□□ 1.57
USP39-204ENST00000409766 SNX21Q969T3 373 aa24.84■■□□□ 1.57
USP39-204ENST00000409766 PRDM11Q9NQV5 511 aa24.84■■□□□ 1.57
USP39-204ENST00000409766 WDR17Q8IZU2 1322 aa24.83■■□□□ 1.57
USP39-204ENST00000409766 ALDH1L1O75891 902 aa24.83■■□□□ 1.56
USP39-204ENST00000409766 ABCA3Q99758 1704 aa24.82■■□□□ 1.56
USP39-204ENST00000409766 HSP90AB1P08238 724 aaKnown RBP24.82■■□□□ 1.56
USP39-204ENST00000409766 DEKP35659 375 aaKnown RBP24.81■■□□□ 1.56
USP39-204ENST00000409766 HSCBQ8IWL3 235 aa24.81■■□□□ 1.56
USP39-204ENST00000409766 PARP4Q9UKK3 1724 aaKnown RBP24.81■■□□□ 1.56
USP39-204ENST00000409766 MX1P20591 662 aa24.81■■□□□ 1.56
USP39-204ENST00000409766 SRGAP3O43295 1099 aa24.8■■□□□ 1.56
USP39-204ENST00000409766 RAB11FIP3O75154 756 aa24.8■■□□□ 1.56
USP39-204ENST00000409766 CASC1Q6TDU7 716 aa24.8■■□□□ 1.56
USP39-204ENST00000409766 ZNF496Q96IT1 587 aaPredicted RBP24.8■■□□□ 1.56
USP39-204ENST00000409766 COL5A2P05997 1499 aaPredicted RBP24.8■■□□□ 1.56
USP39-204ENST00000409766 STAP2Q9UGK3 403 aa24.79■■□□□ 1.56
USP39-204ENST00000409766 FRAT2O75474 233 aaPredicted RBP24.79■■□□□ 1.56
USP39-204ENST00000409766 DDX58O95786 925 aaKnown RBP24.78■■□□□ 1.56
USP39-204ENST00000409766 SURF6O75683 361 aaKnown RBP24.78■■□□□ 1.56
USP39-204ENST00000409766 MTX1Q13505 466 aa24.78■■□□□ 1.56
USP39-204ENST00000409766 USP26Q9BXU7 913 aa24.78■■□□□ 1.56
USP39-204ENST00000409766 NHSL1Q5SYE7 1610 aa24.78■■□□□ 1.56
USP39-204ENST00000409766 TSHZ3Q63HK5 1081 aa24.77■■□□□ 1.56
USP39-204ENST00000409766 TOM1L2Q6ZVM7 507 aa24.77■■□□□ 1.56
USP39-204ENST00000409766 LINS1Q8NG48 757 aa24.77■■□□□ 1.56
USP39-204ENST00000409766 CWF19L2Q2TBE0 894 aaKnown RBP24.76■■□□□ 1.55
USP39-204ENST00000409766 TTC5Q8N0Z6 440 aa24.76■■□□□ 1.55
USP39-204ENST00000409766 C9orf78Q9NZ63 289 aaPredicted RBP24.76■■□□□ 1.55
USP39-204ENST00000409766 SNRPA1P09661 255 aaKnown RBP24.76■■□□□ 1.55
USP39-204ENST00000409766 SPRYD3Q8NCJ5 442 aa24.76■■□□□ 1.55
USP39-204ENST00000409766 CABP4P57796 275 aa24.75■■□□□ 1.55
USP39-204ENST00000409766 AIMP1Q12904 312 aaKnown RBP24.75■■□□□ 1.55
USP39-204ENST00000409766 RHPN1Q8TCX5 695 aa24.74■■□□□ 1.55
USP39-204ENST00000409766 FMNL2Q96PY5 1086 aa24.74■■□□□ 1.55
USP39-204ENST00000409766 IL1RAPL2Q9NP60 686 aa24.74■■□□□ 1.55
USP39-204ENST00000409766 AOX1Q06278 1338 aa24.74■■□□□ 1.55
USP39-204ENST00000409766 ZCRB1Q8TBF4 217 aaKnown RBP24.74■■□□□ 1.55
USP39-204ENST00000409766 HDAC5Q9UQL6 1122 aa24.74■■□□□ 1.55
USP39-204ENST00000409766 UTYO14607 1347 aa24.74■■□□□ 1.55
USP39-204ENST00000409766 PCDH11XQ9BZA7 1347 aa24.74■■□□□ 1.55
USP39-204ENST00000409766 PCDH11YQ9BZA8 1340 aa24.74■■□□□ 1.55
USP39-204ENST00000409766 KIF1BPQ96EK5 621 aa24.73■■□□□ 1.55
USP39-204ENST00000409766 USP16Q9Y5T5 823 aa24.73■■□□□ 1.55
USP39-204ENST00000409766 GLI3P10071 1580 aa24.73■■□□□ 1.55
USP39-204ENST00000409766 MYL6BP14649 208 aa24.73■■□□□ 1.55
USP39-204ENST00000409766 LRP10Q7Z4F1 713 aa24.73■■□□□ 1.55
USP39-204ENST00000409766 CARD10Q9BWT7 1032 aa24.73■■□□□ 1.55
USP39-204ENST00000409766 HSP90AB4PQ58FF6 505 aa24.72■■□□□ 1.55
USP39-204ENST00000409766 RBM42Q9BTD8 480 aaKnown RBP24.72■■□□□ 1.55
USP39-204ENST00000409766 GRM8O00222 908 aa24.71■■□□□ 1.55
USP39-204ENST00000409766 ERC2O15083 957 aa24.71■■□□□ 1.55
USP39-204ENST00000409766 REC8O95072 547 aa24.71■■□□□ 1.55
USP39-204ENST00000409766 LARP1Q6PKG0 1096 aaKnown RBP24.71■■□□□ 1.55
USP39-204ENST00000409766 CD2BP2O95400 341 aaKnown RBP24.71■■□□□ 1.55
USP39-204ENST00000409766 IGKV5-2P06315 115 aa24.71■■□□□ 1.55
USP39-204ENST00000409766 RIC3Q7Z5B4 369 aa24.71■■□□□ 1.55
USP39-204ENST00000409766 XAGE3Q8WTP9 111 aa24.71■■□□□ 1.55
USP39-204ENST00000409766 COPS6Q7L5N1 327 aa24.7■■□□□ 1.54
USP39-204ENST00000409766 LTBP4Q8N2S1 1624 aa24.7■■□□□ 1.54
USP39-204ENST00000409766 CHMP5Q9NZZ3 219 aa24.69■■□□□ 1.54
USP39-204ENST00000409766 LAMB4A4D0S4 1761 aa24.69■■□□□ 1.54
USP39-204ENST00000409766 SHANK3Q9BYB0 1731 aa24.69■■□□□ 1.54
USP39-204ENST00000409766 IL2RBP14784 551 aa24.69■■□□□ 1.54
USP39-204ENST00000409766 NUTM1Q86Y26 1132 aa24.69■■□□□ 1.54
USP39-204ENST00000409766 DDIT3P35638 169 aa24.68■■□□□ 1.54
USP39-204ENST00000409766 NKX1-1Q15270 411 aaPredicted RBP24.68■■□□□ 1.54
USP39-204ENST00000409766 KAZALD1Q96I82 304 aa24.68■■□□□ 1.54
USP39-204ENST00000409766 RABEP1Q15276 862 aa24.68■■□□□ 1.54
USP39-204ENST00000409766 ERVV-2B6SEH9 535 aa24.67■■□□□ 1.54
USP39-204ENST00000409766 NEXNQ0ZGT2 675 aa24.67■■□□□ 1.54
USP39-204ENST00000409766 SUCLG2Q96I99 432 aa24.67■■□□□ 1.54
USP39-204ENST00000409766 METTL22Q9BUU2 404 aaPredicted RBP24.67■■□□□ 1.54
USP39-204ENST00000409766 UBR2Q8IWV8 1755 aa24.67■■□□□ 1.54
USP39-204ENST00000409766 NEURL1BA8MQ27 555 aa24.66■■□□□ 1.54
USP39-204ENST00000409766 TRIM6-TRIM34B2RNG4 842 aa24.66■■□□□ 1.54
USP39-204ENST00000409766 K7ELQ4 463 aaPredicted RBP24.66■■□□□ 1.54
USP39-204ENST00000409766 ANKRD13DQ6ZTN6 518 aa24.66■■□□□ 1.54
USP39-204ENST00000409766 UNC5CLQ8IV45 518 aa24.66■■□□□ 1.54
USP39-204ENST00000409766 PI4K2BQ8TCG2 481 aa24.66■■□□□ 1.54
USP39-204ENST00000409766 RILPL2Q969X0 211 aa24.66■■□□□ 1.54
USP39-204ENST00000409766 ESYT1Q9BSJ8 1104 aa24.66■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms