RNA–Protein interactions for RNA: ENST00000394803.9

UBE2D3-208, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene UBE2D3, Length 2,227 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-208ENST00000394803 RBM27Q9P2N5 1060 aaKnown RBP12.13□□□□□ -0.47
UBE2D3-208ENST00000394803 NGDNQ8NEJ9 315 aaKnown RBP12.12□□□□□ -0.47
UBE2D3-208ENST00000394803 KIF1BPQ96EK5 621 aa12.12□□□□□ -0.47
UBE2D3-208ENST00000394803 EYA1Q99502 592 aa12.11□□□□□ -0.47
UBE2D3-208ENST00000394803 LRRFIP2Q9Y608 721 aaKnown RBP12.11□□□□□ -0.47
UBE2D3-208ENST00000394803 RAD50Q92878 1312 aa12.11□□□□□ -0.47
UBE2D3-208ENST00000394803 CCDC183Q5T5S1 534 aa12.11□□□□□ -0.47
UBE2D3-208ENST00000394803 MIS18AQ9NYP9 233 aa12.11□□□□□ -0.47
UBE2D3-208ENST00000394803 CEP170BQ9Y4F5 1589 aaPredicted RBP12.11□□□□□ -0.47
UBE2D3-208ENST00000394803 TTC41PQ6P2S7 1318 aa12.1□□□□□ -0.47
UBE2D3-208ENST00000394803 PNMA6EA0A0J9YXQ4 647 aa12.1□□□□□ -0.47
UBE2D3-208ENST00000394803 DYNC1I1O14576 645 aa12.1□□□□□ -0.47
UBE2D3-208ENST00000394803 KIAA2012Q0VF49 1180 aa12.1□□□□□ -0.47
UBE2D3-208ENST00000394803 GPATCH3Q96I76 525 aa12.1□□□□□ -0.47
UBE2D3-208ENST00000394803 PIK3C2AO00443 1686 aa12.1□□□□□ -0.47
UBE2D3-208ENST00000394803 FOXO3O43524 673 aa12.1□□□□□ -0.47
UBE2D3-208ENST00000394803 SASS6Q6UVJ0 657 aa12.1□□□□□ -0.47
UBE2D3-208ENST00000394803 ZSCAN31Q96LW9 406 aaPredicted RBP12.1□□□□□ -0.47
UBE2D3-208ENST00000394803 SGSM2O43147 1006 aa12.09□□□□□ -0.47
UBE2D3-208ENST00000394803 TPM3P06753 285 aa12.09□□□□□ -0.47
UBE2D3-208ENST00000394803 POLA2Q14181 598 aa12.09□□□□□ -0.47
UBE2D3-208ENST00000394803 HDGFL1Q5TGJ6 251 aa12.09□□□□□ -0.47
UBE2D3-208ENST00000394803 PALD1Q9ULE6 856 aa12.09□□□□□ -0.47
UBE2D3-208ENST00000394803 R3HCC1Q9Y3T6 440 aaKnown RBP12.09□□□□□ -0.47
UBE2D3-208ENST00000394803 USP42Q9H9J4 1324 aaKnown RBP12.09□□□□□ -0.47
UBE2D3-208ENST00000394803 UBE2HP62256 183 aa12.09□□□□□ -0.47
UBE2D3-208ENST00000394803 USP44Q9H0E7 712 aa12.09□□□□□ -0.47
UBE2D3-208ENST00000394803 LIMCH1Q9UPQ0 1083 aa12.09□□□□□ -0.47
UBE2D3-208ENST00000394803 TBX22Q9Y458 520 aa12.09□□□□□ -0.47
UBE2D3-208ENST00000394803 SLIT1O75093 1534 aa12.08□□□□□ -0.48
UBE2D3-208ENST00000394803 SURF6O75683 361 aaKnown RBP12.08□□□□□ -0.48
UBE2D3-208ENST00000394803 GLRX3O76003 335 aaKnown RBP12.08□□□□□ -0.48
UBE2D3-208ENST00000394803 ZSCAN22P10073 491 aaPredicted RBP12.08□□□□□ -0.48
UBE2D3-208ENST00000394803 ERC1Q8IUD2 1116 aa12.08□□□□□ -0.48
UBE2D3-208ENST00000394803 RHPN1Q8TCX5 695 aa12.08□□□□□ -0.48
UBE2D3-208ENST00000394803 SH2B1Q9NRF2 756 aaPredicted RBP12.08□□□□□ -0.48
UBE2D3-208ENST00000394803 CRYBG1Q9Y4K1 1723 aa12.08□□□□□ -0.48
UBE2D3-208ENST00000394803 HIP1O00291 1037 aa12.07□□□□□ -0.48
UBE2D3-208ENST00000394803 SOX12O15370 315 aa12.07□□□□□ -0.48
UBE2D3-208ENST00000394803 FOXD4L5Q5VV16 416 aaPredicted RBP12.07□□□□□ -0.48
UBE2D3-208ENST00000394803 FOXD4L4Q8WXT5 416 aaPredicted RBP12.07□□□□□ -0.48
UBE2D3-208ENST00000394803 SMC3Q9UQE7 1217 aa12.07□□□□□ -0.48
UBE2D3-208ENST00000394803 ADGRL3Q9HAR2 1447 aa12.07□□□□□ -0.48
UBE2D3-208ENST00000394803 HOXC9P31274 260 aa12.07□□□□□ -0.48
UBE2D3-208ENST00000394803 HMGN5P82970 282 aaKnown RBP12.07□□□□□ -0.48
UBE2D3-208ENST00000394803 USP48Q86UV5 1035 aa12.07□□□□□ -0.48
UBE2D3-208ENST00000394803 PPP1R42Q7Z4L9 355 aa12.06□□□□□ -0.48
UBE2D3-208ENST00000394803 UPF3BQ9BZI7 483 aaKnown RBP12.06□□□□□ -0.48
UBE2D3-208ENST00000394803 TM6SF1Q9BZW5 370 aa12.06□□□□□ -0.48
UBE2D3-208ENST00000394803 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.06□□□□□ -0.48
UBE2D3-208ENST00000394803 RPAP1Q9BWH6 1393 aaPredicted RBP12.06□□□□□ -0.48
UBE2D3-208ENST00000394803 ARHGAP23Q9P227 1491 aa12.06□□□□□ -0.48
UBE2D3-208ENST00000394803 UQCRHLA0A096LP55 91 aa12.06□□□□□ -0.48
UBE2D3-208ENST00000394803 STX6O43752 255 aa12.06□□□□□ -0.48
UBE2D3-208ENST00000394803 UQCRHP07919 91 aa12.06□□□□□ -0.48
UBE2D3-208ENST00000394803 NLRP6P59044 892 aa12.06□□□□□ -0.48
UBE2D3-208ENST00000394803 TSHZ3Q63HK5 1081 aa12.06□□□□□ -0.48
UBE2D3-208ENST00000394803 PI4K2BQ8TCG2 481 aa12.06□□□□□ -0.48
UBE2D3-208ENST00000394803 PRIMPOLQ96LW4 560 aa12.06□□□□□ -0.48
UBE2D3-208ENST00000394803 DIAPH3Q9NSV4 1193 aa12.06□□□□□ -0.48
UBE2D3-208ENST00000394803 NSFL1CQ9UNZ2 370 aaKnown RBP12.06□□□□□ -0.48
UBE2D3-208ENST00000394803 AMOTL2Q9Y2J4 779 aa12.06□□□□□ -0.48
UBE2D3-208ENST00000394803 NWD1Q149M9 1564 aa12.05□□□□□ -0.48
UBE2D3-208ENST00000394803 XPCQ01831 940 aaPredicted RBP12.05□□□□□ -0.48
UBE2D3-208ENST00000394803 NOL8Q76FK4 1167 aaKnown RBP12.05□□□□□ -0.48
UBE2D3-208ENST00000394803 TTC14Q96N46 770 aa12.05□□□□□ -0.48
UBE2D3-208ENST00000394803 SNX14Q9Y5W7 946 aa12.05□□□□□ -0.48
UBE2D3-208ENST00000394803 SRGAP3O43295 1099 aa12.05□□□□□ -0.48
UBE2D3-208ENST00000394803 VPS53Q5VIR6 699 aa12.05□□□□□ -0.48
UBE2D3-208ENST00000394803 CLASRPQ8N2M8 674 aaKnown RBP12.05□□□□□ -0.48
UBE2D3-208ENST00000394803 RNF214Q8ND24 703 aa12.05□□□□□ -0.48
UBE2D3-208ENST00000394803 LSG1Q9H089 658 aaKnown RBP12.05□□□□□ -0.48
UBE2D3-208ENST00000394803 MED1Q15648 1581 aaPredicted RBP12.04□□□□□ -0.48
UBE2D3-208ENST00000394803 CHD2O14647 1828 aaKnown RBP12.04□□□□□ -0.48
UBE2D3-208ENST00000394803 CEMIPQ8WUJ3 1361 aa12.04□□□□□ -0.48
UBE2D3-208ENST00000394803 KDM3BQ7LBC6 1761 aa12.04□□□□□ -0.48
UBE2D3-208ENST00000394803 NUTM2FA1L443 756 aa12.04□□□□□ -0.48
UBE2D3-208ENST00000394803 GOLGA6L6A8MZA4 724 aa12.04□□□□□ -0.48
UBE2D3-208ENST00000394803 F13A1P00488 732 aa12.04□□□□□ -0.48
UBE2D3-208ENST00000394803 CEBPAP49715 358 aaPredicted RBP12.04□□□□□ -0.48
UBE2D3-208ENST00000394803 OS9Q13438 667 aaPredicted RBP12.04□□□□□ -0.48
UBE2D3-208ENST00000394803 MTX1Q13505 466 aa12.04□□□□□ -0.48
UBE2D3-208ENST00000394803 IL17REQ8NFR9 667 aa12.04□□□□□ -0.48
UBE2D3-208ENST00000394803 DNAAF4Q8WXU2 420 aa12.04□□□□□ -0.48
UBE2D3-208ENST00000394803 IL1RAPL2Q9NP60 686 aa12.04□□□□□ -0.48
UBE2D3-208ENST00000394803 ZKSCAN1P17029 563 aaPredicted RBP12.03□□□□□ -0.48
UBE2D3-208ENST00000394803 NUTM1Q86Y26 1132 aa12.03□□□□□ -0.48
UBE2D3-208ENST00000394803 UNC5CLQ8IV45 518 aa12.03□□□□□ -0.48
UBE2D3-208ENST00000394803 CYP46A1Q9Y6A2 500 aa12.03□□□□□ -0.48
UBE2D3-208ENST00000394803 OVOS2A0A0G2JMS6 1433 aa12.03□□□□□ -0.48
UBE2D3-208ENST00000394803 NCAPD2Q15021 1401 aa12.03□□□□□ -0.48
UBE2D3-208ENST00000394803 ALDH1L1O75891 902 aa12.03□□□□□ -0.48
UBE2D3-208ENST00000394803 PDCP20941 246 aa12.03□□□□□ -0.48
UBE2D3-208ENST00000394803 LTKP29376 864 aa12.03□□□□□ -0.48
UBE2D3-208ENST00000394803 AK2P54819 239 aa12.03□□□□□ -0.48
UBE2D3-208ENST00000394803 VSIG10Q8N0Z9 540 aa12.03□□□□□ -0.48
UBE2D3-208ENST00000394803 FER1L4A9Z1Z3 1794 aa12.02□□□□□ -0.48
UBE2D3-208ENST00000394803 RGPD8O14715 1765 aaPredicted RBP12.02□□□□□ -0.48
UBE2D3-208ENST00000394803 PSMA5P28066 241 aa12.02□□□□□ -0.48
UBE2D3-208ENST00000394803 ANKRD1Q15327 319 aa12.02□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms