RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 CPDO75976 1380 aa18.65■□□□□ 0.58
GPC3-202ENST00000394299 RBM42Q9BTD8 480 aaKnown RBP18.65■□□□□ 0.58
GPC3-202ENST00000394299 LRRCC1Q9C099 1032 aa18.65■□□□□ 0.58
GPC3-202ENST00000394299 USP16Q9Y5T5 823 aa18.65■□□□□ 0.58
GPC3-202ENST00000394299 OVOS2A0A0G2JMS6 1433 aa18.65■□□□□ 0.58
GPC3-202ENST00000394299 STRN4Q9NRL3 753 aa18.64■□□□□ 0.58
GPC3-202ENST00000394299 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.64■□□□□ 0.587e-10■■□□□ 11.6
GPC3-202ENST00000394299 FRAT2O75474 233 aaPredicted RBP18.64■□□□□ 0.57
GPC3-202ENST00000394299 PXDNLA1KZ92 1463 aa18.64■□□□□ 0.57
GPC3-202ENST00000394299 SRGAP3O43295 1099 aa18.63■□□□□ 0.57
GPC3-202ENST00000394299 KSR2Q6VAB6 950 aa18.63■□□□□ 0.57
GPC3-202ENST00000394299 SSH3Q8TE77 659 aa18.63■□□□□ 0.57
GPC3-202ENST00000394299 SURF6O75683 361 aaKnown RBP18.63■□□□□ 0.57
GPC3-202ENST00000394299 DCAF5Q96JK2 942 aa18.63■□□□□ 0.57
GPC3-202ENST00000394299 IBTKQ9P2D0 1353 aaPredicted RBP18.63■□□□□ 0.57
GPC3-202ENST00000394299 CRYBG1Q9Y4K1 1723 aa18.63■□□□□ 0.57
GPC3-202ENST00000394299 ANTXR1Q9H6X2 564 aa18.62■□□□□ 0.57
GPC3-202ENST00000394299 DDX21Q9NR30 783 aaKnown RBP eCLIP18.62■□□□□ 0.57
GPC3-202ENST00000394299 DEKP35659 375 aaKnown RBP18.62■□□□□ 0.57
GPC3-202ENST00000394299 CHMP4AQ9BY43 222 aa18.62■□□□□ 0.57
GPC3-202ENST00000394299 SALL3Q9BXA9 1300 aa18.61■□□□□ 0.57
GPC3-202ENST00000394299 CABP4P57796 275 aa18.61■□□□□ 0.57
GPC3-202ENST00000394299 HYPKQ9NX55 129 aa18.61■□□□□ 0.57
GPC3-202ENST00000394299 USP35Q9P2H5 1018 aa18.61■□□□□ 0.57
GPC3-202ENST00000394299 SIPA1L3O60292 1781 aaPredicted RBP18.61■□□□□ 0.57
GPC3-202ENST00000394299 WDR17Q8IZU2 1322 aa18.61■□□□□ 0.57
GPC3-202ENST00000394299 CD2BP2O95400 341 aaKnown RBP18.61■□□□□ 0.57
GPC3-202ENST00000394299 LARP1Q6PKG0 1096 aaKnown RBP18.61■□□□□ 0.57
GPC3-202ENST00000394299 NUTM1Q86Y26 1132 aa18.61■□□□□ 0.57
GPC3-202ENST00000394299 POLA2Q14181 598 aa18.6■□□□□ 0.57
GPC3-202ENST00000394299 C9orf78Q9NZ63 289 aaPredicted RBP18.6■□□□□ 0.57
GPC3-202ENST00000394299 ADAMTS7Q9UKP4 1686 aa18.6■□□□□ 0.57
GPC3-202ENST00000394299 DDX54Q8TDD1 881 aaKnown RBP18.6■□□□□ 0.57
GPC3-202ENST00000394299 OSBPL3Q9H4L5 887 aa18.6■□□□□ 0.57
GPC3-202ENST00000394299 MX1P20591 662 aa18.59■□□□□ 0.57
GPC3-202ENST00000394299 COPS6Q7L5N1 327 aa18.59■□□□□ 0.57
GPC3-202ENST00000394299 TTC5Q8N0Z6 440 aa18.59■□□□□ 0.57
GPC3-202ENST00000394299 XAGE3Q8WTP9 111 aa18.59■□□□□ 0.57
GPC3-202ENST00000394299 ZCRB1Q8TBF4 217 aaKnown RBP18.59■□□□□ 0.57
GPC3-202ENST00000394299 RIC3Q7Z5B4 369 aa18.58■□□□□ 0.56
GPC3-202ENST00000394299 JARID2Q92833 1246 aaPredicted RBP18.58■□□□□ 0.56
GPC3-202ENST00000394299 SCN11AQ9UI33 1791 aa18.58■□□□□ 0.56
GPC3-202ENST00000394299 UNC5CLQ8IV45 518 aa18.57■□□□□ 0.56
GPC3-202ENST00000394299 IGKV5-2P06315 115 aa18.57■□□□□ 0.56
GPC3-202ENST00000394299 EVA1CP58658 441 aa18.57■□□□□ 0.56
GPC3-202ENST00000394299 USP26Q9BXU7 913 aa18.57■□□□□ 0.56
GPC3-202ENST00000394299 PA2G4Q9UQ80 394 aaKnown RBP18.57■□□□□ 0.56
GPC3-202ENST00000394299 SNRPA1P09661 255 aaKnown RBP18.56■□□□□ 0.56
GPC3-202ENST00000394299 HSCBQ8IWL3 235 aa18.56■□□□□ 0.56
GPC3-202ENST00000394299 RHPN1Q8TCX5 695 aa18.56■□□□□ 0.56
GPC3-202ENST00000394299 RILPL2Q969X0 211 aa18.56■□□□□ 0.56
GPC3-202ENST00000394299 MAP4K4O95819 1239 aaPredicted RBP18.56■□□□□ 0.56
GPC3-202ENST00000394299 KAZALD1Q96I82 304 aa18.56■□□□□ 0.56
GPC3-202ENST00000394299 COL5A2P05997 1499 aaPredicted RBP18.56■□□□□ 0.56
GPC3-202ENST00000394299 ALDH1L1O75891 902 aa18.55■□□□□ 0.56
GPC3-202ENST00000394299 SUCLG2Q96I99 432 aa18.55■□□□□ 0.56
GPC3-202ENST00000394299 FMNL2Q96PY5 1086 aa18.55■□□□□ 0.56
GPC3-202ENST00000394299 TRIM6-TRIM34B2RNG4 842 aa18.55■□□□□ 0.56
GPC3-202ENST00000394299 LRP10Q7Z4F1 713 aa18.55■□□□□ 0.56
GPC3-202ENST00000394299 LINS1Q8NG48 757 aa18.55■□□□□ 0.56
GPC3-202ENST00000394299 N4BP2Q86UW6 1770 aaPredicted RBP18.54■□□□□ 0.56
GPC3-202ENST00000394299 DDX58O95786 925 aaKnown RBP18.54■□□□□ 0.56
GPC3-202ENST00000394299 HSP90AB1P08238 724 aaKnown RBP18.54■□□□□ 0.56
GPC3-202ENST00000394299 MYD88Q99836 296 aa18.54■□□□□ 0.56
GPC3-202ENST00000394299 C5P01031 1676 aa18.54■□□□□ 0.56
GPC3-202ENST00000394299 IL2RBP14784 551 aa18.54■□□□□ 0.56
GPC3-202ENST00000394299 FOXD4L1Q9NU39 408 aa18.54■□□□□ 0.56
GPC3-202ENST00000394299 GRM8O00222 908 aa18.53■□□□□ 0.56
GPC3-202ENST00000394299 PTCD1O75127 700 aaKnown RBP18.53■□□□□ 0.56
GPC3-202ENST00000394299 CARD10Q9BWT7 1032 aa18.53■□□□□ 0.56
GPC3-202ENST00000394299 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.53■□□□□ 0.56
GPC3-202ENST00000394299 ANKRD13DQ6ZTN6 518 aa18.52■□□□□ 0.56
GPC3-202ENST00000394299 SNX21Q969T3 373 aa18.52■□□□□ 0.56
GPC3-202ENST00000394299 BICC1Q9H694 974 aaKnown RBP18.52■□□□□ 0.56
GPC3-202ENST00000394299 STAP2Q9UGK3 403 aa18.52■□□□□ 0.56
GPC3-202ENST00000394299 RAB11FIP3O75154 756 aa18.52■□□□□ 0.55
GPC3-202ENST00000394299 OS9Q13438 667 aaPredicted RBP18.52■□□□□ 0.55
GPC3-202ENST00000394299 PCDH11XQ9BZA7 1347 aa18.51■□□□□ 0.55
GPC3-202ENST00000394299 PCDH11YQ9BZA8 1340 aa18.51■□□□□ 0.55
GPC3-202ENST00000394299 NEURL1BA8MQ27 555 aa18.51■□□□□ 0.55
GPC3-202ENST00000394299 ATP5J2-PTCD1G3V325 749 aa18.51■□□□□ 0.55
GPC3-202ENST00000394299 CASC1Q6TDU7 716 aa18.51■□□□□ 0.55
GPC3-202ENST00000394299 KLHDC4Q8TBB5 520 aa18.51■□□□□ 0.55
GPC3-202ENST00000394299 KIF1BPQ96EK5 621 aa18.51■□□□□ 0.55
GPC3-202ENST00000394299 BTG4Q9NY30 223 aa18.51■□□□□ 0.55
GPC3-202ENST00000394299 ABCC6O95255 1503 aa18.51■□□□□ 0.55
GPC3-202ENST00000394299 EPHA10Q5JZY3 1008 aa18.5■□□□□ 0.55
GPC3-202ENST00000394299 NBPF26B4DH59 902 aa18.5■□□□□ 0.55
GPC3-202ENST00000394299 NBPF14Q5TI25 921 aa18.5■□□□□ 0.55
GPC3-202ENST00000394299 NBPF10Q6P3W6 841 aaKnown RBP18.5■□□□□ 0.55
GPC3-202ENST00000394299 NBPF15Q8N660 670 aa18.5■□□□□ 0.55
GPC3-202ENST00000394299 PKD1L3Q7Z443 1732 aa18.5■□□□□ 0.55
GPC3-202ENST00000394299 ERC2O15083 957 aa18.49■□□□□ 0.55
GPC3-202ENST00000394299 MTX1Q13505 466 aa18.49■□□□□ 0.55
GPC3-202ENST00000394299 METTL22Q9BUU2 404 aaPredicted RBP18.49■□□□□ 0.55
GPC3-202ENST00000394299 IL25Q9H293 177 aa18.49■□□□□ 0.55
GPC3-202ENST00000394299 A1BGP04217 495 aa18.49■□□□□ 0.55
GPC3-202ENST00000394299 GCKRQ14397 625 aa18.49■□□□□ 0.55
GPC3-202ENST00000394299 MRC1P22897 1456 aa18.49■□□□□ 0.55
GPC3-202ENST00000394299 CHMLP26374 656 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms