RNA–Protein interactions for RNA: ENST00000375661.5

LSM2-208, Transcript of LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM2, Length 876 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM2-208ENST00000375661 MRC1P22897 1456 aa16.47■□□□□ 0.23
LSM2-208ENST00000375661 CCDC88AQ3V6T2 1871 aa16.46■□□□□ 0.23
LSM2-208ENST00000375661 ZNF316A6NFI3 1004 aaPredicted RBP16.46■□□□□ 0.23
LSM2-208ENST00000375661 IL13P35225 146 aa16.46■□□□□ 0.23
LSM2-208ENST00000375661 KLRG1Q96E93 195 aa16.46■□□□□ 0.23
LSM2-208ENST00000375661 SOS1Q07889 1333 aaPredicted RBP16.45■□□□□ 0.22
LSM2-208ENST00000375661 JMYQ8N9B5 988 aa16.45■□□□□ 0.22
LSM2-208ENST00000375661 SLC52A2Q9HAB3 445 aa16.45■□□□□ 0.22
LSM2-208ENST00000375661 UBR2Q8IWV8 1755 aa16.44■□□□□ 0.22
LSM2-208ENST00000375661 CHRNA5P30532 468 aa16.44■□□□□ 0.22
LSM2-208ENST00000375661 USPL1Q5W0Q7 1092 aa16.44■□□□□ 0.22
LSM2-208ENST00000375661 DNAJC10Q8IXB1 793 aa16.44■□□□□ 0.22
LSM2-208ENST00000375661 TIAM2Q8IVF5 1701 aa16.43■□□□□ 0.22
LSM2-208ENST00000375661 RRAGCQ9HB90 399 aa16.43■□□□□ 0.22
LSM2-208ENST00000375661 NARFQ9UHQ1 456 aa16.43■□□□□ 0.22
LSM2-208ENST00000375661 COL15A1P39059 1388 aa16.42■□□□□ 0.22
LSM2-208ENST00000375661 CYP19A1P11511 503 aaPredicted RBP16.42■□□□□ 0.22
LSM2-208ENST00000375661 VSIG10Q8N0Z9 540 aa16.42■□□□□ 0.22
LSM2-208ENST00000375661 SMC1BQ8NDV3 1235 aa16.42■□□□□ 0.22
LSM2-208ENST00000375661 KNSTRNQ9Y448 316 aa16.42■□□□□ 0.22
LSM2-208ENST00000375661 DDX10Q13206 875 aaKnown RBP16.41■□□□□ 0.22
LSM2-208ENST00000375661 AMER1Q5JTC6 1135 aaPredicted RBP16.41■□□□□ 0.22
LSM2-208ENST00000375661 DICER1Q9UPY3 1922 aaKnown RBP16.41■□□□□ 0.22
LSM2-208ENST00000375661 RNMTO43148 476 aaKnown RBP16.4■□□□□ 0.22
LSM2-208ENST00000375661 LMNB1P20700 586 aa16.4■□□□□ 0.22
LSM2-208ENST00000375661 NFIXQ14938 502 aa16.4■□□□□ 0.22
LSM2-208ENST00000375661 LGR6Q9HBX8 967 aa16.39■□□□□ 0.21
LSM2-208ENST00000375661 GLTPD2A6NH11 291 aa16.38■□□□□ 0.21
LSM2-208ENST00000375661 SERPINB2P05120 415 aa16.38■□□□□ 0.21
LSM2-208ENST00000375661 TTLL6Q8N841 843 aa16.38■□□□□ 0.21
LSM2-208ENST00000375661 ANKRD31Q8N7Z5 1873 aa16.37■□□□□ 0.21
LSM2-208ENST00000375661 VEGFAP15692 232 aaPredicted RBP16.37■□□□□ 0.21
LSM2-208ENST00000375661 HTRA3P83110 453 aa16.37■□□□□ 0.21
LSM2-208ENST00000375661 RASSF7Q02833 373 aa16.37■□□□□ 0.21
LSM2-208ENST00000375661 SLC39A6Q13433 755 aa16.37■□□□□ 0.21
LSM2-208ENST00000375661 BCL2L12Q9HB09 334 aa16.37■□□□□ 0.21
LSM2-208ENST00000375661 PDZRN3Q9UPQ7 1066 aa16.37■□□□□ 0.21
LSM2-208ENST00000375661 ZBTB1Q9Y2K1 713 aa16.37■□□□□ 0.21
LSM2-208ENST00000375661 FER1L6Q2WGJ9 1857 aa16.37■□□□□ 0.21
LSM2-208ENST00000375661 SCN7AQ01118 1682 aa16.37■□□□□ 0.21
LSM2-208ENST00000375661 A0A087WZG4 1122 aa16.36■□□□□ 0.21
LSM2-208ENST00000375661 H0YIN7 160 aa16.36■□□□□ 0.21
LSM2-208ENST00000375661 SIPA1L3O60292 1781 aaPredicted RBP16.36■□□□□ 0.21
LSM2-208ENST00000375661 C2CD5Q86YS7 1000 aa16.35■□□□□ 0.21
LSM2-208ENST00000375661 NPC1L1Q9UHC9 1359 aa16.35■□□□□ 0.21
LSM2-208ENST00000375661 STARD3NLO95772 234 aa16.34■□□□□ 0.21
LSM2-208ENST00000375661 MTHFSDQ2M296 383 aaKnown RBP16.34■□□□□ 0.21
LSM2-208ENST00000375661 CC2D1BQ5T0F9 858 aaKnown RBP16.34■□□□□ 0.21
LSM2-208ENST00000375661 ARFGEF2Q9Y6D5 1785 aa16.33■□□□□ 0.21
LSM2-208ENST00000375661 HMOX1P09601 288 aa16.33■□□□□ 0.2
LSM2-208ENST00000375661 EIF5P55010 431 aaKnown RBP16.33■□□□□ 0.2
LSM2-208ENST00000375661 COL13A1Q5TAT6 717 aaPredicted RBP16.33■□□□□ 0.2
LSM2-208ENST00000375661 TTC5Q8N0Z6 440 aa16.33■□□□□ 0.2
LSM2-208ENST00000375661 COL11A2P13942 1736 aaPredicted RBP16.33■□□□□ 0.2
LSM2-208ENST00000375661 NFKBIEO00221 500 aa16.32■□□□□ 0.2
LSM2-208ENST00000375661 DIAPH1O60610 1272 aaKnown RBP16.32■□□□□ 0.2
LSM2-208ENST00000375661 CANXP27824 592 aaKnown RBP16.32■□□□□ 0.2
LSM2-208ENST00000375661 PDE6BP35913 854 aa16.32■□□□□ 0.2
LSM2-208ENST00000375661 PRELPP51888 382 aa16.32■□□□□ 0.2
LSM2-208ENST00000375661 DPY19L2Q6NUT2 758 aa16.32■□□□□ 0.2
LSM2-208ENST00000375661 CARMIL3Q8ND23 1372 aa16.32■□□□□ 0.2
LSM2-208ENST00000375661 TEX13AQ9BXU3 409 aaPredicted RBP16.32■□□□□ 0.2
LSM2-208ENST00000375661 CACNA1SQ13698 1873 aa16.31■□□□□ 0.2
LSM2-208ENST00000375661 CNGB1Q14028 1251 aaPredicted RBP16.31■□□□□ 0.2
LSM2-208ENST00000375661 BRIP1Q9BX63 1249 aa16.31■□□□□ 0.2
LSM2-208ENST00000375661 BCORQ6W2J9 1755 aa16.31■□□□□ 0.2
LSM2-208ENST00000375661 HEG1Q9ULI3 1381 aa16.3■□□□□ 0.2
LSM2-208ENST00000375661 LTBP3Q9NS15 1303 aa16.29■□□□□ 0.2
LSM2-208ENST00000375661 TNS4Q8IZW8 715 aa16.29■□□□□ 0.2
LSM2-208ENST00000375661 POTECB2RU33 542 aa16.28■□□□□ 0.2
LSM2-208ENST00000375661 IL6STP40189 918 aaPredicted RBP16.28■□□□□ 0.2
LSM2-208ENST00000375661 TEFQ10587 303 aa16.28■□□□□ 0.2
LSM2-208ENST00000375661 TBC1D9BQ66K14 1250 aa16.28■□□□□ 0.2
LSM2-208ENST00000375661 ZNF790Q6PG37 636 aa16.28■□□□□ 0.2
LSM2-208ENST00000375661 BICDL1Q6ZP65 573 aa16.28■□□□□ 0.2
LSM2-208ENST00000375661 GAS2L2Q8NHY3 880 aa16.28■□□□□ 0.2
LSM2-208ENST00000375661 ZNF622Q969S3 477 aaKnown RBP eCLIP16.28■□□□□ 0.2
LSM2-208ENST00000375661 SLX4Q8IY92 1834 aa16.27■□□□□ 0.2
LSM2-208ENST00000375661 GNAT3A8MTJ3 354 aa16.27■□□□□ 0.2
LSM2-208ENST00000375661 ERFEQ4G0M1 354 aa16.27■□□□□ 0.2
LSM2-208ENST00000375661 PRR5LQ6MZQ0 368 aa16.27■□□□□ 0.2
LSM2-208ENST00000375661 ZNF496Q96IT1 587 aaPredicted RBP16.27■□□□□ 0.2
LSM2-208ENST00000375661 COL3A1P02461 1466 aaPredicted RBP16.27■□□□□ 0.19
LSM2-208ENST00000375661 SCN4AP35499 1836 aa16.26■□□□□ 0.19
LSM2-208ENST00000375661 SOGA3Q5TF21 947 aa16.26■□□□□ 0.19
LSM2-208ENST00000375661 NPM2Q86SE8 214 aaKnown RBP16.26■□□□□ 0.19
LSM2-208ENST00000375661 CNKSR1Q969H4 720 aa16.26■□□□□ 0.19
LSM2-208ENST00000375661 C21orf2O43822 256 aa16.25■□□□□ 0.19
LSM2-208ENST00000375661 HSPA1AP0DMV8 641 aaKnown RBP16.25■□□□□ 0.19
LSM2-208ENST00000375661 HSPA1BP0DMV9 641 aaKnown RBP16.25■□□□□ 0.19
LSM2-208ENST00000375661 STYK1Q6J9G0 422 aa16.25■□□□□ 0.19
LSM2-208ENST00000375661 FMNL2Q96PY5 1086 aa16.25■□□□□ 0.19
LSM2-208ENST00000375661 SETDB2Q96T68 719 aa16.25■□□□□ 0.19
LSM2-208ENST00000375661 TAOK3Q9H2K8 898 aa16.25■□□□□ 0.19
LSM2-208ENST00000375661 IL17REQ8NFR9 667 aa16.24■□□□□ 0.19
LSM2-208ENST00000375661 CREBZFQ9NS37 354 aa16.24■□□□□ 0.19
LSM2-208ENST00000375661 TBC1D2BQ9UPU7 963 aa16.24■□□□□ 0.19
LSM2-208ENST00000375661 CEMIPQ8WUJ3 1361 aa16.24■□□□□ 0.19
LSM2-208ENST00000375661 SRGNP10124 158 aa16.23■□□□□ 0.19
LSM2-208ENST00000375661 ST5P78524 1137 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 88.9 ms