RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 AQRO60306 1485 aaKnown RBP eCLIP12.28□□□□□ -0.442e-7■■■■□ 19.7
RTN3-206ENST00000377819 ST20-MTHFSA0A0A6YYL1 179 aa12.28□□□□□ -0.44
RTN3-206ENST00000377819 BIRC2Q13490 618 aa12.28□□□□□ -0.44
RTN3-206ENST00000377819 CCDC82Q8N4S0 544 aa12.28□□□□□ -0.44
RTN3-206ENST00000377819 ALS2CR12Q96Q35 445 aa12.28□□□□□ -0.44
RTN3-206ENST00000377819 PRC1O43663 620 aa12.28□□□□□ -0.44
RTN3-206ENST00000377819 UQCRHP07919 91 aa12.28□□□□□ -0.44
RTN3-206ENST00000377819 SETD5Q9C0A6 1442 aa12.28□□□□□ -0.44
RTN3-206ENST00000377819 LIG1P18858 919 aa12.28□□□□□ -0.44
RTN3-206ENST00000377819 YEATS4O95619 227 aa12.27□□□□□ -0.44
RTN3-206ENST00000377819 GNAI2P04899 355 aa12.27□□□□□ -0.44
RTN3-206ENST00000377819 POLR3DP05423 398 aaPredicted RBP12.27□□□□□ -0.44
RTN3-206ENST00000377819 HSPA4P34932 840 aa12.27□□□□□ -0.44
RTN3-206ENST00000377819 CLIP2Q9UDT6 1046 aa12.27□□□□□ -0.44
RTN3-206ENST00000377819 ABCF2Q9UG63 623 aa12.27□□□□□ -0.44
RTN3-206ENST00000377819 IGHMBP2P38935 993 aaKnown RBP12.27□□□□□ -0.45
RTN3-206ENST00000377819 CKAP4Q07065 602 aaKnown RBP12.27□□□□□ -0.45
RTN3-206ENST00000377819 USP37Q86T82 979 aa12.27□□□□□ -0.45
RTN3-206ENST00000377819 CTCFLQ8NI51 663 aaPredicted RBP12.27□□□□□ -0.45
RTN3-206ENST00000377819 STRN4Q9NRL3 753 aa12.27□□□□□ -0.45
RTN3-206ENST00000377819 ATP2A1O14983 1001 aa12.27□□□□□ -0.45
RTN3-206ENST00000377819 CCDC172P0C7W6 258 aa12.27□□□□□ -0.45
RTN3-206ENST00000377819 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.27□□□□□ -0.45
RTN3-206ENST00000377819 KLHL10Q6JEL2 608 aa12.27□□□□□ -0.45
RTN3-206ENST00000377819 SYNCQ9H7C4 482 aa12.27□□□□□ -0.45
RTN3-206ENST00000377819 ARHGAP35Q9NRY4 1499 aa12.27□□□□□ -0.45
RTN3-206ENST00000377819 GPRASP1Q5JY77 1395 aa12.26□□□□□ -0.45
RTN3-206ENST00000377819 BAG4O95429 457 aaKnown RBP12.26□□□□□ -0.45
RTN3-206ENST00000377819 HMOX1P09601 288 aa12.26□□□□□ -0.45
RTN3-206ENST00000377819 TAF12Q16514 161 aa12.26□□□□□ -0.45
RTN3-206ENST00000377819 SNAPC4Q5SXM2 1469 aa12.26□□□□□ -0.45
RTN3-206ENST00000377819 TTC36A6NLP5 189 aa12.26□□□□□ -0.45
RTN3-206ENST00000377819 MNAT1P51948 309 aa12.26□□□□□ -0.45
RTN3-206ENST00000377819 MPNDQ8N594 471 aa12.26□□□□□ -0.45
RTN3-206ENST00000377819 AIDAQ96BJ3 306 aa12.26□□□□□ -0.45
RTN3-206ENST00000377819 STIM2Q9P246 746 aa12.26□□□□□ -0.45
RTN3-206ENST00000377819 PDS5BQ9NTI5 1447 aa12.26□□□□□ -0.45
RTN3-206ENST00000377819 MAATS1Q7Z4T9 603 aa12.26□□□□□ -0.45
RTN3-206ENST00000377819 POTEB2H3BUK9 544 aa12.25□□□□□ -0.45
RTN3-206ENST00000377819 TOP1P11387 765 aaKnown RBP12.25□□□□□ -0.45
RTN3-206ENST00000377819 SPTY2D1Q68D10 685 aaPredicted RBP12.25□□□□□ -0.45
RTN3-206ENST00000377819 CCDC144CPQ8IYA2 1237 aa12.25□□□□□ -0.45
RTN3-206ENST00000377819 TXNDC16Q9P2K2 825 aa12.25□□□□□ -0.45
RTN3-206ENST00000377819 RIOK3O14730 519 aaKnown RBP12.25□□□□□ -0.45
RTN3-206ENST00000377819 IDH1O75874 414 aaKnown RBP12.25□□□□□ -0.45
RTN3-206ENST00000377819 SATB1Q01826 763 aa12.25□□□□□ -0.45
RTN3-206ENST00000377819 IFI16Q16666 785 aaKnown RBP12.25□□□□□ -0.45
RTN3-206ENST00000377819 HDGFL1Q5TGJ6 251 aa12.25□□□□□ -0.45
RTN3-206ENST00000377819 NSRP1Q9H0G5 558 aaKnown RBP12.25□□□□□ -0.45
RTN3-206ENST00000377819 PFDN4Q9NQP4 134 aa12.25□□□□□ -0.45
RTN3-206ENST00000377819 FAM114A2Q9NRY5 505 aa12.25□□□□□ -0.45
RTN3-206ENST00000377819 PODXL2Q9NZ53 605 aa12.25□□□□□ -0.45
RTN3-206ENST00000377819 VTI1AQ96AJ9 217 aa12.25□□□□□ -0.45
RTN3-206ENST00000377819 RAB3IPQ96QF0 476 aaPredicted RBP12.25□□□□□ -0.45
RTN3-206ENST00000377819 CCDC40Q4G0X9 1142 aa12.24□□□□□ -0.45
RTN3-206ENST00000377819 GPATCH11Q8N954 259 aa12.24□□□□□ -0.45
RTN3-206ENST00000377819 IDEP14735 1019 aa12.24□□□□□ -0.45
RTN3-206ENST00000377819 CABP4P57796 275 aa12.24□□□□□ -0.45
RTN3-206ENST00000377819 PNISRQ8TF01 805 aaKnown RBP12.24□□□□□ -0.45
RTN3-206ENST00000377819 TTC12Q9H892 705 aaPredicted RBP12.24□□□□□ -0.45
RTN3-206ENST00000377819 UGGT2Q9NYU1 1516 aa12.24□□□□□ -0.45
RTN3-206ENST00000377819 CCDC194A0A1B0GVG4 234 aa12.24□□□□□ -0.45
RTN3-206ENST00000377819 ZFYP08048 801 aaPredicted RBP12.24□□□□□ -0.45
RTN3-206ENST00000377819 MTIF2P46199 727 aaKnown RBP12.24□□□□□ -0.45
RTN3-206ENST00000377819 MAP3K11Q16584 847 aa12.24□□□□□ -0.45
RTN3-206ENST00000377819 SYCP3Q8IZU3 236 aa12.24□□□□□ -0.45
RTN3-206ENST00000377819 TTC14Q96N46 770 aa12.24□□□□□ -0.45
RTN3-206ENST00000377819 ZMYND15Q9H091 742 aa12.24□□□□□ -0.45
RTN3-206ENST00000377819 AMPD3Q01432 767 aa12.23□□□□□ -0.45
RTN3-206ENST00000377819 ZNF444Q8N0Y2 327 aaPredicted RBP12.23□□□□□ -0.45
RTN3-206ENST00000377819 DNAAF4Q8WXU2 420 aa12.23□□□□□ -0.45
RTN3-206ENST00000377819 NCAPGQ9BPX3 1015 aa12.23□□□□□ -0.45
RTN3-206ENST00000377819 CTR9Q6PD62 1173 aa12.23□□□□□ -0.45
RTN3-206ENST00000377819 SRCIN1Q9C0H9 1055 aa12.23□□□□□ -0.45
RTN3-206ENST00000377819 MGEA5O60502 916 aa12.23□□□□□ -0.45
RTN3-206ENST00000377819 IQCA1Q86XH1 822 aa12.23□□□□□ -0.45
RTN3-206ENST00000377819 ANO10Q9NW15 660 aa12.23□□□□□ -0.45
RTN3-206ENST00000377819 WDR66Q8TBY9 1149 aa12.23□□□□□ -0.45
RTN3-206ENST00000377819 GCC1Q96CN9 775 aa12.23□□□□□ -0.45
RTN3-206ENST00000377819 TACC3Q9Y6A5 838 aa12.23□□□□□ -0.45
RTN3-206ENST00000377819 CCDC63Q8NA47 563 aa12.22□□□□□ -0.45
RTN3-206ENST00000377819 NUP88Q99567 741 aaPredicted RBP12.22□□□□□ -0.45
RTN3-206ENST00000377819 RAD54L2Q9Y4B4 1467 aa12.22□□□□□ -0.45
RTN3-206ENST00000377819 SLF2Q8IX21 1173 aa12.22□□□□□ -0.45
RTN3-206ENST00000377819 SIL1Q9H173 461 aa12.22□□□□□ -0.45
RTN3-206ENST00000377819 ARID4AP29374 1257 aaPredicted RBP12.22□□□□□ -0.45
RTN3-206ENST00000377819 DDX54Q8TDD1 881 aaKnown RBP12.22□□□□□ -0.45
RTN3-206ENST00000377819 TCP11L1Q9NUJ3 509 aa12.22□□□□□ -0.45
RTN3-206ENST00000377819 NOC2LQ9Y3T9 749 aaKnown RBP12.22□□□□□ -0.45
RTN3-206ENST00000377819 VIMP08670 466 aaKnown RBP12.22□□□□□ -0.45
RTN3-206ENST00000377819 CWC25Q9NXE8 425 aaPredicted RBP12.22□□□□□ -0.45
RTN3-206ENST00000377819 ZBTB24O43167 697 aaPredicted RBP12.21□□□□□ -0.45
RTN3-206ENST00000377819 CAVIN4Q5BKX8 364 aa12.21□□□□□ -0.45
RTN3-206ENST00000377819 TOM1L2Q6ZVM7 507 aa12.21□□□□□ -0.45
RTN3-206ENST00000377819 MIPOL1Q8TD10 442 aa12.21□□□□□ -0.45
RTN3-206ENST00000377819 GOLGA6L9A6NEM1 432 aa12.21□□□□□ -0.45
RTN3-206ENST00000377819 IFIT1P09914 478 aaKnown RBP12.21□□□□□ -0.45
RTN3-206ENST00000377819 ALDH3A1P30838 453 aa12.21□□□□□ -0.45
RTN3-206ENST00000377819 HNRNPMP52272 730 aaKnown RBP eCLIP12.21□□□□□ -0.45
RTN3-206ENST00000377819 KIF5AQ12840 1032 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms