RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 GJB2P29033 226 aa18.98■□□□□ 0.63
CKAP4-201ENST00000378026 CCT4P50991 539 aaKnown RBP18.98■□□□□ 0.63
CKAP4-201ENST00000378026 UHRF1BP1LA0JNW5 1464 aa18.98■□□□□ 0.63
CKAP4-201ENST00000378026 TSPYL4Q9UJ04 414 aa18.98■□□□□ 0.63
CKAP4-201ENST00000378026 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.98■□□□□ 0.63
CKAP4-201ENST00000378026 LRRFIP2Q9Y608 721 aaKnown RBP18.98■□□□□ 0.63
CKAP4-201ENST00000378026 POGZQ7Z3K3 1410 aa18.98■□□□□ 0.63
CKAP4-201ENST00000378026 CWC27Q6UX04 472 aaKnown RBP18.97■□□□□ 0.63
CKAP4-201ENST00000378026 LIMCH1Q9UPQ0 1083 aa18.97■□□□□ 0.63
CKAP4-201ENST00000378026 CASTP20810 708 aaKnown RBP18.97■□□□□ 0.63
CKAP4-201ENST00000378026 ATP6V1DQ9Y5K8 247 aa18.97■□□□□ 0.63
CKAP4-201ENST00000378026 CTIFO43310 598 aaKnown RBP18.97■□□□□ 0.63
CKAP4-201ENST00000378026 ZBTB22O15209 634 aa18.96■□□□□ 0.63
CKAP4-201ENST00000378026 RAPGEF3O95398 923 aa18.96■□□□□ 0.63
CKAP4-201ENST00000378026 TNNT1P13805 278 aa18.96■□□□□ 0.63
CKAP4-201ENST00000378026 FGD1P98174 961 aa18.96■□□□□ 0.63
CKAP4-201ENST00000378026 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.96■□□□□ 0.63
CKAP4-201ENST00000378026 EIF4A2Q14240 407 aaKnown RBP18.95■□□□□ 0.62
CKAP4-201ENST00000378026 KIAA0232Q92628 1395 aa18.95■□□□□ 0.62
CKAP4-201ENST00000378026 TPM3P06753 285 aa18.95■□□□□ 0.62
CKAP4-201ENST00000378026 NECAB1Q8N987 351 aa18.95■□□□□ 0.62
CKAP4-201ENST00000378026 TRIM5Q9C035 493 aa18.95■□□□□ 0.62
CKAP4-201ENST00000378026 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.95■□□□□ 0.622e-7■■■□□ 15
CKAP4-201ENST00000378026 V9GYY5 206 aaPredicted RBP18.95■□□□□ 0.62
CKAP4-201ENST00000378026 KIF20BQ96Q89 1820 aa18.95■□□□□ 0.62
CKAP4-201ENST00000378026 CPSF1Q10570 1443 aaKnown RBP18.95■□□□□ 0.62
CKAP4-201ENST00000378026 OGFRQ9NZT2 677 aa18.94■□□□□ 0.62
CKAP4-201ENST00000378026 ATP8B2P98198 1209 aa18.94■□□□□ 0.62
CKAP4-201ENST00000378026 LIG1P18858 919 aa18.94■□□□□ 0.62
CKAP4-201ENST00000378026 TTC14Q96N46 770 aa18.94■□□□□ 0.62
CKAP4-201ENST00000378026 STK31Q9BXU1 1019 aa18.94■□□□□ 0.62
CKAP4-201ENST00000378026 MTMR6Q9Y217 621 aa18.94■□□□□ 0.62
CKAP4-201ENST00000378026 FAM200AQ8TCP9 573 aa18.93■□□□□ 0.62
CKAP4-201ENST00000378026 TPD52L1Q16890 204 aaPredicted RBP18.93■□□□□ 0.62
CKAP4-201ENST00000378026 FBXO31Q5XUX0 539 aaPredicted RBP18.93■□□□□ 0.62
CKAP4-201ENST00000378026 FEZ1Q99689 392 aa18.93■□□□□ 0.62
CKAP4-201ENST00000378026 SURF6O75683 361 aaKnown RBP18.92■□□□□ 0.62
CKAP4-201ENST00000378026 TYRO3Q06418 890 aa18.92■□□□□ 0.62
CKAP4-201ENST00000378026 ANO6Q4KMQ2 910 aa18.92■□□□□ 0.62
CKAP4-201ENST00000378026 CTNNA3Q9UI47 895 aa18.92■□□□□ 0.62
CKAP4-201ENST00000378026 SIGLEC1Q9BZZ2 1709 aa18.92■□□□□ 0.62
CKAP4-201ENST00000378026 MAP3K11Q16584 847 aa18.92■□□□□ 0.62
CKAP4-201ENST00000378026 NUP62CLQ9H1M0 184 aa18.92■□□□□ 0.62
CKAP4-201ENST00000378026 MRVI1Q9Y6F6 885 aa18.92■□□□□ 0.62
CKAP4-201ENST00000378026 RAD50Q92878 1312 aa18.92■□□□□ 0.62
CKAP4-201ENST00000378026 CCDC112Q8NEF3 446 aa18.92■□□□□ 0.62
CKAP4-201ENST00000378026 SGSM2O43147 1006 aa18.91■□□□□ 0.62
CKAP4-201ENST00000378026 GNAI3P08754 354 aa18.91■□□□□ 0.62
CKAP4-201ENST00000378026 HSP90AB2PQ58FF8 381 aa18.91■□□□□ 0.62
CKAP4-201ENST00000378026 TTC6Q86TZ1 520 aa18.91■□□□□ 0.62
CKAP4-201ENST00000378026 JAKMIP1Q96N16 626 aaKnown RBP18.91■□□□□ 0.62
CKAP4-201ENST00000378026 TFIP11Q9UBB9 837 aaKnown RBP18.91■□□□□ 0.62
CKAP4-201ENST00000378026 STAP2Q9UGK3 403 aa18.91■□□□□ 0.62
CKAP4-201ENST00000378026 SSH2Q76I76 1423 aa18.91■□□□□ 0.62
CKAP4-201ENST00000378026 ADCK5Q3MIX3 580 aa18.91■□□□□ 0.62
CKAP4-201ENST00000378026 RTF1Q92541 710 aaKnown RBP18.91■□□□□ 0.62
CKAP4-201ENST00000378026 NUTM2FA1L443 756 aa18.9■□□□□ 0.62
CKAP4-201ENST00000378026 FLIIQ13045 1269 aa18.9■□□□□ 0.62
CKAP4-201ENST00000378026 CBX8Q9HC52 389 aa18.9■□□□□ 0.62
CKAP4-201ENST00000378026 SLC52A1Q9NWF4 448 aa18.9■□□□□ 0.62
CKAP4-201ENST00000378026 GOLGA6L4A6NEF3 574 aa18.9■□□□□ 0.62
CKAP4-201ENST00000378026 LSG1Q9H089 658 aaKnown RBP18.9■□□□□ 0.62
CKAP4-201ENST00000378026 CDK12Q9NYV4 1490 aaPredicted RBP18.9■□□□□ 0.62
CKAP4-201ENST00000378026 NPHP1O15259 732 aa18.89■□□□□ 0.62
CKAP4-201ENST00000378026 PRPF40BQ6NWY9 871 aaKnown RBP18.89■□□□□ 0.62
CKAP4-201ENST00000378026 TNMDQ9H2S6 317 aa18.89■□□□□ 0.62
CKAP4-201ENST00000378026 PDRG1Q9NUG6 133 aa18.89■□□□□ 0.62
CKAP4-201ENST00000378026 DACT1Q9NYF0 836 aa18.89■□□□□ 0.62
CKAP4-201ENST00000378026 SMTNL1A8MU46 457 aa18.89■□□□□ 0.61
CKAP4-201ENST00000378026 LARP1BQ659C4 914 aaKnown RBP18.89■□□□□ 0.61
CKAP4-201ENST00000378026 ZSCAN25Q6NSZ9 544 aa18.89■□□□□ 0.61
CKAP4-201ENST00000378026 HYPKQ9NX55 129 aa18.89■□□□□ 0.61
CKAP4-201ENST00000378026 FRMPD1Q5SYB0 1578 aa18.88■□□□□ 0.61
CKAP4-201ENST00000378026 ASXL2Q76L83 1435 aa18.88■□□□□ 0.61
CKAP4-201ENST00000378026 UBTFL1P0CB47 393 aaPredicted RBP18.87■□□□□ 0.61
CKAP4-201ENST00000378026 GTF2E1P29083 439 aaPredicted RBP18.87■□□□□ 0.61
CKAP4-201ENST00000378026 TCEANC2Q96MN5 208 aa18.87■□□□□ 0.61
CKAP4-201ENST00000378026 MAPK8IP2Q13387 824 aaPredicted RBP18.87■□□□□ 0.61
CKAP4-201ENST00000378026 CDC37L1Q7L3B6 337 aa18.87■□□□□ 0.61
CKAP4-201ENST00000378026 CACTINQ8WUQ7 758 aaKnown RBP18.87■□□□□ 0.61
CKAP4-201ENST00000378026 NUDT16Q96DE0 195 aaKnown RBP18.87■□□□□ 0.61
CKAP4-201ENST00000378026 ERICH4A6NGS2 130 aa18.87■□□□□ 0.61
CKAP4-201ENST00000378026 VGLL3A8MV65 326 aa18.87■□□□□ 0.61
CKAP4-201ENST00000378026 PTH1RQ03431 593 aa18.87■□□□□ 0.61
CKAP4-201ENST00000378026 ARID5BQ14865 1188 aa18.87■□□□□ 0.61
CKAP4-201ENST00000378026 ME3Q16798 604 aa18.87■□□□□ 0.61
CKAP4-201ENST00000378026 TXNDC2Q86VQ3 553 aa18.87■□□□□ 0.61
CKAP4-201ENST00000378026 DNAJC25Q9H1X3 360 aa18.87■□□□□ 0.61
CKAP4-201ENST00000378026 CLIP2Q9UDT6 1046 aa18.87■□□□□ 0.61
CKAP4-201ENST00000378026 PIK3C2BO00750 1634 aa18.87■□□□□ 0.61
CKAP4-201ENST00000378026 HECW2Q9P2P5 1572 aa18.86■□□□□ 0.61
CKAP4-201ENST00000378026 KRT85P78386 507 aa18.86■□□□□ 0.61
CKAP4-201ENST00000378026 PPP1R42Q7Z4L9 355 aa18.86■□□□□ 0.61
CKAP4-201ENST00000378026 DDX41Q9UJV9 622 aaKnown RBP18.86■□□□□ 0.61
CKAP4-201ENST00000378026 CNTROBQ8N137 903 aa18.86■□□□□ 0.61
CKAP4-201ENST00000378026 WASLO00401 505 aaPredicted RBP18.85■□□□□ 0.61
CKAP4-201ENST00000378026 ZNF75DP51815 510 aa18.85■□□□□ 0.61
CKAP4-201ENST00000378026 MTHFSDQ2M296 383 aaKnown RBP18.85■□□□□ 0.61
CKAP4-201ENST00000378026 CCDC144BQ3MJ40 725 aa18.85■□□□□ 0.61
CKAP4-201ENST00000378026 CCDC144CPQ8IYA2 1237 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms