RNA–Protein interactions for RNA: ENST00000409225.2

CHMP3-203, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-203ENST00000409225 SOS1Q07889 1333 aaPredicted RBP22.91■■□□□ 1.26
CHMP3-203ENST00000409225 NFIXQ14938 502 aa22.91■■□□□ 1.26
CHMP3-203ENST00000409225 AFDNP55196 1824 aaKnown RBP22.89■■□□□ 1.26
CHMP3-203ENST00000409225 SULT6B1Q6IMI4 303 aa22.89■■□□□ 1.25
CHMP3-203ENST00000409225 TIAM2Q8IVF5 1701 aa22.88■■□□□ 1.25
CHMP3-203ENST00000409225 TTLL6Q8N841 843 aa22.88■■□□□ 1.25
CHMP3-203ENST00000409225 SERPINB2P05120 415 aa22.87■■□□□ 1.25
CHMP3-203ENST00000409225 C2CD5Q86YS7 1000 aa22.87■■□□□ 1.25
CHMP3-203ENST00000409225 NARFQ9UHQ1 456 aa22.87■■□□□ 1.25
CHMP3-203ENST00000409225 COL15A1P39059 1388 aa22.87■■□□□ 1.25
CHMP3-203ENST00000409225 SCN11AQ9UI33 1791 aa22.86■■□□□ 1.25
CHMP3-203ENST00000409225 CYP19A1P11511 503 aaPredicted RBP22.86■■□□□ 1.25
CHMP3-203ENST00000409225 DLEC1Q9Y238 1755 aa22.86■■□□□ 1.25
CHMP3-203ENST00000409225 NRXN2Q9P2S2 1712 aa22.85■■□□□ 1.25
CHMP3-203ENST00000409225 NFKBIEO00221 500 aa22.85■■□□□ 1.25
CHMP3-203ENST00000409225 SLC39A6Q13433 755 aa22.85■■□□□ 1.25
CHMP3-203ENST00000409225 SLC52A2Q9HAB3 445 aa22.85■■□□□ 1.25
CHMP3-203ENST00000409225 BCL2L12Q9HB09 334 aa22.85■■□□□ 1.25
CHMP3-203ENST00000409225 ZBTB1Q9Y2K1 713 aa22.85■■□□□ 1.25
CHMP3-203ENST00000409225 CCDC88AQ3V6T2 1871 aa22.84■■□□□ 1.25
CHMP3-203ENST00000409225 POTECB2RU33 542 aa22.84■■□□□ 1.25
CHMP3-203ENST00000409225 LGR6Q9HBX8 967 aa22.84■■□□□ 1.25
CHMP3-203ENST00000409225 CARMIL3Q8ND23 1372 aa22.84■■□□□ 1.25
CHMP3-203ENST00000409225 H0YIN7 160 aa22.83■■□□□ 1.25
CHMP3-203ENST00000409225 AKAP4Q5JQC9 854 aa22.83■■□□□ 1.25
CHMP3-203ENST00000409225 MORC1Q86VD1 984 aa22.83■■□□□ 1.25
CHMP3-203ENST00000409225 PANK3Q9H999 370 aa22.83■■□□□ 1.25
CHMP3-203ENST00000409225 DPY19L2Q6NUT2 758 aa22.82■■□□□ 1.24
CHMP3-203ENST00000409225 BICDL1Q6ZP65 573 aa22.82■■□□□ 1.24
CHMP3-203ENST00000409225 ZNF219Q9P2Y4 722 aaPredicted RBP22.81■■□□□ 1.24
CHMP3-203ENST00000409225 IL13P35225 146 aa22.8■■□□□ 1.24
CHMP3-203ENST00000409225 RNMTO43148 476 aaKnown RBP22.79■■□□□ 1.24
CHMP3-203ENST00000409225 CANXP27824 592 aaKnown RBP22.79■■□□□ 1.24
CHMP3-203ENST00000409225 ZNF622Q969S3 477 aaKnown RBP eCLIP22.79■■□□□ 1.24
CHMP3-203ENST00000409225 MKRN1Q9UHC7 482 aaKnown RBP22.79■■□□□ 1.24
CHMP3-203ENST00000409225 MRC1P22897 1456 aa22.78■■□□□ 1.24
CHMP3-203ENST00000409225 C21orf2O43822 256 aa22.77■■□□□ 1.24
CHMP3-203ENST00000409225 ERFEQ4G0M1 354 aa22.77■■□□□ 1.24
CHMP3-203ENST00000409225 CHADLQ6NUI6 762 aa22.76■■□□□ 1.23
CHMP3-203ENST00000409225 CREBZFQ9NS37 354 aa22.76■■□□□ 1.23
CHMP3-203ENST00000409225 CCDC24Q8N4L8 307 aa22.75■■□□□ 1.23
CHMP3-203ENST00000409225 POTEIP0CG38 1075 aa22.74■■□□□ 1.23
CHMP3-203ENST00000409225 POTEJP0CG39 1038 aa22.74■■□□□ 1.23
CHMP3-203ENST00000409225 VSIG10Q8N0Z9 540 aa22.74■■□□□ 1.23
CHMP3-203ENST00000409225 ANKRD31Q8N7Z5 1873 aa22.73■■□□□ 1.23
CHMP3-203ENST00000409225 HMOX1P09601 288 aa22.73■■□□□ 1.23
CHMP3-203ENST00000409225 TBC1D9BQ66K14 1250 aa22.73■■□□□ 1.23
CHMP3-203ENST00000409225 A0A087WZG4 1122 aa22.72■■□□□ 1.23
CHMP3-203ENST00000409225 PDE6BP35913 854 aa22.72■■□□□ 1.23
CHMP3-203ENST00000409225 VIRMAQ69YN4 1812 aaKnown RBP22.72■■□□□ 1.23
CHMP3-203ENST00000409225 FER1L6Q2WGJ9 1857 aa22.71■■□□□ 1.23
CHMP3-203ENST00000409225 DICER1Q9UPY3 1922 aaKnown RBP22.71■■□□□ 1.23
CHMP3-203ENST00000409225 DDNO94850 711 aaPredicted RBP22.71■■□□□ 1.23
CHMP3-203ENST00000409225 EIF5P55010 431 aaKnown RBP22.71■■□□□ 1.23
CHMP3-203ENST00000409225 BRIP1Q9BX63 1249 aa22.71■■□□□ 1.23
CHMP3-203ENST00000409225 TAOK3Q9H2K8 898 aa22.71■■□□□ 1.23
CHMP3-203ENST00000409225 ZNF330Q9Y3S2 320 aaPredicted RBP22.71■■□□□ 1.23
CHMP3-203ENST00000409225 COL11A2P13942 1736 aaPredicted RBP22.71■■□□□ 1.23
CHMP3-203ENST00000409225 FOXN1O15353 648 aa22.7■■□□□ 1.22
CHMP3-203ENST00000409225 STARD3NLO95772 234 aa22.7■■□□□ 1.22
CHMP3-203ENST00000409225 MTHFSDQ2M296 383 aaKnown RBP22.7■■□□□ 1.22
CHMP3-203ENST00000409225 PRR5LQ6MZQ0 368 aa22.7■■□□□ 1.22
CHMP3-203ENST00000409225 PDZRN3Q9UPQ7 1066 aa22.7■■□□□ 1.22
CHMP3-203ENST00000409225 TTC5Q8N0Z6 440 aa22.69■■□□□ 1.22
CHMP3-203ENST00000409225 CNTNAP1P78357 1384 aa22.68■■□□□ 1.22
CHMP3-203ENST00000409225 LTBP3Q9NS15 1303 aa22.68■■□□□ 1.22
CHMP3-203ENST00000409225 HSPA5P11021 654 aaKnown RBP22.68■■□□□ 1.22
CHMP3-203ENST00000409225 TIMELESSQ9UNS1 1208 aa22.68■■□□□ 1.22
CHMP3-203ENST00000409225 TBC1D2BQ9UPU7 963 aa22.68■■□□□ 1.22
CHMP3-203ENST00000409225 KNSTRNQ9Y448 316 aa22.68■■□□□ 1.22
CHMP3-203ENST00000409225 UBR2Q8IWV8 1755 aa22.68■■□□□ 1.22
CHMP3-203ENST00000409225 SCN7AQ01118 1682 aa22.66■■□□□ 1.22
CHMP3-203ENST00000409225 NPHP1O15259 732 aa22.66■■□□□ 1.22
CHMP3-203ENST00000409225 EIF4G2P78344 907 aaKnown RBP eCLIP22.66■■□□□ 1.22
CHMP3-203ENST00000409225 CNKSR1Q969H4 720 aa22.65■■□□□ 1.22
CHMP3-203ENST00000409225 SLX4Q8IY92 1834 aa22.64■■□□□ 1.22
CHMP3-203ENST00000409225 PRPF40BQ6NWY9 871 aaKnown RBP22.64■■□□□ 1.21
CHMP3-203ENST00000409225 CNBD1Q8NA66 436 aa22.64■■□□□ 1.21
CHMP3-203ENST00000409225 AIDAQ96BJ3 306 aa22.64■■□□□ 1.21
CHMP3-203ENST00000409225 ZNF496Q96IT1 587 aaPredicted RBP22.64■■□□□ 1.21
CHMP3-203ENST00000409225 PRDM10Q9NQV6 1147 aa22.64■■□□□ 1.21
CHMP3-203ENST00000409225 PASKQ96RG2 1323 aa22.63■■□□□ 1.21
CHMP3-203ENST00000409225 CACNA1SQ13698 1873 aa22.63■■□□□ 1.21
CHMP3-203ENST00000409225 IQCA1LA6NCM1 817 aa22.63■■□□□ 1.21
CHMP3-203ENST00000409225 STYK1Q6J9G0 422 aa22.63■■□□□ 1.21
CHMP3-203ENST00000409225 LDHDQ86WU2 507 aa22.63■■□□□ 1.21
CHMP3-203ENST00000409225 SETDB2Q96T68 719 aa22.63■■□□□ 1.21
CHMP3-203ENST00000409225 CTCFP49711 727 aaPredicted RBP22.62■■□□□ 1.21
CHMP3-203ENST00000409225 VEGFBP49765 207 aa22.62■■□□□ 1.21
CHMP3-203ENST00000409225 ST5P78524 1137 aa22.62■■□□□ 1.21
CHMP3-203ENST00000409225 SOGA3Q5TF21 947 aa22.62■■□□□ 1.21
CHMP3-203ENST00000409225 HEG1Q9ULI3 1381 aa22.62■■□□□ 1.21
CHMP3-203ENST00000409225 SRGNP10124 158 aa22.61■■□□□ 1.21
CHMP3-203ENST00000409225 TAF1DQ9H5J8 278 aaPredicted RBP22.61■■□□□ 1.21
CHMP3-203ENST00000409225 TMEM88BA6NKF7 163 aa22.6■■□□□ 1.21
CHMP3-203ENST00000409225 IL6STP40189 918 aaPredicted RBP22.6■■□□□ 1.21
CHMP3-203ENST00000409225 EAPPQ56P03 285 aaPredicted RBP22.6■■□□□ 1.21
CHMP3-203ENST00000409225 ZNF790Q6PG37 636 aa22.6■■□□□ 1.21
CHMP3-203ENST00000409225 NPM2Q86SE8 214 aaKnown RBP22.6■■□□□ 1.21
CHMP3-203ENST00000409225 MASTLQ96GX5 879 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms