RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 MARF1Q9Y4F3 1742 aaKnown RBP21.52■■□□□ 1.03
SQSTM1-202ENST00000389805 PNMA6EA0A0J9YXQ4 647 aa21.51■■□□□ 1.03
SQSTM1-202ENST00000389805 ORAI2Q96SN7 254 aa21.51■■□□□ 1.03
SQSTM1-202ENST00000389805 CCDC39Q9UFE4 941 aa21.51■■□□□ 1.03
SQSTM1-202ENST00000389805 ZDHHC9Q9Y397 364 aa21.51■■□□□ 1.03
SQSTM1-202ENST00000389805 GNAI2P04899 355 aa21.51■■□□□ 1.03
SQSTM1-202ENST00000389805 EIF2S2P20042 333 aaKnown RBP21.51■■□□□ 1.03
SQSTM1-202ENST00000389805 LRSAM1Q6UWE0 723 aa21.51■■□□□ 1.03
SQSTM1-202ENST00000389805 FOXD4L6Q3SYB3 417 aaPredicted RBP21.51■■□□□ 1.03
SQSTM1-202ENST00000389805 LMOD2Q6P5Q4 547 aa21.51■■□□□ 1.03
SQSTM1-202ENST00000389805 FOXD4L3Q6VB84 417 aaPredicted RBP21.51■■□□□ 1.03
SQSTM1-202ENST00000389805 IP6K1Q92551 441 aa21.5■■□□□ 1.03
SQSTM1-202ENST00000389805 HMMRO75330 724 aa21.5■■□□□ 1.03
SQSTM1-202ENST00000389805 ZNF830Q96NB3 372 aaPredicted RBP21.5■■□□□ 1.03
SQSTM1-202ENST00000389805 KCNQ3O43525 872 aa21.49■■□□□ 1.03
SQSTM1-202ENST00000389805 TPRNQ4KMQ1 711 aa21.49■■□□□ 1.03
SQSTM1-202ENST00000389805 HDGFL1Q5TGJ6 251 aa21.48■■□□□ 1.03
SQSTM1-202ENST00000389805 USP26Q9BXU7 913 aa21.48■■□□□ 1.03
SQSTM1-202ENST00000389805 MTERF4Q7Z6M4 381 aaKnown RBP21.48■■□□□ 1.03
SQSTM1-202ENST00000389805 LRRFIP2Q9Y608 721 aaKnown RBP21.48■■□□□ 1.03
SQSTM1-202ENST00000389805 ANXA1P04083 346 aa21.46■■□□□ 1.03
SQSTM1-202ENST00000389805 PDE1AP54750 535 aa21.46■■□□□ 1.03
SQSTM1-202ENST00000389805 CBX1P83916 185 aa21.46■■□□□ 1.03
SQSTM1-202ENST00000389805 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP21.46■■□□□ 1.038e-8■■■■□ 19.4
SQSTM1-202ENST00000389805 C17orf53Q8N3J3 647 aaPredicted RBP21.46■■□□□ 1.03
SQSTM1-202ENST00000389805 MPRIPQ6WCQ1 1025 aa21.45■■□□□ 1.03
SQSTM1-202ENST00000389805 CCDC94Q9BW85 323 aaPredicted RBP21.45■■□□□ 1.03
SQSTM1-202ENST00000389805 USP44Q9H0E7 712 aa21.45■■□□□ 1.03
SQSTM1-202ENST00000389805 MCM5P33992 734 aa21.45■■□□□ 1.02
SQSTM1-202ENST00000389805 KIAA2012Q0VF49 1180 aa21.44■■□□□ 1.02
SQSTM1-202ENST00000389805 GNAI3P08754 354 aa21.43■■□□□ 1.02
SQSTM1-202ENST00000389805 NOL8Q76FK4 1167 aaKnown RBP21.43■■□□□ 1.02
SQSTM1-202ENST00000389805 ATP8B2P98198 1209 aa21.43■■□□□ 1.02
SQSTM1-202ENST00000389805 ST18O60284 1047 aa21.42■■□□□ 1.02
SQSTM1-202ENST00000389805 GCP02774 474 aa21.42■■□□□ 1.02
SQSTM1-202ENST00000389805 CWC22Q9HCG8 908 aaKnown RBP21.42■■□□□ 1.02
SQSTM1-202ENST00000389805 EIF4A1P60842 406 aaKnown RBP21.41■■□□□ 1.02
SQSTM1-202ENST00000389805 ZNF530Q6P9A1 599 aaPredicted RBP21.41■■□□□ 1.02
SQSTM1-202ENST00000389805 LRRCC1Q9C099 1032 aa21.41■■□□□ 1.02
SQSTM1-202ENST00000389805 CHPF2Q9P2E5 772 aa21.41■■□□□ 1.02
SQSTM1-202ENST00000389805 CHD2O14647 1828 aaKnown RBP21.41■■□□□ 1.02
SQSTM1-202ENST00000389805 ZSCAN20P17040 1043 aaPredicted RBP21.41■■□□□ 1.02
SQSTM1-202ENST00000389805 GDPD2Q9HCC8 539 aa21.41■■□□□ 1.02
SQSTM1-202ENST00000389805 LRRC37A3O60309 1634 aa21.4■■□□□ 1.02
SQSTM1-202ENST00000389805 IL1RAPL2Q9NP60 686 aa21.4■■□□□ 1.02
SQSTM1-202ENST00000389805 LTN1O94822 1766 aa21.4■■□□□ 1.02
SQSTM1-202ENST00000389805 ZNF710Q8N1W2 664 aa21.4■■□□□ 1.02
SQSTM1-202ENST00000389805 UBTFL1P0CB47 393 aaPredicted RBP21.39■■□□□ 1.02
SQSTM1-202ENST00000389805 DMTNQ08495 405 aa21.39■■□□□ 1.02
SQSTM1-202ENST00000389805 MYRIPQ8NFW9 859 aa21.39■■□□□ 1.02
SQSTM1-202ENST00000389805 CEMIPQ8WUJ3 1361 aa21.39■■□□□ 1.02
SQSTM1-202ENST00000389805 CASC1Q6TDU7 716 aa21.39■■□□□ 1.01
SQSTM1-202ENST00000389805 KCNH5Q8NCM2 988 aa21.39■■□□□ 1.01
SQSTM1-202ENST00000389805 AXIN2Q9Y2T1 843 aa21.39■■□□□ 1.01
SQSTM1-202ENST00000389805 TSPY26PQ9H489 355 aa21.39■■□□□ 1.01
SQSTM1-202ENST00000389805 TEFQ10587 303 aa21.38■■□□□ 1.01
SQSTM1-202ENST00000389805 OSBPL3Q9H4L5 887 aa21.38■■□□□ 1.01
SQSTM1-202ENST00000389805 TTC12Q9H892 705 aaPredicted RBP21.38■■□□□ 1.01
SQSTM1-202ENST00000389805 NFAT5O94916 1531 aa21.38■■□□□ 1.01
SQSTM1-202ENST00000389805 ADGRL3Q9HAR2 1447 aa21.38■■□□□ 1.01
SQSTM1-202ENST00000389805 BTBD11A6QL63 1104 aa21.38■■□□□ 1.01
SQSTM1-202ENST00000389805 NBPF7P0C2Y1 421 aaPredicted RBP21.38■■□□□ 1.01
SQSTM1-202ENST00000389805 PI4KAP2A4QPH2 592 aa21.37■■□□□ 1.01
SQSTM1-202ENST00000389805 PI4KAP1Q8N8J0 262 aa21.37■■□□□ 1.01
SQSTM1-202ENST00000389805 RILPL2Q969X0 211 aa21.37■■□□□ 1.01
SQSTM1-202ENST00000389805 BABAM1Q9NWV8 329 aa21.37■■□□□ 1.01
SQSTM1-202ENST00000389805 MX1P20591 662 aa21.37■■□□□ 1.01
SQSTM1-202ENST00000389805 SALL3Q9BXA9 1300 aa21.37■■□□□ 1.01
SQSTM1-202ENST00000389805 FAM208AQ9UK61 1670 aaKnown RBP21.36■■□□□ 1.01
SQSTM1-202ENST00000389805 ARHGEF25Q86VW2 580 aa21.36■■□□□ 1.01
SQSTM1-202ENST00000389805 PRAMEF22A3QJZ6 481 aa21.36■■□□□ 1.01
SQSTM1-202ENST00000389805 TRIM6-TRIM34B2RNG4 842 aa21.36■■□□□ 1.01
SQSTM1-202ENST00000389805 ERC2O15083 957 aa21.36■■□□□ 1.01
SQSTM1-202ENST00000389805 UNC5CLQ8IV45 518 aa21.36■■□□□ 1.01
SQSTM1-202ENST00000389805 RGPD2P0DJD1 1756 aa21.36■■□□□ 1.01
SQSTM1-202ENST00000389805 SPDYE4A6NLX3 237 aa21.36■■□□□ 1.01
SQSTM1-202ENST00000389805 PPP4R3BQ5MIZ7 849 aa21.36■■□□□ 1.01
SQSTM1-202ENST00000389805 PPP1R42Q7Z4L9 355 aa21.36■■□□□ 1.01
SQSTM1-202ENST00000389805 USP25Q9UHP3 1055 aa21.36■■□□□ 1.01
SQSTM1-202ENST00000389805 NEK4P51957 841 aa21.35■■□□□ 1.01
SQSTM1-202ENST00000389805 NUTM1Q86Y26 1132 aa21.35■■□□□ 1.01
SQSTM1-202ENST00000389805 SRCIN1Q9C0H9 1055 aa21.35■■□□□ 1.01
SQSTM1-202ENST00000389805 ATP2B3Q16720 1220 aa21.35■■□□□ 1.01
SQSTM1-202ENST00000389805 ANKRD24Q8TF21 1146 aa21.35■■□□□ 1.01
SQSTM1-202ENST00000389805 IGSF3O75054 1194 aa21.34■■□□□ 1.01
SQSTM1-202ENST00000389805 REC8O95072 547 aa21.34■■□□□ 1.01
SQSTM1-202ENST00000389805 PLCB2Q00722 1185 aa21.34■■□□□ 1.01
SQSTM1-202ENST00000389805 NOLC1Q14978 699 aaKnown RBP eCLIP21.34■■□□□ 1.01
SQSTM1-202ENST00000389805 PLEKHO1Q53GL0 409 aaPredicted RBP21.34■■□□□ 1.01
SQSTM1-202ENST00000389805 AKAP4Q5JQC9 854 aa21.34■■□□□ 1.01
SQSTM1-202ENST00000389805 GADD45BO75293 160 aaPredicted RBP21.33■■□□□ 1.01
SQSTM1-202ENST00000389805 SURF6O75683 361 aaKnown RBP21.33■■□□□ 1.01
SQSTM1-202ENST00000389805 MBD3O95983 291 aa21.33■■□□□ 1.01
SQSTM1-202ENST00000389805 ZC3H6P61129 1189 aaKnown RBP21.33■■□□□ 1.01
SQSTM1-202ENST00000389805 MAP4K4O95819 1239 aaPredicted RBP21.33■■□□□ 1.01
SQSTM1-202ENST00000389805 DDX17Q92841 729 aaKnown RBP21.33■■□□□ 1.01
SQSTM1-202ENST00000389805 USP54Q70EL1 1684 aa21.32■■□□□ 1
SQSTM1-202ENST00000389805 PROSER3Q2NL68 480 aa21.32■■□□□ 1
SQSTM1-202ENST00000389805 PROSER2Q86WR7 435 aaPredicted RBP21.32■■□□□ 1
SQSTM1-202ENST00000389805 TMX3Q96JJ7 454 aa21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms