RNA–Protein interactions for RNA: ENST00000406134.5

MSH2-202, Transcript of mutS homolog 2, humanhuman

TSL 1 (best) BASIC

Gene MSH2, Length 3,628 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-202ENST00000406134 RBM33Q96EV2 1170 aaKnown RBP12.07□□□□□ -0.48
MSH2-202ENST00000406134 STK31Q9BXU1 1019 aa12.07□□□□□ -0.48
MSH2-202ENST00000406134 LTV1Q96GA3 475 aaPredicted RBP12.07□□□□□ -0.48
MSH2-202ENST00000406134 PPP1R9BQ96SB3 815 aa12.07□□□□□ -0.48
MSH2-202ENST00000406134 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.07□□□□□ -0.48
MSH2-202ENST00000406134 RPAP1Q9BWH6 1393 aaPredicted RBP12.07□□□□□ -0.48
MSH2-202ENST00000406134 MRC1P22897 1456 aa12.07□□□□□ -0.48
MSH2-202ENST00000406134 HSP90AA1P07900 732 aaKnown RBP12.06□□□□□ -0.48
MSH2-202ENST00000406134 ZSCAN23Q3MJ62 389 aa12.06□□□□□ -0.48
MSH2-202ENST00000406134 CWC22Q9HCG8 908 aaKnown RBP12.06□□□□□ -0.48
MSH2-202ENST00000406134 ARFGEF2Q9Y6D5 1785 aa12.06□□□□□ -0.48
MSH2-202ENST00000406134 NUCB2P80303 420 aa12.06□□□□□ -0.48
MSH2-202ENST00000406134 CHPF2Q9P2E5 772 aa12.06□□□□□ -0.48
MSH2-202ENST00000406134 USP42Q9H9J4 1324 aaKnown RBP12.06□□□□□ -0.48
MSH2-202ENST00000406134 PKD1L3Q7Z443 1732 aa12.06□□□□□ -0.48
MSH2-202ENST00000406134 IL1RAPL2Q9NP60 686 aa12.06□□□□□ -0.48
MSH2-202ENST00000406134 BRD1O95696 1058 aa12.05□□□□□ -0.48
MSH2-202ENST00000406134 PTMSP20962 102 aa12.05□□□□□ -0.48
MSH2-202ENST00000406134 HDGFL1Q5TGJ6 251 aa12.05□□□□□ -0.48
MSH2-202ENST00000406134 PPP1R42Q7Z4L9 355 aa12.05□□□□□ -0.48
MSH2-202ENST00000406134 LRRC59Q96AG4 307 aaKnown RBP12.05□□□□□ -0.48
MSH2-202ENST00000406134 PHF8Q9UPP1 1060 aa12.05□□□□□ -0.48
MSH2-202ENST00000406134 KIF1AQ12756 1690 aa12.05□□□□□ -0.48
MSH2-202ENST00000406134 ST18O60284 1047 aa12.05□□□□□ -0.48
MSH2-202ENST00000406134 TMEM63CQ9P1W3 806 aa12.05□□□□□ -0.48
MSH2-202ENST00000406134 RBM27Q9P2N5 1060 aaKnown RBP12.05□□□□□ -0.48
MSH2-202ENST00000406134 MST1RQ04912 1400 aa12.05□□□□□ -0.48
MSH2-202ENST00000406134 PLPPR3Q6T4P5 718 aa12.05□□□□□ -0.48
MSH2-202ENST00000406134 NUTM1Q86Y26 1132 aa12.05□□□□□ -0.48
MSH2-202ENST00000406134 PRAMEF22A3QJZ6 481 aa12.04□□□□□ -0.48
MSH2-202ENST00000406134 HSPA4P34932 840 aa12.04□□□□□ -0.48
MSH2-202ENST00000406134 CASC1Q6TDU7 716 aa12.04□□□□□ -0.48
MSH2-202ENST00000406134 LAMA4Q16363 1823 aa12.04□□□□□ -0.48
MSH2-202ENST00000406134 LAMB4A4D0S4 1761 aa12.04□□□□□ -0.48
MSH2-202ENST00000406134 ANXA1P04083 346 aa12.04□□□□□ -0.48
MSH2-202ENST00000406134 NEK4P51957 841 aa12.04□□□□□ -0.48
MSH2-202ENST00000406134 ANAPC15P60006 121 aa12.04□□□□□ -0.48
MSH2-202ENST00000406134 PROSER3Q2NL68 480 aa12.04□□□□□ -0.48
MSH2-202ENST00000406134 RBSNQ9H1K0 784 aa12.04□□□□□ -0.48
MSH2-202ENST00000406134 DDX49Q9Y6V7 483 aaKnown RBP12.04□□□□□ -0.48
MSH2-202ENST00000406134 TTC14Q96N46 770 aa12.04□□□□□ -0.48
MSH2-202ENST00000406134 LSG1Q9H089 658 aaKnown RBP12.03□□□□□ -0.48
MSH2-202ENST00000406134 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.03□□□□□ -0.48
MSH2-202ENST00000406134 NUP188Q5SRE5 1749 aa12.03□□□□□ -0.48
MSH2-202ENST00000406134 HOXB7P09629 217 aa12.03□□□□□ -0.48
MSH2-202ENST00000406134 UBTFL1P0CB47 393 aaPredicted RBP12.03□□□□□ -0.48
MSH2-202ENST00000406134 RHPN1Q8TCX5 695 aa12.03□□□□□ -0.48
MSH2-202ENST00000406134 KAZALD1Q96I82 304 aa12.03□□□□□ -0.48
MSH2-202ENST00000406134 TJP1Q07157 1748 aa12.03□□□□□ -0.48
MSH2-202ENST00000406134 CAVIN1Q6NZI2 390 aaKnown RBP12.03□□□□□ -0.48
MSH2-202ENST00000406134 MYH15Q9Y2K3 1946 aa12.02□□□□□ -0.48
MSH2-202ENST00000406134 ESPNB1AK53 854 aa12.02□□□□□ -0.48
MSH2-202ENST00000406134 MAP4K4O95819 1239 aaPredicted RBP12.02□□□□□ -0.48
MSH2-202ENST00000406134 MTX1Q13505 466 aa12.02□□□□□ -0.48
MSH2-202ENST00000406134 COL9A3Q14050 684 aaPredicted RBP12.02□□□□□ -0.48
MSH2-202ENST00000406134 SRCIN1Q9C0H9 1055 aa12.02□□□□□ -0.48
MSH2-202ENST00000406134 PI4KAP2A4QPH2 592 aa12.02□□□□□ -0.49
MSH2-202ENST00000406134 PRIM1P49642 420 aaKnown RBP12.02□□□□□ -0.49
MSH2-202ENST00000406134 PI4KAP1Q8N8J0 262 aa12.02□□□□□ -0.49
MSH2-202ENST00000406134 RAD50Q92878 1312 aa12.02□□□□□ -0.49
MSH2-202ENST00000406134 RILPL2Q969X0 211 aa12.02□□□□□ -0.49
MSH2-202ENST00000406134 PDLIM2Q96JY6 352 aa12.02□□□□□ -0.49
MSH2-202ENST00000406134 PARP4Q9UKK3 1724 aaKnown RBP12.02□□□□□ -0.49
MSH2-202ENST00000406134 AXIN2Q9Y2T1 843 aa12.02□□□□□ -0.49
MSH2-202ENST00000406134 SGSM2O43147 1006 aa12.01□□□□□ -0.49
MSH2-202ENST00000406134 RASEFQ8IZ41 740 aa12.01□□□□□ -0.49
MSH2-202ENST00000406134 PRPF40AO75400 957 aaKnown RBP12.01□□□□□ -0.49
MSH2-202ENST00000406134 UBR2Q8IWV8 1755 aa12.01□□□□□ -0.49
MSH2-202ENST00000406134 KDM6AO15550 1401 aaPredicted RBP12.01□□□□□ -0.49
MSH2-202ENST00000406134 SHANK3Q9BYB0 1731 aa12.01□□□□□ -0.49
MSH2-202ENST00000406134 INTS4Q96HW7 963 aaKnown RBP12.01□□□□□ -0.49
MSH2-202ENST00000406134 UPF3BQ9BZI7 483 aaKnown RBP12.01□□□□□ -0.49
MSH2-202ENST00000406134 PDIA6Q15084 440 aa12□□□□□ -0.49
MSH2-202ENST00000406134 AKAP4Q5JQC9 854 aa12□□□□□ -0.49
MSH2-202ENST00000406134 ARHGEF25Q86VW2 580 aa12□□□□□ -0.49
MSH2-202ENST00000406134 ANO2Q9NQ90 1003 aa12□□□□□ -0.49
MSH2-202ENST00000406134 RAB11FIP3O75154 756 aa12□□□□□ -0.49
MSH2-202ENST00000406134 NASPP49321 788 aaPredicted RBP12□□□□□ -0.49
MSH2-202ENST00000406134 ST3GAL1Q11201 340 aa12□□□□□ -0.49
MSH2-202ENST00000406134 DNAAF4Q8WXU2 420 aa12□□□□□ -0.49
MSH2-202ENST00000406134 SNX14Q9Y5W7 946 aa12□□□□□ -0.49
MSH2-202ENST00000406134 ABCC6O95255 1503 aa12□□□□□ -0.49
MSH2-202ENST00000406134 TRIM6-TRIM34B2RNG4 842 aa12□□□□□ -0.49
MSH2-202ENST00000406134 EPB41L2O43491 1005 aaKnown RBP12□□□□□ -0.49
MSH2-202ENST00000406134 MPRIPQ6WCQ1 1025 aa12□□□□□ -0.49
MSH2-202ENST00000406134 XIRP1Q702N8 1843 aaKnown RBP12□□□□□ -0.49
MSH2-202ENST00000406134 RNMTO43148 476 aaKnown RBP11.99□□□□□ -0.49
MSH2-202ENST00000406134 SRGAP3O43295 1099 aa11.99□□□□□ -0.49
MSH2-202ENST00000406134 EIF2S2P20042 333 aaKnown RBP11.99□□□□□ -0.49
MSH2-202ENST00000406134 UTYO14607 1347 aa11.99□□□□□ -0.49
MSH2-202ENST00000406134 PAPPAQ13219 1627 aa11.99□□□□□ -0.49
MSH2-202ENST00000406134 GIGYF1O75420 1035 aaPredicted RBP11.99□□□□□ -0.49
MSH2-202ENST00000406134 SURF6O75683 361 aaKnown RBP11.99□□□□□ -0.49
MSH2-202ENST00000406134 CCDC173Q0VFZ6 552 aa11.99□□□□□ -0.49
MSH2-202ENST00000406134 ORAI2Q96SN7 254 aa11.99□□□□□ -0.49
MSH2-202ENST00000406134 LARGE1O95461 756 aa11.98□□□□□ -0.49
MSH2-202ENST00000406134 RUFY3Q7L099 469 aa11.98□□□□□ -0.49
MSH2-202ENST00000406134 KCNB2Q92953 911 aa11.98□□□□□ -0.49
MSH2-202ENST00000406134 BTBD11A6QL63 1104 aa11.98□□□□□ -0.49
MSH2-202ENST00000406134 FOXD4L5Q5VV16 416 aaPredicted RBP11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms