RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 MTERF4Q7Z6M4 381 aaKnown RBP12.08□□□□□ -0.48
COL17A1-203ENST00000393211 USP44Q9H0E7 712 aa12.08□□□□□ -0.48
COL17A1-203ENST00000393211 LRRFIP2Q9Y608 721 aaKnown RBP12.08□□□□□ -0.48
COL17A1-203ENST00000393211 PIK3C2AO00443 1686 aa12.08□□□□□ -0.48
COL17A1-203ENST00000393211 PDIA4P13667 645 aaKnown RBP12.08□□□□□ -0.48
COL17A1-203ENST00000393211 NSFL1CQ9UNZ2 370 aaKnown RBP12.08□□□□□ -0.48
COL17A1-203ENST00000393211 ATP6V1DQ9Y5K8 247 aa12.08□□□□□ -0.48
COL17A1-203ENST00000393211 NWD1Q149M9 1564 aa12.07□□□□□ -0.48
COL17A1-203ENST00000393211 CRYBG1Q9Y4K1 1723 aa12.07□□□□□ -0.48
COL17A1-203ENST00000393211 RAD50Q92878 1312 aa12.07□□□□□ -0.48
COL17A1-203ENST00000393211 USP42Q9H9J4 1324 aaKnown RBP12.07□□□□□ -0.48
COL17A1-203ENST00000393211 SGSM2O43147 1006 aa12.07□□□□□ -0.48
COL17A1-203ENST00000393211 KIF1BPQ96EK5 621 aa12.07□□□□□ -0.48
COL17A1-203ENST00000393211 TBX22Q9Y458 520 aa12.07□□□□□ -0.48
COL17A1-203ENST00000393211 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.07□□□□□ -0.48
COL17A1-203ENST00000393211 SLIT1O75093 1534 aa12.06□□□□□ -0.48
COL17A1-203ENST00000393211 CNTROBQ8N137 903 aa12.06□□□□□ -0.48
COL17A1-203ENST00000393211 ARHGAP23Q9P227 1491 aa12.06□□□□□ -0.48
COL17A1-203ENST00000393211 TTC41PQ6P2S7 1318 aa12.06□□□□□ -0.48
COL17A1-203ENST00000393211 RPAP1Q9BWH6 1393 aaPredicted RBP12.06□□□□□ -0.48
COL17A1-203ENST00000393211 DYNC1I1O14576 645 aa12.05□□□□□ -0.48
COL17A1-203ENST00000393211 CCDC183Q5T5S1 534 aa12.05□□□□□ -0.48
COL17A1-203ENST00000393211 NGDNQ8NEJ9 315 aaKnown RBP12.05□□□□□ -0.48
COL17A1-203ENST00000393211 PI4K2BQ8TCG2 481 aa12.05□□□□□ -0.48
COL17A1-203ENST00000393211 RHPN1Q8TCX5 695 aa12.05□□□□□ -0.48
COL17A1-203ENST00000393211 TTC14Q96N46 770 aa12.05□□□□□ -0.48
COL17A1-203ENST00000393211 EID1Q9Y6B2 187 aa12.05□□□□□ -0.48
COL17A1-203ENST00000393211 HOXC9P31274 260 aa12.04□□□□□ -0.48
COL17A1-203ENST00000393211 TSHZ3Q63HK5 1081 aa12.04□□□□□ -0.48
COL17A1-203ENST00000393211 SASS6Q6UVJ0 657 aa12.04□□□□□ -0.48
COL17A1-203ENST00000393211 USP48Q86UV5 1035 aa12.04□□□□□ -0.48
COL17A1-203ENST00000393211 UNC5CLQ8IV45 518 aa12.04□□□□□ -0.48
COL17A1-203ENST00000393211 IL17REQ8NFR9 667 aa12.04□□□□□ -0.48
COL17A1-203ENST00000393211 RUFY2Q8WXA3 655 aa12.04□□□□□ -0.48
COL17A1-203ENST00000393211 LIMCH1Q9UPQ0 1083 aa12.04□□□□□ -0.48
COL17A1-203ENST00000393211 HDAC5Q9UQL6 1122 aa12.04□□□□□ -0.48
COL17A1-203ENST00000393211 MED1Q15648 1581 aaPredicted RBP12.04□□□□□ -0.48
COL17A1-203ENST00000393211 CEMIPQ8WUJ3 1361 aa12.04□□□□□ -0.48
COL17A1-203ENST00000393211 MARF1Q9Y4F3 1742 aaKnown RBP12.04□□□□□ -0.48
COL17A1-203ENST00000393211 ZSCAN22P10073 491 aaPredicted RBP12.04□□□□□ -0.48
COL17A1-203ENST00000393211 LTKP29376 864 aa12.04□□□□□ -0.48
COL17A1-203ENST00000393211 UBE2HP62256 183 aa12.04□□□□□ -0.48
COL17A1-203ENST00000393211 HDGFL1Q5TGJ6 251 aa12.04□□□□□ -0.48
COL17A1-203ENST00000393211 PPP1R42Q7Z4L9 355 aa12.04□□□□□ -0.48
COL17A1-203ENST00000393211 ZSCAN31Q96LW9 406 aaPredicted RBP12.04□□□□□ -0.48
COL17A1-203ENST00000393211 TM6SF1Q9BZW5 370 aa12.04□□□□□ -0.48
COL17A1-203ENST00000393211 LSG1Q9H089 658 aaKnown RBP12.04□□□□□ -0.48
COL17A1-203ENST00000393211 AMOTL2Q9Y2J4 779 aa12.04□□□□□ -0.48
COL17A1-203ENST00000393211 R3HCC1Q9Y3T6 440 aaKnown RBP12.04□□□□□ -0.48
COL17A1-203ENST00000393211 SNX14Q9Y5W7 946 aa12.04□□□□□ -0.48
COL17A1-203ENST00000393211 SURF6O75683 361 aaKnown RBP12.03□□□□□ -0.48
COL17A1-203ENST00000393211 KIAA2012Q0VF49 1180 aa12.03□□□□□ -0.48
COL17A1-203ENST00000393211 MTX1Q13505 466 aa12.03□□□□□ -0.48
COL17A1-203ENST00000393211 FOXD4L5Q5VV16 416 aaPredicted RBP12.03□□□□□ -0.48
COL17A1-203ENST00000393211 FOXD4L4Q8WXT5 416 aaPredicted RBP12.03□□□□□ -0.48
COL17A1-203ENST00000393211 KCNB2Q92953 911 aa12.03□□□□□ -0.48
COL17A1-203ENST00000393211 UPF3BQ9BZI7 483 aaKnown RBP12.03□□□□□ -0.48
COL17A1-203ENST00000393211 RGPD8O14715 1765 aaPredicted RBP12.02□□□□□ -0.48
COL17A1-203ENST00000393211 KDM3BQ7LBC6 1761 aa12.02□□□□□ -0.48
COL17A1-203ENST00000393211 GLRX3O76003 335 aaKnown RBP12.02□□□□□ -0.49
COL17A1-203ENST00000393211 PTMAP06454 111 aaKnown RBP12.02□□□□□ -0.49
COL17A1-203ENST00000393211 XPCQ01831 940 aaPredicted RBP12.02□□□□□ -0.49
COL17A1-203ENST00000393211 SH2B1Q9NRF2 756 aaPredicted RBP12.02□□□□□ -0.49
COL17A1-203ENST00000393211 ADGRL3Q9HAR2 1447 aa12.02□□□□□ -0.49
COL17A1-203ENST00000393211 SOX12O15370 315 aa12.01□□□□□ -0.49
COL17A1-203ENST00000393211 STX6O43752 255 aa12.01□□□□□ -0.49
COL17A1-203ENST00000393211 NLRP6P59044 892 aa12.01□□□□□ -0.49
COL17A1-203ENST00000393211 CHAMP1Q96JM3 812 aa12.01□□□□□ -0.49
COL17A1-203ENST00000393211 UQCRHLA0A096LP55 91 aa12□□□□□ -0.49
COL17A1-203ENST00000393211 NUTM2FA1L443 756 aa12□□□□□ -0.49
COL17A1-203ENST00000393211 SRGAP3O43295 1099 aa12□□□□□ -0.49
COL17A1-203ENST00000393211 GADD45BO75293 160 aaPredicted RBP12□□□□□ -0.49
COL17A1-203ENST00000393211 F13A1P00488 732 aa12□□□□□ -0.49
COL17A1-203ENST00000393211 TPM3P06753 285 aa12□□□□□ -0.49
COL17A1-203ENST00000393211 UQCRHP07919 91 aa12□□□□□ -0.49
COL17A1-203ENST00000393211 BEND3Q5T5X7 828 aa12□□□□□ -0.49
COL17A1-203ENST00000393211 VPS53Q5VIR6 699 aa12□□□□□ -0.49
COL17A1-203ENST00000393211 NUTM1Q86Y26 1132 aa12□□□□□ -0.49
COL17A1-203ENST00000393211 ERC1Q8IUD2 1116 aa12□□□□□ -0.49
COL17A1-203ENST00000393211 RNF214Q8ND24 703 aa12□□□□□ -0.49
COL17A1-203ENST00000393211 DNAAF4Q8WXU2 420 aa12□□□□□ -0.49
COL17A1-203ENST00000393211 IL1RAPL2Q9NP60 686 aa12□□□□□ -0.49
COL17A1-203ENST00000393211 SMC3Q9UQE7 1217 aa12□□□□□ -0.49
COL17A1-203ENST00000393211 CHD2O14647 1828 aaKnown RBP12□□□□□ -0.49
COL17A1-203ENST00000393211 SYT1P21579 422 aa12□□□□□ -0.49
COL17A1-203ENST00000393211 AK2P54819 239 aa12□□□□□ -0.49
COL17A1-203ENST00000393211 EIF4A1P60842 406 aaKnown RBP12□□□□□ -0.49
COL17A1-203ENST00000393211 NOL8Q76FK4 1167 aaKnown RBP12□□□□□ -0.49
COL17A1-203ENST00000393211 GPATCH3Q96I76 525 aa12□□□□□ -0.49
COL17A1-203ENST00000393211 PRIMPOLQ96LW4 560 aa12□□□□□ -0.49
COL17A1-203ENST00000393211 OVOS2A0A0G2JMS6 1433 aa11.99□□□□□ -0.49
COL17A1-203ENST00000393211 HIP1O00291 1037 aa11.99□□□□□ -0.49
COL17A1-203ENST00000393211 ALDH1L1O75891 902 aa11.99□□□□□ -0.49
COL17A1-203ENST00000393211 HMGN5P82970 282 aaKnown RBP11.99□□□□□ -0.49
COL17A1-203ENST00000393211 RUFY3Q7L099 469 aa11.99□□□□□ -0.49
COL17A1-203ENST00000393211 PIBF1Q8WXW3 757 aa11.99□□□□□ -0.49
COL17A1-203ENST00000393211 IL25Q9H293 177 aa11.99□□□□□ -0.49
COL17A1-203ENST00000393211 PHAXQ9H814 394 aaKnown RBP11.99□□□□□ -0.49
COL17A1-203ENST00000393211 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.99□□□□□ -0.49
COL17A1-203ENST00000393211 LMO7Q8WWI1 1683 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms