RNA–Protein interactions for RNA: ENST00000409754.5

LIMS2-206, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 1 (best) BASIC

Gene LIMS2, Length 1,620 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-206ENST00000409754 EIF4A1P60842 406 aaKnown RBP17.81■□□□□ 0.44
LIMS2-206ENST00000409754 INTS3Q68E01 1043 aaKnown RBP17.81■□□□□ 0.44
LIMS2-206ENST00000409754 CHMP4AQ9BY43 222 aa17.81■□□□□ 0.44
LIMS2-206ENST00000409754 SIPA1L3O60292 1781 aaPredicted RBP17.81■□□□□ 0.44
LIMS2-206ENST00000409754 RGPD3A6NKT7 1758 aaPredicted RBP17.8■□□□□ 0.44
LIMS2-206ENST00000409754 RGPD4Q7Z3J3 1758 aa17.8■□□□□ 0.44
LIMS2-206ENST00000409754 MRC1P22897 1456 aa17.8■□□□□ 0.44
LIMS2-206ENST00000409754 BTBD11A6QL63 1104 aa17.8■□□□□ 0.44
LIMS2-206ENST00000409754 SKAP1Q86WV1 359 aa17.8■□□□□ 0.44
LIMS2-206ENST00000409754 RREB1Q92766 1687 aa17.8■□□□□ 0.44
LIMS2-206ENST00000409754 IFNL2Q8IZJ0 200 aa17.79■□□□□ 0.44
LIMS2-206ENST00000409754 CACNA1FO60840 1977 aa17.78■□□□□ 0.44
LIMS2-206ENST00000409754 DEFB132Q7Z7B7 95 aa17.78■□□□□ 0.44
LIMS2-206ENST00000409754 LY75O60449 1722 aa17.78■□□□□ 0.44
LIMS2-206ENST00000409754 PAPPAQ13219 1627 aa17.77■□□□□ 0.44
LIMS2-206ENST00000409754 HSP90AB1P08238 724 aaKnown RBP17.76■□□□□ 0.43
LIMS2-206ENST00000409754 PRIM1P49642 420 aaKnown RBP17.76■□□□□ 0.43
LIMS2-206ENST00000409754 HDGFL1Q5TGJ6 251 aa17.76■□□□□ 0.43
LIMS2-206ENST00000409754 G2E3Q7L622 706 aa17.76■□□□□ 0.43
LIMS2-206ENST00000409754 BCL11BQ9C0K0 894 aaPredicted RBP17.76■□□□□ 0.43
LIMS2-206ENST00000409754 NUP188Q5SRE5 1749 aa17.76■□□□□ 0.43
LIMS2-206ENST00000409754 KCNQ3O43525 872 aa17.76■□□□□ 0.43
LIMS2-206ENST00000409754 PDE4AP27815 886 aa17.76■□□□□ 0.43
LIMS2-206ENST00000409754 HEG1Q9ULI3 1381 aa17.75■□□□□ 0.43
LIMS2-206ENST00000409754 RGS3P49796 1198 aa17.75■□□□□ 0.43
LIMS2-206ENST00000409754 FLIIQ13045 1269 aa17.75■□□□□ 0.43
LIMS2-206ENST00000409754 DCAF5Q96JK2 942 aa17.75■□□□□ 0.43
LIMS2-206ENST00000409754 BACH2Q9BYV9 841 aa17.75■□□□□ 0.43
LIMS2-206ENST00000409754 SMC5Q8IY18 1101 aa17.74■□□□□ 0.43
LIMS2-206ENST00000409754 SLC52A2Q9HAB3 445 aa17.74■□□□□ 0.43
LIMS2-206ENST00000409754 PDZRN3Q9UPQ7 1066 aa17.74■□□□□ 0.43
LIMS2-206ENST00000409754 CCT4P50991 539 aaKnown RBP17.73■□□□□ 0.43
LIMS2-206ENST00000409754 PIGBQ92521 554 aa17.72■□□□□ 0.43
LIMS2-206ENST00000409754 NECTIN2Q92692 538 aa17.72■□□□□ 0.43
LIMS2-206ENST00000409754 EN1Q05925 392 aaPredicted RBP17.72■□□□□ 0.43
LIMS2-206ENST00000409754 CCDC125Q86Z20 511 aa17.72■□□□□ 0.43
LIMS2-206ENST00000409754 PROM2Q8N271 834 aa17.72■□□□□ 0.43
LIMS2-206ENST00000409754 CAMKK2Q96RR4 588 aa17.72■□□□□ 0.43
LIMS2-206ENST00000409754 UBR2Q8IWV8 1755 aa17.71■□□□□ 0.43
LIMS2-206ENST00000409754 GIGYF1O75420 1035 aaPredicted RBP17.71■□□□□ 0.43
LIMS2-206ENST00000409754 APBA3O96018 575 aa17.71■□□□□ 0.43
LIMS2-206ENST00000409754 FKBP5Q13451 457 aaPredicted RBP17.71■□□□□ 0.43
LIMS2-206ENST00000409754 PXDNLA1KZ92 1463 aa17.71■□□□□ 0.43
LIMS2-206ENST00000409754 EIF2S2P20042 333 aaKnown RBP17.7■□□□□ 0.42
LIMS2-206ENST00000409754 SYTL4Q96C24 671 aaPredicted RBP17.7■□□□□ 0.42
LIMS2-206ENST00000409754 C1orf115Q9H7X2 142 aa17.7■□□□□ 0.42
LIMS2-206ENST00000409754 F6X3S4 739 aa17.69■□□□□ 0.42
LIMS2-206ENST00000409754 EZH2Q15910 746 aaKnown RBP17.69■□□□□ 0.42
LIMS2-206ENST00000409754 FAM161AQ3B820 660 aa17.69■□□□□ 0.42
LIMS2-206ENST00000409754 ZNF790Q6PG37 636 aa17.69■□□□□ 0.42
LIMS2-206ENST00000409754 GCC1Q96CN9 775 aa17.69■□□□□ 0.42
LIMS2-206ENST00000409754 TAF1LQ8IZX4 1826 aa17.69■□□□□ 0.42
LIMS2-206ENST00000409754 NFATC2IPQ8NCF5 419 aa17.69■□□□□ 0.42
LIMS2-206ENST00000409754 KCPQ6ZWJ8 1503 aa17.68■□□□□ 0.42
LIMS2-206ENST00000409754 ERVV-2B6SEH9 535 aa17.68■□□□□ 0.42
LIMS2-206ENST00000409754 SLC4A10Q6U841 1118 aa17.68■□□□□ 0.42
LIMS2-206ENST00000409754 SIRT2Q8IXJ6 389 aa17.68■□□□□ 0.42
LIMS2-206ENST00000409754 CHPF2Q9P2E5 772 aa17.68■□□□□ 0.42
LIMS2-206ENST00000409754 N4BP2Q86UW6 1770 aaPredicted RBP17.67■□□□□ 0.42
LIMS2-206ENST00000409754 PLSCR1O15162 318 aa17.67■□□□□ 0.42
LIMS2-206ENST00000409754 RPAP2Q8IXW5 612 aaPredicted RBP17.67■□□□□ 0.42
LIMS2-206ENST00000409754 DBF4Q9UBU7 674 aaPredicted RBP17.67■□□□□ 0.42
LIMS2-206ENST00000409754 ASAP1Q9ULH1 1129 aa17.67■□□□□ 0.42
LIMS2-206ENST00000409754 CICQ96RK0 1608 aaPredicted RBP17.67■□□□□ 0.42
LIMS2-206ENST00000409754 TJP1Q07157 1748 aa17.66■□□□□ 0.42
LIMS2-206ENST00000409754 ATP10DQ9P241 1426 aa17.66■□□□□ 0.42
LIMS2-206ENST00000409754 ANKRD44Q8N8A2 993 aa17.66■□□□□ 0.42
LIMS2-206ENST00000409754 MEIS3Q99687 375 aa17.66■□□□□ 0.42
LIMS2-206ENST00000409754 PHAXQ9H814 394 aaKnown RBP17.66■□□□□ 0.42
LIMS2-206ENST00000409754 PALLDQ8WX93 1383 aa17.66■□□□□ 0.42
LIMS2-206ENST00000409754 C5P01031 1676 aa17.65■□□□□ 0.42
LIMS2-206ENST00000409754 ZNF831Q5JPB2 1677 aa17.65■□□□□ 0.42
LIMS2-206ENST00000409754 BAG6P46379 1132 aa17.65■□□□□ 0.42
LIMS2-206ENST00000409754 CABP4P57796 275 aa17.65■□□□□ 0.42
LIMS2-206ENST00000409754 NUCB1Q02818 461 aa17.65■□□□□ 0.42
LIMS2-206ENST00000409754 C8orf34Q49A92 452 aa17.65■□□□□ 0.42
LIMS2-206ENST00000409754 ATG3Q9NT62 314 aa17.65■□□□□ 0.42
LIMS2-206ENST00000409754 LRRC4BQ9NT99 713 aa17.65■□□□□ 0.42
LIMS2-206ENST00000409754 TMOD3Q9NYL9 352 aa17.65■□□□□ 0.42
LIMS2-206ENST00000409754 TUBGCP6Q96RT7 1819 aa17.65■□□□□ 0.42
LIMS2-206ENST00000409754 COL5A3P25940 1745 aaPredicted RBP17.65■□□□□ 0.42
LIMS2-206ENST00000409754 KCNQ4P56696 695 aa17.65■□□□□ 0.42
LIMS2-206ENST00000409754 SLC39A6Q13433 755 aa17.65■□□□□ 0.42
LIMS2-206ENST00000409754 SLC4A9Q96Q91 983 aa17.65■□□□□ 0.42
LIMS2-206ENST00000409754 CEP85Q6P2H3 762 aa17.64■□□□□ 0.41
LIMS2-206ENST00000409754 TTC5Q8N0Z6 440 aa17.64■□□□□ 0.41
LIMS2-206ENST00000409754 GNAI3P08754 354 aa17.63■□□□□ 0.41
LIMS2-206ENST00000409754 SF3B2Q13435 895 aaKnown RBP17.63■□□□□ 0.41
LIMS2-206ENST00000409754 TXNRD1Q16881 649 aa17.63■□□□□ 0.41
LIMS2-206ENST00000409754 CHD1LQ86WJ1 897 aa17.62■□□□□ 0.41
LIMS2-206ENST00000409754 ANO8Q9HCE9 1232 aaPredicted RBP17.62■□□□□ 0.41
LIMS2-206ENST00000409754 HYPKQ9NX55 129 aa17.62■□□□□ 0.41
LIMS2-206ENST00000409754 PRAMEF22A3QJZ6 481 aa17.61■□□□□ 0.41
LIMS2-206ENST00000409754 ZNF496Q96IT1 587 aaPredicted RBP17.61■□□□□ 0.41
LIMS2-206ENST00000409754 FMNL2Q96PY5 1086 aa17.61■□□□□ 0.41
LIMS2-206ENST00000409754 DCTPP1Q9H773 170 aa17.61■□□□□ 0.41
LIMS2-206ENST00000409754 DDX21Q9NR30 783 aaKnown RBP eCLIP17.61■□□□□ 0.41
LIMS2-206ENST00000409754 GNAI2P04899 355 aa17.61■□□□□ 0.41
LIMS2-206ENST00000409754 SNRPA1P09661 255 aaKnown RBP17.61■□□□□ 0.41
LIMS2-206ENST00000409754 DNAAF4Q8WXU2 420 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms