RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 DNTTIP2Q5QJE6 756 aaKnown RBP25.5■■□□□ 1.67
UPF3A-202ENST00000375299 IL25Q9H293 177 aa25.5■■□□□ 1.67
UPF3A-202ENST00000375299 LETM1O95202 739 aaPredicted RBP25.49■■□□□ 1.67
UPF3A-202ENST00000375299 FKBP5Q13451 457 aaPredicted RBP25.49■■□□□ 1.67
UPF3A-202ENST00000375299 USP31Q70CQ4 1352 aa25.49■■□□□ 1.67
UPF3A-202ENST00000375299 PRIMPOLQ96LW4 560 aa25.48■■□□□ 1.67
UPF3A-202ENST00000375299 CACNA1FO60840 1977 aa25.48■■□□□ 1.67
UPF3A-202ENST00000375299 LRRFIP2Q9Y608 721 aaKnown RBP25.48■■□□□ 1.67
UPF3A-202ENST00000375299 CNPY2Q9Y2B0 182 aa25.47■■□□□ 1.67
UPF3A-202ENST00000375299 ADCY5O95622 1261 aa25.47■■□□□ 1.67
UPF3A-202ENST00000375299 LRRC37A3O60309 1634 aa25.46■■□□□ 1.67
UPF3A-202ENST00000375299 ZSCAN22P10073 491 aaPredicted RBP25.46■■□□□ 1.67
UPF3A-202ENST00000375299 NOLC1Q14978 699 aaKnown RBP eCLIP25.46■■□□□ 1.67
UPF3A-202ENST00000375299 CCDC30Q5VVM6 783 aa25.46■■□□□ 1.67
UPF3A-202ENST00000375299 ZNF830Q96NB3 372 aaPredicted RBP25.46■■□□□ 1.67
UPF3A-202ENST00000375299 PXDNLA1KZ92 1463 aa25.46■■□□□ 1.67
UPF3A-202ENST00000375299 RAD50Q92878 1312 aa25.46■■□□□ 1.67
UPF3A-202ENST00000375299 PRDM4Q9UKN5 801 aa25.46■■□□□ 1.67
UPF3A-202ENST00000375299 PTPRUQ92729 1446 aa25.45■■□□□ 1.67
UPF3A-202ENST00000375299 UBE2HP62256 183 aa25.45■■□□□ 1.66
UPF3A-202ENST00000375299 SMAP1Q8IYB5 467 aaPredicted RBP25.45■■□□□ 1.66
UPF3A-202ENST00000375299 HCLS1P14317 486 aaPredicted RBP25.45■■□□□ 1.66
UPF3A-202ENST00000375299 HMGN5P82970 282 aaKnown RBP25.45■■□□□ 1.66
UPF3A-202ENST00000375299 MPNDQ8N594 471 aa25.45■■□□□ 1.66
UPF3A-202ENST00000375299 SOS1Q07889 1333 aaPredicted RBP25.44■■□□□ 1.66
UPF3A-202ENST00000375299 TTC14Q96N46 770 aa25.44■■□□□ 1.66
UPF3A-202ENST00000375299 ARID3AQ99856 593 aa25.44■■□□□ 1.66
UPF3A-202ENST00000375299 IL1RAPL2Q9NP60 686 aa25.44■■□□□ 1.66
UPF3A-202ENST00000375299 KDRP35968 1356 aa25.43■■□□□ 1.66
UPF3A-202ENST00000375299 SLC26A8Q96RN1 970 aa25.43■■□□□ 1.66
UPF3A-202ENST00000375299 TTC12Q9H892 705 aaPredicted RBP25.43■■□□□ 1.66
UPF3A-202ENST00000375299 SNX14Q9Y5W7 946 aa25.43■■□□□ 1.66
UPF3A-202ENST00000375299 DNAJC5Q9H3Z4 198 aa25.42■■□□□ 1.66
UPF3A-202ENST00000375299 ZBTB7CA1YPR0 619 aa25.42■■□□□ 1.66
UPF3A-202ENST00000375299 SOX12O15370 315 aa25.42■■□□□ 1.66
UPF3A-202ENST00000375299 SGSM2O43147 1006 aa25.42■■□□□ 1.66
UPF3A-202ENST00000375299 STX6O43752 255 aa25.42■■□□□ 1.66
UPF3A-202ENST00000375299 GTF2F1P35269 517 aaKnown RBP eCLIP25.42■■□□□ 1.662e-6■■■■□ 26
UPF3A-202ENST00000375299 NUTM1Q86Y26 1132 aa25.42■■□□□ 1.66
UPF3A-202ENST00000375299 CCDC94Q9BW85 323 aaPredicted RBP25.42■■□□□ 1.66
UPF3A-202ENST00000375299 AK2P54819 239 aa25.41■■□□□ 1.66
UPF3A-202ENST00000375299 SSH3Q8TE77 659 aa25.41■■□□□ 1.66
UPF3A-202ENST00000375299 ZSCAN21Q9Y5A6 473 aaPredicted RBP25.41■■□□□ 1.66
UPF3A-202ENST00000375299 F13A1P00488 732 aa25.41■■□□□ 1.66
UPF3A-202ENST00000375299 KLHL34Q8N239 644 aa25.41■■□□□ 1.66
UPF3A-202ENST00000375299 SPTLC3Q9NUV7 552 aa25.41■■□□□ 1.66
UPF3A-202ENST00000375299 RAB11FIP3O75154 756 aa25.4■■□□□ 1.66
UPF3A-202ENST00000375299 KDM4AO75164 1064 aa25.4■■□□□ 1.66
UPF3A-202ENST00000375299 UBTFL1P0CB47 393 aaPredicted RBP25.4■■□□□ 1.66
UPF3A-202ENST00000375299 SYT1P21579 422 aa25.4■■□□□ 1.66
UPF3A-202ENST00000375299 USP44Q9H0E7 712 aa25.4■■□□□ 1.66
UPF3A-202ENST00000375299 PI4K2BQ8TCG2 481 aa25.4■■□□□ 1.66
UPF3A-202ENST00000375299 LIMCH1Q9UPQ0 1083 aa25.4■■□□□ 1.66
UPF3A-202ENST00000375299 CEP170BQ9Y4F5 1589 aaPredicted RBP25.4■■□□□ 1.66
UPF3A-202ENST00000375299 NECTIN2Q92692 538 aa25.39■■□□□ 1.66
UPF3A-202ENST00000375299 LSG1Q9H089 658 aaKnown RBP25.39■■□□□ 1.66
UPF3A-202ENST00000375299 ATP6V1DQ9Y5K8 247 aa25.39■■□□□ 1.66
UPF3A-202ENST00000375299 FLT4P35916 1363 aa25.39■■□□□ 1.65
UPF3A-202ENST00000375299 MAP4K4O95819 1239 aaPredicted RBP25.39■■□□□ 1.65
UPF3A-202ENST00000375299 FUCA2Q9BTY2 467 aa25.39■■□□□ 1.65
UPF3A-202ENST00000375299 TTC21AQ8NDW8 1320 aa25.38■■□□□ 1.65
UPF3A-202ENST00000375299 SBNO1A3KN83 1393 aa25.38■■□□□ 1.65
UPF3A-202ENST00000375299 HTATSF1O43719 755 aaKnown RBP25.38■■□□□ 1.65
UPF3A-202ENST00000375299 RUFY3Q7L099 469 aa25.38■■□□□ 1.65
UPF3A-202ENST00000375299 SMC3Q9UQE7 1217 aa25.38■■□□□ 1.65
UPF3A-202ENST00000375299 IGSF1Q8N6C5 1336 aa25.37■■□□□ 1.65
UPF3A-202ENST00000375299 FIBPO43427 364 aa25.37■■□□□ 1.65
UPF3A-202ENST00000375299 C17orf53Q8N3J3 647 aaPredicted RBP25.37■■□□□ 1.65
UPF3A-202ENST00000375299 AMOTL2Q9Y2J4 779 aa25.37■■□□□ 1.65
UPF3A-202ENST00000375299 TPRNQ4KMQ1 711 aa25.37■■□□□ 1.65
UPF3A-202ENST00000375299 JARID2Q92833 1246 aaPredicted RBP25.37■■□□□ 1.65
UPF3A-202ENST00000375299 CRYBG1Q9Y4K1 1723 aa25.36■■□□□ 1.65
UPF3A-202ENST00000375299 CEBPAP49715 358 aaPredicted RBP25.36■■□□□ 1.65
UPF3A-202ENST00000375299 RASEFQ8IZ41 740 aa25.36■■□□□ 1.65
UPF3A-202ENST00000375299 CNTROBQ8N137 903 aa25.36■■□□□ 1.65
UPF3A-202ENST00000375299 ZNF710Q8N1W2 664 aa25.36■■□□□ 1.65
UPF3A-202ENST00000375299 EID1Q9Y6B2 187 aa25.36■■□□□ 1.65
UPF3A-202ENST00000375299 SURF6O75683 361 aaKnown RBP25.36■■□□□ 1.65
UPF3A-202ENST00000375299 RHPN1Q8TCX5 695 aa25.36■■□□□ 1.65
UPF3A-202ENST00000375299 POLA2Q14181 598 aa25.35■■□□□ 1.65
UPF3A-202ENST00000375299 EYA1Q99502 592 aa25.35■■□□□ 1.65
UPF3A-202ENST00000375299 PPP1R42Q7Z4L9 355 aa25.34■■□□□ 1.65
UPF3A-202ENST00000375299 LARP6Q9BRS8 491 aaKnown RBP25.34■■□□□ 1.65
UPF3A-202ENST00000375299 GIMAP6Q6P9H5 292 aa25.33■■□□□ 1.65
UPF3A-202ENST00000375299 TSC1Q92574 1164 aa25.33■■□□□ 1.65
UPF3A-202ENST00000375299 GNAT3A8MTJ3 354 aa25.32■■□□□ 1.64
UPF3A-202ENST00000375299 KIF1BPQ96EK5 621 aa25.32■■□□□ 1.64
UPF3A-202ENST00000375299 KIF3AQ9Y496 699 aa25.32■■□□□ 1.64
UPF3A-202ENST00000375299 SLIT1O75093 1534 aa25.31■■□□□ 1.64
UPF3A-202ENST00000375299 LARGE1O95461 756 aa25.31■■□□□ 1.64
UPF3A-202ENST00000375299 TBX22Q9Y458 520 aa25.31■■□□□ 1.64
UPF3A-202ENST00000375299 TPM3P06753 285 aa25.31■■□□□ 1.64
UPF3A-202ENST00000375299 NGDNQ8NEJ9 315 aaKnown RBP25.31■■□□□ 1.64
UPF3A-202ENST00000375299 MTMR6Q9Y217 621 aa25.31■■□□□ 1.64
UPF3A-202ENST00000375299 DIP2AQ14689 1571 aa25.31■■□□□ 1.64
UPF3A-202ENST00000375299 ARHGAP23Q9P227 1491 aa25.3■■□□□ 1.64
UPF3A-202ENST00000375299 RGPD8O14715 1765 aaPredicted RBP25.3■■□□□ 1.64
UPF3A-202ENST00000375299 MAP3K5Q99683 1374 aa25.3■■□□□ 1.64
UPF3A-202ENST00000375299 AP5Z1O43299 807 aa25.3■■□□□ 1.64
UPF3A-202ENST00000375299 CASTP20810 708 aaKnown RBP25.3■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms