RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 PNPLA6Q8IY17 1366 aa17.6■□□□□ 0.41
VPS9D1-201ENST00000389386 DNAJC2Q99543 621 aaKnown RBP17.6■□□□□ 0.41
VPS9D1-201ENST00000389386 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.6■□□□□ 0.41
VPS9D1-201ENST00000389386 ATP7BP35670 1465 aa17.59■□□□□ 0.41
VPS9D1-201ENST00000389386 COG3Q96JB2 828 aa17.59■□□□□ 0.41
VPS9D1-201ENST00000389386 SPC24Q8NBT2 197 aa17.59■□□□□ 0.41
VPS9D1-201ENST00000389386 ZFP91Q96JP5 570 aaPredicted RBP17.59■□□□□ 0.41
VPS9D1-201ENST00000389386 WDR33Q9C0J8 1336 aaKnown RBP17.59■□□□□ 0.41
VPS9D1-201ENST00000389386 TCHHQ07283 1943 aa17.58■□□□□ 0.41
VPS9D1-201ENST00000389386 NAA30Q147X3 362 aaPredicted RBP17.58■□□□□ 0.41
VPS9D1-201ENST00000389386 CPSF1Q10570 1443 aaKnown RBP17.58■□□□□ 0.41
VPS9D1-201ENST00000389386 GOLGA6L6A8MZA4 724 aa17.58■□□□□ 0.4
VPS9D1-201ENST00000389386 TULP2O00295 520 aa17.58■□□□□ 0.4
VPS9D1-201ENST00000389386 SIRT1Q96EB6 747 aa17.58■□□□□ 0.4
VPS9D1-201ENST00000389386 KNDC1Q76NI1 1749 aa17.58■□□□□ 0.4
VPS9D1-201ENST00000389386 ELL2O00472 640 aaPredicted RBP17.57■□□□□ 0.4
VPS9D1-201ENST00000389386 KRT222Q8N1A0 295 aa17.57■□□□□ 0.4
VPS9D1-201ENST00000389386 EDC4Q6P2E9 1401 aaKnown RBP17.57■□□□□ 0.4
VPS9D1-201ENST00000389386 FCHSD2O94868 740 aa17.56■□□□□ 0.4
VPS9D1-201ENST00000389386 TSPYL6Q8N831 410 aa17.56■□□□□ 0.4
VPS9D1-201ENST00000389386 LRRC7Q96NW7 1537 aa17.56■□□□□ 0.4
VPS9D1-201ENST00000389386 RTL1A6NKG5 1358 aa17.56■□□□□ 0.4
VPS9D1-201ENST00000389386 RPAP1Q9BWH6 1393 aaPredicted RBP17.56■□□□□ 0.4
VPS9D1-201ENST00000389386 NPHP4O75161 1426 aaPredicted RBP17.56■□□□□ 0.4
VPS9D1-201ENST00000389386 CAPN2P17655 700 aa17.56■□□□□ 0.4
VPS9D1-201ENST00000389386 SRCIN1Q9C0H9 1055 aa17.56■□□□□ 0.4
VPS9D1-201ENST00000389386 FAM53CQ9NYF3 392 aa17.56■□□□□ 0.4
VPS9D1-201ENST00000389386 PTGS1P23219 599 aa17.55■□□□□ 0.4
VPS9D1-201ENST00000389386 IL13P35225 146 aa17.55■□□□□ 0.4
VPS9D1-201ENST00000389386 UBE2HP62256 183 aa17.55■□□□□ 0.4
VPS9D1-201ENST00000389386 CNPY2Q9Y2B0 182 aa17.55■□□□□ 0.4
VPS9D1-201ENST00000389386 ACEP12821 1306 aa17.55■□□□□ 0.4
VPS9D1-201ENST00000389386 FAM83GA6ND36 823 aa17.55■□□□□ 0.4
VPS9D1-201ENST00000389386 GIMAP6Q6P9H5 292 aa17.55■□□□□ 0.4
VPS9D1-201ENST00000389386 ANKRD44Q8N8A2 993 aa17.55■□□□□ 0.4
VPS9D1-201ENST00000389386 CALCOCO1Q9P1Z2 691 aa17.55■□□□□ 0.4
VPS9D1-201ENST00000389386 DCTN1Q14203 1278 aa17.54■□□□□ 0.4
VPS9D1-201ENST00000389386 NOL8Q76FK4 1167 aaKnown RBP17.54■□□□□ 0.4
VPS9D1-201ENST00000389386 PAXBP1Q9Y5B6 917 aa17.54■□□□□ 0.4
VPS9D1-201ENST00000389386 KIF24Q5T7B8 1368 aa17.54■□□□□ 0.4
VPS9D1-201ENST00000389386 C14orf37Q86TY3 774 aa17.54■□□□□ 0.4
VPS9D1-201ENST00000389386 C16orf45Q96MC5 204 aaPredicted RBP17.54■□□□□ 0.4
VPS9D1-201ENST00000389386 API5Q9BZZ5 524 aaKnown RBP17.54■□□□□ 0.4
VPS9D1-201ENST00000389386 PALD1Q9ULE6 856 aa17.54■□□□□ 0.4
VPS9D1-201ENST00000389386 TNNT1P13805 278 aa17.53■□□□□ 0.4
VPS9D1-201ENST00000389386 AEBP1Q8IUX7 1158 aa17.53■□□□□ 0.4
VPS9D1-201ENST00000389386 CCDC112Q8NEF3 446 aa17.53■□□□□ 0.4
VPS9D1-201ENST00000389386 FAM193AP78312 1265 aa17.52■□□□□ 0.39
VPS9D1-201ENST00000389386 MAPK8IP2Q13387 824 aaPredicted RBP17.52■□□□□ 0.39
VPS9D1-201ENST00000389386 ANAPC15P60006 121 aa17.51■□□□□ 0.39
VPS9D1-201ENST00000389386 TPRNQ4KMQ1 711 aa17.51■□□□□ 0.39
VPS9D1-201ENST00000389386 KMT5BQ4FZB7 885 aa17.51■□□□□ 0.39
VPS9D1-201ENST00000389386 ZNF397Q8NF99 534 aaPredicted RBP17.51■□□□□ 0.39
VPS9D1-201ENST00000389386 ATP10DQ9P241 1426 aa17.51■□□□□ 0.39
VPS9D1-201ENST00000389386 DIP2AQ14689 1571 aa17.51■□□□□ 0.39
VPS9D1-201ENST00000389386 NFE2L2Q16236 605 aa17.5■□□□□ 0.39
VPS9D1-201ENST00000389386 RGS12O14924 1447 aa17.5■□□□□ 0.39
VPS9D1-201ENST00000389386 CDC42BPGQ6DT37 1551 aa17.5■□□□□ 0.39
VPS9D1-201ENST00000389386 TTC21BQ7Z4L5 1316 aa17.5■□□□□ 0.39
VPS9D1-201ENST00000389386 ERICH4A6NGS2 130 aa17.5■□□□□ 0.39
VPS9D1-201ENST00000389386 LRMPQ12912 555 aa17.5■□□□□ 0.39
VPS9D1-201ENST00000389386 RPAP2Q8IXW5 612 aaPredicted RBP17.5■□□□□ 0.39
VPS9D1-201ENST00000389386 APBB1O00213 710 aa17.49■□□□□ 0.39
VPS9D1-201ENST00000389386 CCDC186Q7Z3E2 898 aa17.49■□□□□ 0.39
VPS9D1-201ENST00000389386 TEX2Q8IWB9 1127 aa17.49■□□□□ 0.39
VPS9D1-201ENST00000389386 IFT57Q9NWB7 429 aa17.49■□□□□ 0.39
VPS9D1-201ENST00000389386 CEP85Q6P2H3 762 aa17.49■□□□□ 0.39
VPS9D1-201ENST00000389386 ESYT1Q9BSJ8 1104 aa17.49■□□□□ 0.39
VPS9D1-201ENST00000389386 XRN1Q8IZH2 1706 aaKnown RBP17.49■□□□□ 0.39
VPS9D1-201ENST00000389386 ZSCAN22P10073 491 aaPredicted RBP17.49■□□□□ 0.39
VPS9D1-201ENST00000389386 MCCP23508 829 aa17.49■□□□□ 0.39
VPS9D1-201ENST00000389386 HSP90AB2PQ58FF8 381 aa17.49■□□□□ 0.39
VPS9D1-201ENST00000389386 IL17RAQ96F46 866 aa17.49■□□□□ 0.39
VPS9D1-201ENST00000389386 OSBPL3Q9H4L5 887 aa17.49■□□□□ 0.39
VPS9D1-201ENST00000389386 CHD2O14647 1828 aaKnown RBP17.48■□□□□ 0.39
VPS9D1-201ENST00000389386 NUTM2GQ5VZR2 741 aa17.48■□□□□ 0.39
VPS9D1-201ENST00000389386 CREBRFQ8IUR6 639 aa17.48■□□□□ 0.39
VPS9D1-201ENST00000389386 RGPD8O14715 1765 aaPredicted RBP17.48■□□□□ 0.39
VPS9D1-201ENST00000389386 SULT6B1Q6IMI4 303 aa17.48■□□□□ 0.39
VPS9D1-201ENST00000389386 SECISBP2LQ93073 1101 aaKnown RBP17.48■□□□□ 0.39
VPS9D1-201ENST00000389386 RBM6P78332 1123 aaKnown RBP17.47■□□□□ 0.39
VPS9D1-201ENST00000389386 UPF3BQ9BZI7 483 aaKnown RBP17.47■□□□□ 0.39
VPS9D1-201ENST00000389386 CCDC192P0DO97 292 aa17.47■□□□□ 0.39
VPS9D1-201ENST00000389386 EIF4A2Q14240 407 aaKnown RBP17.47■□□□□ 0.39
VPS9D1-201ENST00000389386 TWISTNBQ3B726 338 aaPredicted RBP17.47■□□□□ 0.39
VPS9D1-201ENST00000389386 PROSER2Q86WR7 435 aaPredicted RBP17.47■□□□□ 0.39
VPS9D1-201ENST00000389386 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.47■□□□□ 0.39
VPS9D1-201ENST00000389386 CHRM1P11229 460 aaPredicted RBP17.46■□□□□ 0.39
VPS9D1-201ENST00000389386 PDE1AP54750 535 aa17.46■□□□□ 0.39
VPS9D1-201ENST00000389386 ZNF853P0CG23 659 aa17.46■□□□□ 0.39
VPS9D1-201ENST00000389386 GNAI1P63096 354 aa17.46■□□□□ 0.39
VPS9D1-201ENST00000389386 ZSCAN25Q6NSZ9 544 aa17.46■□□□□ 0.39
VPS9D1-201ENST00000389386 NGDNQ8NEJ9 315 aaKnown RBP17.46■□□□□ 0.39
VPS9D1-201ENST00000389386 TSPYL1Q9H0U9 437 aa17.46■□□□□ 0.39
VPS9D1-201ENST00000389386 MBIPQ9NS73 344 aa17.46■□□□□ 0.39
VPS9D1-201ENST00000389386 NRBP1Q9UHY1 535 aa17.46■□□□□ 0.39
VPS9D1-201ENST00000389386 FIBPO43427 364 aa17.45■□□□□ 0.38
VPS9D1-201ENST00000389386 FAM200AQ8TCP9 573 aa17.45■□□□□ 0.38
VPS9D1-201ENST00000389386 ST7Q9NRC1 585 aa17.45■□□□□ 0.38
VPS9D1-201ENST00000389386 MON2Q7Z3U7 1717 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms