RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 FMNL2Q96PY5 1086 aa28.89■■■□□ 2.22
CCDC28B-201ENST00000373602 PXDNLA1KZ92 1463 aa28.89■■■□□ 2.22
CCDC28B-201ENST00000373602 RALBP1Q15311 655 aa28.88■■■□□ 2.21
CCDC28B-201ENST00000373602 USPL1Q5W0Q7 1092 aa28.88■■■□□ 2.21
CCDC28B-201ENST00000373602 MCM10Q7L590 875 aa28.88■■■□□ 2.21
CCDC28B-201ENST00000373602 NARFQ9UHQ1 456 aa28.88■■■□□ 2.21
CCDC28B-201ENST00000373602 KIAA1551Q9HCM1 1747 aa28.88■■■□□ 2.21
CCDC28B-201ENST00000373602 KCNQ3O43525 872 aa28.87■■■□□ 2.21
CCDC28B-201ENST00000373602 CANXP27824 592 aaKnown RBP28.87■■■□□ 2.21
CCDC28B-201ENST00000373602 DDR1Q08345 913 aa28.87■■■□□ 2.21
CCDC28B-201ENST00000373602 DDX10Q13206 875 aaKnown RBP28.87■■■□□ 2.21
CCDC28B-201ENST00000373602 WWC3Q9ULE0 1092 aa28.87■■■□□ 2.21
CCDC28B-201ENST00000373602 TM4SF1P30408 202 aa28.86■■■□□ 2.21
CCDC28B-201ENST00000373602 EIF5P55010 431 aaKnown RBP28.85■■■□□ 2.21
CCDC28B-201ENST00000373602 NEFMP07197 916 aa28.84■■■□□ 2.21
CCDC28B-201ENST00000373602 DCTN1Q14203 1278 aa28.84■■■□□ 2.21
CCDC28B-201ENST00000373602 PLEKHF1Q96S99 279 aa28.84■■■□□ 2.21
CCDC28B-201ENST00000373602 GOLGB1Q14789 3259 aaKnown RBP28.84■■■□□ 2.21
CCDC28B-201ENST00000373602 A0A0G2JLW4 131 aa28.83■■■□□ 2.21
CCDC28B-201ENST00000373602 POLRMTO00411 1230 aaKnown RBP28.83■■■□□ 2.21
CCDC28B-201ENST00000373602 N4BP2Q86UW6 1770 aaPredicted RBP28.83■■■□□ 2.21
CCDC28B-201ENST00000373602 DPEP1P16444 411 aa28.82■■■□□ 2.2
CCDC28B-201ENST00000373602 BCL2L12Q9HB09 334 aa28.82■■■□□ 2.2
CCDC28B-201ENST00000373602 A0A087WZG4 1122 aa28.81■■■□□ 2.2
CCDC28B-201ENST00000373602 NFIXQ14938 502 aa28.8■■■□□ 2.2
CCDC28B-201ENST00000373602 PNNQ9H307 717 aaKnown RBP28.79■■■□□ 2.2
CCDC28B-201ENST00000373602 IL6STP40189 918 aaPredicted RBP28.78■■■□□ 2.2
CCDC28B-201ENST00000373602 A1BGP04217 495 aa28.77■■■□□ 2.2
CCDC28B-201ENST00000373602 TAF7Q15545 349 aaPredicted RBP28.77■■■□□ 2.2
CCDC28B-201ENST00000373602 NFE2L2Q16236 605 aa28.77■■■□□ 2.2
CCDC28B-201ENST00000373602 KCNA3P22001 575 aa28.76■■■□□ 2.19
CCDC28B-201ENST00000373602 BCS1LQ9Y276 419 aa28.76■■■□□ 2.19
CCDC28B-201ENST00000373602 USP16Q9Y5T5 823 aa28.76■■■□□ 2.19
CCDC28B-201ENST00000373602 DLG5Q8TDM6 1919 aa28.76■■■□□ 2.19
CCDC28B-201ENST00000373602 SNRPA1P09661 255 aaKnown RBP28.75■■■□□ 2.19
CCDC28B-201ENST00000373602 MYBBP1AQ9BQG0 1328 aaKnown RBP28.74■■■□□ 2.19
CCDC28B-201ENST00000373602 ZNF330Q9Y3S2 320 aaPredicted RBP28.74■■■□□ 2.19
CCDC28B-201ENST00000373602 BRCA1P38398 1863 aaKnown RBP28.74■■■□□ 2.19
CCDC28B-201ENST00000373602 MAPK8IP3Q9UPT6 1336 aa28.73■■■□□ 2.19
CCDC28B-201ENST00000373602 PRAMEF22A3QJZ6 481 aa28.73■■■□□ 2.19
CCDC28B-201ENST00000373602 NRXN2Q9P2S2 1712 aa28.72■■■□□ 2.19
CCDC28B-201ENST00000373602 SERPINB2P05120 415 aa28.72■■■□□ 2.19
CCDC28B-201ENST00000373602 PIM2Q9P1W9 311 aa28.72■■■□□ 2.19
CCDC28B-201ENST00000373602 TBC1D2BQ9UPU7 963 aa28.72■■■□□ 2.19
CCDC28B-201ENST00000373602 AFDNP55196 1824 aaKnown RBP28.71■■■□□ 2.19
CCDC28B-201ENST00000373602 MIS18AQ9NYP9 233 aa28.71■■■□□ 2.19
CCDC28B-201ENST00000373602 ADCY9O60503 1353 aa28.71■■■□□ 2.19
CCDC28B-201ENST00000373602 SCN7AQ01118 1682 aa28.7■■■□□ 2.19
CCDC28B-201ENST00000373602 NPM2Q86SE8 214 aaKnown RBP28.7■■■□□ 2.18
CCDC28B-201ENST00000373602 PNISRQ8TF01 805 aaKnown RBP28.7■■■□□ 2.18
CCDC28B-201ENST00000373602 ATP10DQ9P241 1426 aa28.69■■■□□ 2.18
CCDC28B-201ENST00000373602 CHRNA5P30532 468 aa28.69■■■□□ 2.18
CCDC28B-201ENST00000373602 TBC1D9BQ66K14 1250 aa28.68■■■□□ 2.18
CCDC28B-201ENST00000373602 BICDL1Q6ZP65 573 aa28.68■■■□□ 2.18
CCDC28B-201ENST00000373602 CAMTA2O94983 1202 aa28.67■■■□□ 2.18
CCDC28B-201ENST00000373602 THUMPD2Q9BTF0 503 aaKnown RBP28.67■■■□□ 2.18
CCDC28B-201ENST00000373602 PIP4K2AP48426 406 aaPredicted RBP28.66■■■□□ 2.18
CCDC28B-201ENST00000373602 DALRD3Q5D0E6 543 aaKnown RBP28.66■■■□□ 2.18
CCDC28B-201ENST00000373602 KDM3BQ7LBC6 1761 aa28.65■■■□□ 2.18
CCDC28B-201ENST00000373602 ARFGEF1Q9Y6D6 1849 aa28.65■■■□□ 2.18
CCDC28B-201ENST00000373602 ARHGAP27Q6ZUM4 889 aa28.65■■■□□ 2.18
CCDC28B-201ENST00000373602 DZIP3Q86Y13 1208 aaKnown RBP28.65■■■□□ 2.18
CCDC28B-201ENST00000373602 NBPF26B4DH59 902 aa28.63■■■□□ 2.17
CCDC28B-201ENST00000373602 GIGYF1O75420 1035 aaPredicted RBP28.63■■■□□ 2.17
CCDC28B-201ENST00000373602 NBPF10Q6P3W6 841 aaKnown RBP28.63■■■□□ 2.17
CCDC28B-201ENST00000373602 NBPF15Q8N660 670 aa28.63■■■□□ 2.17
CCDC28B-201ENST00000373602 RIPK4P57078 832 aa28.62■■■□□ 2.17
CCDC28B-201ENST00000373602 EIF4A1P60842 406 aaKnown RBP28.62■■■□□ 2.17
CCDC28B-201ENST00000373602 BCORQ6W2J9 1755 aa28.62■■■□□ 2.17
CCDC28B-201ENST00000373602 CARMIL3Q8ND23 1372 aa28.62■■■□□ 2.17
CCDC28B-201ENST00000373602 C1QTNF8P60827 252 aa28.61■■■□□ 2.17
CCDC28B-201ENST00000373602 PRKRIP1Q9H875 184 aaPredicted RBP28.61■■■□□ 2.17
CCDC28B-201ENST00000373602 TMPOP42166 694 aaKnown RBP28.6■■■□□ 2.17
CCDC28B-201ENST00000373602 SETDB2Q96T68 719 aa28.6■■■□□ 2.17
CCDC28B-201ENST00000373602 LAMB4A4D0S4 1761 aa28.6■■■□□ 2.17
CCDC28B-201ENST00000373602 CLEC4GQ6UXB4 293 aa28.59■■■□□ 2.17
CCDC28B-201ENST00000373602 GPBP1L1Q9HC44 474 aaPredicted RBP28.59■■■□□ 2.17
CCDC28B-201ENST00000373602 PRR5LQ6MZQ0 368 aa28.58■■■□□ 2.17
CCDC28B-201ENST00000373602 C2CD5Q86YS7 1000 aa28.58■■■□□ 2.17
CCDC28B-201ENST00000373602 ZEB1P37275 1124 aaPredicted RBP28.57■■■□□ 2.16
CCDC28B-201ENST00000373602 DLEC1Q9Y238 1755 aa28.57■■■□□ 2.16
CCDC28B-201ENST00000373602 H0YIN7 160 aa28.56■■■□□ 2.16
CCDC28B-201ENST00000373602 RGL2O15211 777 aa28.56■■■□□ 2.16
CCDC28B-201ENST00000373602 LMOD3Q0VAK6 560 aa28.56■■■□□ 2.16
CCDC28B-201ENST00000373602 WDR43Q15061 677 aaKnown RBP eCLIP28.56■■■□□ 2.16
CCDC28B-201ENST00000373602 CCDC146Q8IYE0 955 aa28.56■■■□□ 2.16
CCDC28B-201ENST00000373602 BRIP1Q9BX63 1249 aa28.56■■■□□ 2.16
CCDC28B-201ENST00000373602 ZNF652Q9Y2D9 606 aa28.56■■■□□ 2.16
CCDC28B-201ENST00000373602 ZNF526Q8TF50 670 aaPredicted RBP28.55■■■□□ 2.16
CCDC28B-201ENST00000373602 PDZRN3Q9UPQ7 1066 aa28.55■■■□□ 2.16
CCDC28B-201ENST00000373602 TTLL6Q8N841 843 aa28.54■■■□□ 2.16
CCDC28B-201ENST00000373602 CNBD1Q8NA66 436 aa28.54■■■□□ 2.16
CCDC28B-201ENST00000373602 RUNDC1Q96C34 613 aa28.54■■■□□ 2.16
CCDC28B-201ENST00000373602 BABAM1Q9NWV8 329 aa28.54■■■□□ 2.16
CCDC28B-201ENST00000373602 TSPYL4Q9UJ04 414 aa28.54■■■□□ 2.16
CCDC28B-201ENST00000373602 ANKRD31Q8N7Z5 1873 aa28.54■■■□□ 2.16
CCDC28B-201ENST00000373602 PDE6BP35913 854 aa28.53■■■□□ 2.16
CCDC28B-201ENST00000373602 CCDC24Q8N4L8 307 aa28.53■■■□□ 2.16
CCDC28B-201ENST00000373602 ADAMTS8Q9UP79 889 aa28.53■■■□□ 2.16
CCDC28B-201ENST00000373602 RRP7AQ9Y3A4 280 aaKnown RBP28.53■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms