RNA–Protein interactions for RNA: ENST00000400540.5

LINC00544-201, long intergenic non-protein coding RNA 544, humanhuman

TSL 5 BASIC

Gene LINC00544, Length 1,031 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00544-201ENST00000400540 USPL1Q5W0Q7 1092 aa16.25■□□□□ 0.19
LINC00544-201ENST00000400540 PCNTO95613 3336 aa16.24■□□□□ 0.19
LINC00544-201ENST00000400540 SOS1Q07889 1333 aaPredicted RBP16.24■□□□□ 0.19
LINC00544-201ENST00000400540 KIF7Q2M1P5 1343 aa16.24■□□□□ 0.19
LINC00544-201ENST00000400540 PIM2Q9P1W9 311 aa16.24■□□□□ 0.19
LINC00544-201ENST00000400540 COL11A2P13942 1736 aaPredicted RBP16.24■□□□□ 0.19
LINC00544-201ENST00000400540 COL15A1P39059 1388 aa16.24■□□□□ 0.19
LINC00544-201ENST00000400540 RNMTO43148 476 aaKnown RBP16.23■□□□□ 0.19
LINC00544-201ENST00000400540 TOMM70O94826 608 aa16.23■□□□□ 0.19
LINC00544-201ENST00000400540 TM4SF1P30408 202 aa16.23■□□□□ 0.19
LINC00544-201ENST00000400540 COL3A1P02461 1466 aaPredicted RBP16.22■□□□□ 0.19
LINC00544-201ENST00000400540 CYP19A1P11511 503 aaPredicted RBP16.22■□□□□ 0.19
LINC00544-201ENST00000400540 DALRD3Q5D0E6 543 aaKnown RBP16.22■□□□□ 0.19
LINC00544-201ENST00000400540 CCER1Q8TC90 406 aaPredicted RBP16.22■□□□□ 0.19
LINC00544-201ENST00000400540 ZBTB1Q9Y2K1 713 aa16.22■□□□□ 0.19
LINC00544-201ENST00000400540 ZPR1O75312 459 aa16.21■□□□□ 0.19
LINC00544-201ENST00000400540 MTHFSDQ2M296 383 aaKnown RBP16.21■□□□□ 0.19
LINC00544-201ENST00000400540 APLP1P51693 650 aa16.2■□□□□ 0.18
LINC00544-201ENST00000400540 RNF181Q9P0P0 153 aa16.2■□□□□ 0.18
LINC00544-201ENST00000400540 BCORQ6W2J9 1755 aa16.2■□□□□ 0.18
LINC00544-201ENST00000400540 DICER1Q9UPY3 1922 aaKnown RBP16.19■□□□□ 0.18
LINC00544-201ENST00000400540 CARMIL3Q8ND23 1372 aa16.19■□□□□ 0.18
LINC00544-201ENST00000400540 RASSF7Q02833 373 aa16.19■□□□□ 0.18
LINC00544-201ENST00000400540 NFIXQ14938 502 aa16.19■□□□□ 0.18
LINC00544-201ENST00000400540 CC2D1BQ5T0F9 858 aaKnown RBP16.19■□□□□ 0.18
LINC00544-201ENST00000400540 BCL2L12Q9HB09 334 aa16.19■□□□□ 0.18
LINC00544-201ENST00000400540 NARFQ9UHQ1 456 aa16.19■□□□□ 0.18
LINC00544-201ENST00000400540 DNAJC5GQ8N7S2 189 aa16.18■□□□□ 0.18
LINC00544-201ENST00000400540 FER1L6Q2WGJ9 1857 aa16.17■□□□□ 0.18
LINC00544-201ENST00000400540 PER1O15534 1290 aaPredicted RBP16.17■□□□□ 0.18
LINC00544-201ENST00000400540 DIAPH1O60610 1272 aaKnown RBP16.17■□□□□ 0.18
LINC00544-201ENST00000400540 HTRA3P83110 453 aa16.17■□□□□ 0.18
LINC00544-201ENST00000400540 RBM46Q8TBY0 533 aaKnown RBP16.17■□□□□ 0.18
LINC00544-201ENST00000400540 ARFGEF2Q9Y6D5 1785 aa16.16■□□□□ 0.18
LINC00544-201ENST00000400540 SERPINB2P05120 415 aa16.15■□□□□ 0.18
LINC00544-201ENST00000400540 CANXP27824 592 aaKnown RBP16.15■□□□□ 0.18
LINC00544-201ENST00000400540 PRELPP51888 382 aa16.15■□□□□ 0.18
LINC00544-201ENST00000400540 CNGB1Q14028 1251 aaPredicted RBP16.15■□□□□ 0.18
LINC00544-201ENST00000400540 C16orf71Q8IYS4 520 aaPredicted RBP16.15■□□□□ 0.18
LINC00544-201ENST00000400540 RRAGCQ9HB90 399 aa16.15■□□□□ 0.18
LINC00544-201ENST00000400540 KDM2BQ8NHM5 1336 aa16.15■□□□□ 0.18
LINC00544-201ENST00000400540 VSIG10Q8N0Z9 540 aa16.14■□□□□ 0.17
LINC00544-201ENST00000400540 BICDL1Q6ZP65 573 aa16.13■□□□□ 0.17
LINC00544-201ENST00000400540 C2CD5Q86YS7 1000 aa16.12■□□□□ 0.17
LINC00544-201ENST00000400540 TTC5Q8N0Z6 440 aa16.12■□□□□ 0.17
LINC00544-201ENST00000400540 ZNF496Q96IT1 587 aaPredicted RBP16.12■□□□□ 0.17
LINC00544-201ENST00000400540 SLX4Q8IY92 1834 aa16.12■□□□□ 0.17
LINC00544-201ENST00000400540 HEG1Q9ULI3 1381 aa16.12■□□□□ 0.17
LINC00544-201ENST00000400540 U2SURPO15042 1029 aaKnown RBP16.11■□□□□ 0.17
LINC00544-201ENST00000400540 EIF5P55010 431 aaKnown RBP16.11■□□□□ 0.17
LINC00544-201ENST00000400540 IL17REQ8NFR9 667 aa16.11■□□□□ 0.17
LINC00544-201ENST00000400540 FSTL1Q12841 308 aa16.1■□□□□ 0.17
LINC00544-201ENST00000400540 TBC1D9BQ66K14 1250 aa16.1■□□□□ 0.17
LINC00544-201ENST00000400540 CCDC24Q8N4L8 307 aa16.1■□□□□ 0.17
LINC00544-201ENST00000400540 TTLL6Q8N841 843 aa16.1■□□□□ 0.17
LINC00544-201ENST00000400540 ZNF330Q9Y3S2 320 aaPredicted RBP16.1■□□□□ 0.17
LINC00544-201ENST00000400540 NFKBIEO00221 500 aa16.09■□□□□ 0.17
LINC00544-201ENST00000400540 STARD3NLO95772 234 aa16.09■□□□□ 0.17
LINC00544-201ENST00000400540 LMNB1P20700 586 aa16.09■□□□□ 0.17
LINC00544-201ENST00000400540 TEFQ10587 303 aa16.09■□□□□ 0.17
LINC00544-201ENST00000400540 ZNF790Q6PG37 636 aa16.09■□□□□ 0.17
LINC00544-201ENST00000400540 DLG5Q8TDM6 1919 aa16.09■□□□□ 0.17
LINC00544-201ENST00000400540 GNAT3A8MTJ3 354 aa16.08■□□□□ 0.16
LINC00544-201ENST00000400540 H0YIN7 160 aa16.08■□□□□ 0.16
LINC00544-201ENST00000400540 KLRG1Q96E93 195 aa16.08■□□□□ 0.16
LINC00544-201ENST00000400540 TBC1D2BQ9UPU7 963 aa16.08■□□□□ 0.16
LINC00544-201ENST00000400540 ZC3H4Q9UPT8 1303 aaKnown RBP16.08■□□□□ 0.16
LINC00544-201ENST00000400540 NPC1L1Q9UHC9 1359 aa16.08■□□□□ 0.16
LINC00544-201ENST00000400540 LAMB4A4D0S4 1761 aa16.08■□□□□ 0.16
LINC00544-201ENST00000400540 KCNQ3O43525 872 aa16.07■□□□□ 0.16
LINC00544-201ENST00000400540 GAS2L2Q8NHY3 880 aa16.07■□□□□ 0.16
LINC00544-201ENST00000400540 ZNF219Q9P2Y4 722 aaPredicted RBP16.07■□□□□ 0.16
LINC00544-201ENST00000400540 CEMIPQ8WUJ3 1361 aa16.07■□□□□ 0.16
LINC00544-201ENST00000400540 A0A087WZG4 1122 aa16.06■□□□□ 0.16
LINC00544-201ENST00000400540 GLTPD2A6NH11 291 aa16.06■□□□□ 0.16
LINC00544-201ENST00000400540 A1BGP04217 495 aa16.06■□□□□ 0.16
LINC00544-201ENST00000400540 PRR5LQ6MZQ0 368 aa16.06■□□□□ 0.16
LINC00544-201ENST00000400540 ZNF622Q969S3 477 aaKnown RBP eCLIP16.06■□□□□ 0.16
LINC00544-201ENST00000400540 PHACTR3Q96KR7 559 aa16.06■□□□□ 0.16
LINC00544-201ENST00000400540 SMC1BQ8NDV3 1235 aa16.05■□□□□ 0.16
LINC00544-201ENST00000400540 C21orf2O43822 256 aa16.04■□□□□ 0.16
LINC00544-201ENST00000400540 IL6STP40189 918 aaPredicted RBP16.04■□□□□ 0.16
LINC00544-201ENST00000400540 PIP4K2AP48426 406 aaPredicted RBP16.04■□□□□ 0.16
LINC00544-201ENST00000400540 JMYQ8N9B5 988 aa16.04■□□□□ 0.16
LINC00544-201ENST00000400540 FMNL2Q96PY5 1086 aa16.04■□□□□ 0.16
LINC00544-201ENST00000400540 PRAMEF22A3QJZ6 481 aa16.03■□□□□ 0.16
LINC00544-201ENST00000400540 POTECB2RU33 542 aa16.03■□□□□ 0.16
LINC00544-201ENST00000400540 CAMTA2O94983 1202 aa16.03■□□□□ 0.16
LINC00544-201ENST00000400540 VEGFAP15692 232 aaPredicted RBP16.03■□□□□ 0.16
LINC00544-201ENST00000400540 PRKAR2BP31323 418 aa16.03■□□□□ 0.16
LINC00544-201ENST00000400540 BRIP1Q9BX63 1249 aa16.03■□□□□ 0.16
LINC00544-201ENST00000400540 TEX13AQ9BXU3 409 aaPredicted RBP16.03■□□□□ 0.16
LINC00544-201ENST00000400540 RSPH6AQ9H0K4 717 aa16.03■□□□□ 0.16
LINC00544-201ENST00000400540 BTBD11A6QL63 1104 aa16.02■□□□□ 0.16
LINC00544-201ENST00000400540 PDE6BP35913 854 aa16.02■□□□□ 0.16
LINC00544-201ENST00000400540 KDM3BQ7LBC6 1761 aa16.02■□□□□ 0.15
LINC00544-201ENST00000400540 NUP98P52948 1817 aa16.01■□□□□ 0.15
LINC00544-201ENST00000400540 CNBD1Q8NA66 436 aa16.01■□□□□ 0.15
LINC00544-201ENST00000400540 USP16Q9Y5T5 823 aa16.01■□□□□ 0.15
LINC00544-201ENST00000400540 COL13A1Q5TAT6 717 aaPredicted RBP16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms