RNA–Protein interactions for RNA: ENST00000394925.5

TRAF4-203, Transcript of TNF receptor associated factor 4, humanhuman

TSL 2

Gene TRAF4, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-203ENST00000394925 MRC1P22897 1456 aa28.68■■■□□ 2.18
TRAF4-203ENST00000394925 KDM2BQ8NHM5 1336 aa28.68■■■□□ 2.18
TRAF4-203ENST00000394925 NARFQ9UHQ1 456 aa28.67■■■□□ 2.18
TRAF4-203ENST00000394925 SBF1O95248 1867 aa28.67■■■□□ 2.18
TRAF4-203ENST00000394925 COL15A1P39059 1388 aa28.66■■■□□ 2.18
TRAF4-203ENST00000394925 NFIXQ14938 502 aa28.66■■■□□ 2.18
TRAF4-203ENST00000394925 MTHFSDQ2M296 383 aaKnown RBP28.66■■■□□ 2.18
TRAF4-203ENST00000394925 CCER1Q8TC90 406 aaPredicted RBP28.66■■■□□ 2.18
TRAF4-203ENST00000394925 ZBTB1Q9Y2K1 713 aa28.66■■■□□ 2.18
TRAF4-203ENST00000394925 AFDNP55196 1824 aaKnown RBP28.66■■■□□ 2.18
TRAF4-203ENST00000394925 RRAGCQ9HB90 399 aa28.64■■■□□ 2.18
TRAF4-203ENST00000394925 KIF7Q2M1P5 1343 aa28.63■■■□□ 2.17
TRAF4-203ENST00000394925 WDR90Q96KV7 1748 aa28.63■■■□□ 2.17
TRAF4-203ENST00000394925 DIAPH1O60610 1272 aaKnown RBP28.62■■■□□ 2.17
TRAF4-203ENST00000394925 RASSF7Q02833 373 aa28.62■■■□□ 2.17
TRAF4-203ENST00000394925 BCL2L12Q9HB09 334 aa28.62■■■□□ 2.17
TRAF4-203ENST00000394925 SERPINB2P05120 415 aa28.61■■■□□ 2.17
TRAF4-203ENST00000394925 HTRA3P83110 453 aa28.61■■■□□ 2.17
TRAF4-203ENST00000394925 FSTL1Q12841 308 aa28.61■■■□□ 2.17
TRAF4-203ENST00000394925 VSIG10Q8N0Z9 540 aa28.61■■■□□ 2.17
TRAF4-203ENST00000394925 CANXP27824 592 aaKnown RBP28.6■■■□□ 2.17
TRAF4-203ENST00000394925 NRXN2Q9P2S2 1712 aa28.6■■■□□ 2.17
TRAF4-203ENST00000394925 CC2D1BQ5T0F9 858 aaKnown RBP28.59■■■□□ 2.17
TRAF4-203ENST00000394925 TNRC6CQ9HCJ0 1690 aaKnown RBP28.58■■■□□ 2.16
TRAF4-203ENST00000394925 UBR2Q8IWV8 1755 aa28.57■■■□□ 2.16
TRAF4-203ENST00000394925 PER1O15534 1290 aaPredicted RBP28.56■■■□□ 2.16
TRAF4-203ENST00000394925 BICDL1Q6ZP65 573 aa28.56■■■□□ 2.16
TRAF4-203ENST00000394925 C2CD5Q86YS7 1000 aa28.56■■■□□ 2.16
TRAF4-203ENST00000394925 TTC5Q8N0Z6 440 aa28.56■■■□□ 2.16
TRAF4-203ENST00000394925 TTLL6Q8N841 843 aa28.56■■■□□ 2.16
TRAF4-203ENST00000394925 DLEC1Q9Y238 1755 aa28.55■■■□□ 2.16
TRAF4-203ENST00000394925 STARD3NLO95772 234 aa28.55■■■□□ 2.16
TRAF4-203ENST00000394925 LMNB1P20700 586 aa28.54■■■□□ 2.16
TRAF4-203ENST00000394925 KLRG1Q96E93 195 aa28.54■■■□□ 2.16
TRAF4-203ENST00000394925 CARMIL3Q8ND23 1372 aa28.53■■■□□ 2.16
TRAF4-203ENST00000394925 ZC3H4Q9UPT8 1303 aaKnown RBP28.53■■■□□ 2.16
TRAF4-203ENST00000394925 H0YIN7 160 aa28.53■■■□□ 2.16
TRAF4-203ENST00000394925 PRELPP51888 382 aa28.53■■■□□ 2.16
TRAF4-203ENST00000394925 EIF5P55010 431 aaKnown RBP28.53■■■□□ 2.16
TRAF4-203ENST00000394925 CNGB1Q14028 1251 aaPredicted RBP28.52■■■□□ 2.16
TRAF4-203ENST00000394925 CCDC88AQ3V6T2 1871 aa28.51■■■□□ 2.15
TRAF4-203ENST00000394925 A0A087WZG4 1122 aa28.51■■■□□ 2.15
TRAF4-203ENST00000394925 U2SURPO15042 1029 aaKnown RBP28.51■■■□□ 2.15
TRAF4-203ENST00000394925 SMC1BQ8NDV3 1235 aa28.51■■■□□ 2.15
TRAF4-203ENST00000394925 ZNF496Q96IT1 587 aaPredicted RBP28.51■■■□□ 2.15
TRAF4-203ENST00000394925 TEFQ10587 303 aa28.5■■■□□ 2.15
TRAF4-203ENST00000394925 GLTPD2A6NH11 291 aa28.49■■■□□ 2.15
TRAF4-203ENST00000394925 TBC1D9BQ66K14 1250 aa28.49■■■□□ 2.15
TRAF4-203ENST00000394925 IL17REQ8NFR9 667 aa28.49■■■□□ 2.15
TRAF4-203ENST00000394925 ZNF330Q9Y3S2 320 aaPredicted RBP28.49■■■□□ 2.15
TRAF4-203ENST00000394925 GNAT3A8MTJ3 354 aa28.48■■■□□ 2.15
TRAF4-203ENST00000394925 ZNF790Q6PG37 636 aa28.48■■■□□ 2.15
TRAF4-203ENST00000394925 HEG1Q9ULI3 1381 aa28.48■■■□□ 2.15
TRAF4-203ENST00000394925 NFKBIEO00221 500 aa28.47■■■□□ 2.15
TRAF4-203ENST00000394925 VEGFAP15692 232 aaPredicted RBP28.47■■■□□ 2.15
TRAF4-203ENST00000394925 GAS2L2Q8NHY3 880 aa28.47■■■□□ 2.15
TRAF4-203ENST00000394925 ZNF622Q969S3 477 aaKnown RBP eCLIP28.47■■■□□ 2.15
TRAF4-203ENST00000394925 TBC1D2BQ9UPU7 963 aa28.47■■■□□ 2.15
TRAF4-203ENST00000394925 COL3A1P02461 1466 aaPredicted RBP28.46■■■□□ 2.15
TRAF4-203ENST00000394925 JMYQ8N9B5 988 aa28.46■■■□□ 2.15
TRAF4-203ENST00000394925 TEX13AQ9BXU3 409 aaPredicted RBP28.46■■■□□ 2.15
TRAF4-203ENST00000394925 ANKRD31Q8N7Z5 1873 aa28.45■■■□□ 2.15
TRAF4-203ENST00000394925 CCDC24Q8N4L8 307 aa28.45■■■□□ 2.14
TRAF4-203ENST00000394925 ZNF219Q9P2Y4 722 aaPredicted RBP28.45■■■□□ 2.14
TRAF4-203ENST00000394925 TIAM2Q8IVF5 1701 aa28.45■■■□□ 2.14
TRAF4-203ENST00000394925 PCNTO95613 3336 aa28.44■■■□□ 2.14
TRAF4-203ENST00000394925 SIPA1L3O60292 1781 aaPredicted RBP28.43■■■□□ 2.14
TRAF4-203ENST00000394925 BRIP1Q9BX63 1249 aa28.43■■■□□ 2.14
TRAF4-203ENST00000394925 SCN7AQ01118 1682 aa28.42■■■□□ 2.14
TRAF4-203ENST00000394925 PDE6BP35913 854 aa28.42■■■□□ 2.14
TRAF4-203ENST00000394925 IL6STP40189 918 aaPredicted RBP28.42■■■□□ 2.14
TRAF4-203ENST00000394925 PRR5LQ6MZQ0 368 aa28.42■■■□□ 2.14
TRAF4-203ENST00000394925 FMNL2Q96PY5 1086 aa28.42■■■□□ 2.14
TRAF4-203ENST00000394925 C21orf2O43822 256 aa28.41■■■□□ 2.14
TRAF4-203ENST00000394925 A1BGP04217 495 aa28.41■■■□□ 2.14
TRAF4-203ENST00000394925 PDZRN3Q9UPQ7 1066 aa28.41■■■□□ 2.14
TRAF4-203ENST00000394925 NPM2Q86SE8 214 aaKnown RBP28.4■■■□□ 2.14
TRAF4-203ENST00000394925 NPC1L1Q9UHC9 1359 aa28.39■■■□□ 2.14
TRAF4-203ENST00000394925 COL11A2P13942 1736 aaPredicted RBP28.39■■■□□ 2.14
TRAF4-203ENST00000394925 KCNQ3O43525 872 aa28.38■■■□□ 2.13
TRAF4-203ENST00000394925 COL13A1Q5TAT6 717 aaPredicted RBP28.38■■■□□ 2.13
TRAF4-203ENST00000394925 DPY19L2Q6NUT2 758 aa28.38■■■□□ 2.13
TRAF4-203ENST00000394925 SETDB2Q96T68 719 aa28.38■■■□□ 2.13
TRAF4-203ENST00000394925 POTECB2RU33 542 aa28.37■■■□□ 2.13
TRAF4-203ENST00000394925 NPHP1O15259 732 aa28.37■■■□□ 2.13
TRAF4-203ENST00000394925 PHACTR3Q96KR7 559 aa28.37■■■□□ 2.13
TRAF4-203ENST00000394925 BTBD11A6QL63 1104 aa28.36■■■□□ 2.13
TRAF4-203ENST00000394925 CAMTA2O94983 1202 aa28.36■■■□□ 2.13
TRAF4-203ENST00000394925 ERFEQ4G0M1 354 aa28.36■■■□□ 2.13
TRAF4-203ENST00000394925 CNBD1Q8NA66 436 aa28.36■■■□□ 2.13
TRAF4-203ENST00000394925 FER1L6Q2WGJ9 1857 aa28.36■■■□□ 2.13
TRAF4-203ENST00000394925 CEMIPQ8WUJ3 1361 aa28.36■■■□□ 2.13
TRAF4-203ENST00000394925 DICER1Q9UPY3 1922 aaKnown RBP28.35■■■□□ 2.13
TRAF4-203ENST00000394925 PRKAR2BP31323 418 aa28.34■■■□□ 2.13
TRAF4-203ENST00000394925 DZIP3Q86Y13 1208 aaKnown RBP28.33■■■□□ 2.13
TRAF4-203ENST00000394925 CACNA1SQ13698 1873 aa28.33■■■□□ 2.13
TRAF4-203ENST00000394925 PIP4K2AP48426 406 aaPredicted RBP28.32■■■□□ 2.12
TRAF4-203ENST00000394925 ST5P78524 1137 aa28.32■■■□□ 2.12
TRAF4-203ENST00000394925 CNKSR1Q969H4 720 aa28.32■■■□□ 2.12
TRAF4-203ENST00000394925 RSPH6AQ9H0K4 717 aa28.32■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms