RNA–Protein interactions for RNA: ENST00000372056.8

LDB3-203, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,868 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-203ENST00000372056 C8orf34Q49A92 452 aa16.33■□□□□ 0.2
LDB3-203ENST00000372056 ATRNO75882 1429 aa16.32■□□□□ 0.2
LDB3-203ENST00000372056 SMC5Q8IY18 1101 aa16.32■□□□□ 0.2
LDB3-203ENST00000372056 HMGB2P26583 209 aaKnown RBP16.31■□□□□ 0.2
LDB3-203ENST00000372056 ANP32AP39687 249 aaKnown RBP16.31■□□□□ 0.2
LDB3-203ENST00000372056 HYPKQ9NX55 129 aa16.31■□□□□ 0.2
LDB3-203ENST00000372056 MSH5O43196 834 aa16.31■□□□□ 0.2
LDB3-203ENST00000372056 BCL9O00512 1426 aa16.3■□□□□ 0.2
LDB3-203ENST00000372056 FAM98CQ17RN3 349 aaKnown RBP16.29■□□□□ 0.2
LDB3-203ENST00000372056 G2E3Q7L622 706 aa16.29■□□□□ 0.2
LDB3-203ENST00000372056 SMARCC1Q92922 1105 aaPredicted RBP16.29■□□□□ 0.2
LDB3-203ENST00000372056 DDX58O95786 925 aaKnown RBP16.28■□□□□ 0.2
LDB3-203ENST00000372056 C1orf115Q9H7X2 142 aa16.28■□□□□ 0.2
LDB3-203ENST00000372056 QTRT2Q9H974 415 aaKnown RBP16.28■□□□□ 0.2
LDB3-203ENST00000372056 DDX21Q9NR30 783 aaKnown RBP eCLIP16.28■□□□□ 0.2
LDB3-203ENST00000372056 PAPPAQ13219 1627 aa16.28■□□□□ 0.2
LDB3-203ENST00000372056 CCT4P50991 539 aaKnown RBP16.27■□□□□ 0.2
LDB3-203ENST00000372056 ZNF496Q96IT1 587 aaPredicted RBP16.27■□□□□ 0.2
LDB3-203ENST00000372056 THSD7AQ9UPZ6 1657 aa16.27■□□□□ 0.19
LDB3-203ENST00000372056 KCNQ3O43525 872 aa16.27■□□□□ 0.19
LDB3-203ENST00000372056 EIF2S2P20042 333 aaKnown RBP16.27■□□□□ 0.19
LDB3-203ENST00000372056 FLIIQ13045 1269 aa16.27■□□□□ 0.19
LDB3-203ENST00000372056 UBR2Q8IWV8 1755 aa16.27■□□□□ 0.19
LDB3-203ENST00000372056 SLC39A6Q13433 755 aa16.26■□□□□ 0.19
LDB3-203ENST00000372056 SIRT2Q8IXJ6 389 aa16.26■□□□□ 0.19
LDB3-203ENST00000372056 MARCH10Q8NA82 808 aaPredicted RBP16.26■□□□□ 0.19
LDB3-203ENST00000372056 HDAC5Q9UQL6 1122 aa16.26■□□□□ 0.19
LDB3-203ENST00000372056 PIGBQ92521 554 aa16.25■□□□□ 0.19
LDB3-203ENST00000372056 ITGB4P16144 1822 aa16.25■□□□□ 0.19
LDB3-203ENST00000372056 PXDNLA1KZ92 1463 aa16.25■□□□□ 0.19
LDB3-203ENST00000372056 A0A0G2JS52 829 aa16.25■□□□□ 0.19
LDB3-203ENST00000372056 STARD3NLO95772 234 aa16.25■□□□□ 0.19
LDB3-203ENST00000372056 NUCB1Q02818 461 aa16.25■□□□□ 0.19
LDB3-203ENST00000372056 FKBP5Q13451 457 aaPredicted RBP16.24■□□□□ 0.19
LDB3-203ENST00000372056 NPM2Q86SE8 214 aaKnown RBP16.24■□□□□ 0.19
LDB3-203ENST00000372056 NECTIN2Q92692 538 aa16.24■□□□□ 0.19
LDB3-203ENST00000372056 GCC1Q96CN9 775 aa16.24■□□□□ 0.19
LDB3-203ENST00000372056 IPO9Q96P70 1041 aaKnown RBP16.24■□□□□ 0.19
LDB3-203ENST00000372056 IBTKQ9P2D0 1353 aaPredicted RBP16.24■□□□□ 0.19
LDB3-203ENST00000372056 TOGARAM1Q9Y4F4 1720 aa16.23■□□□□ 0.19
LDB3-203ENST00000372056 ATP10DQ9P241 1426 aa16.23■□□□□ 0.19
LDB3-203ENST00000372056 F6X3S4 739 aa16.23■□□□□ 0.19
LDB3-203ENST00000372056 PRIM1P49642 420 aaKnown RBP16.23■□□□□ 0.19
LDB3-203ENST00000372056 RBM6P78332 1123 aaKnown RBP16.23■□□□□ 0.19
LDB3-203ENST00000372056 LAMB4A4D0S4 1761 aa16.23■□□□□ 0.19
LDB3-203ENST00000372056 GLI3P10071 1580 aa16.23■□□□□ 0.19
LDB3-203ENST00000372056 ATG3Q9NT62 314 aa16.22■□□□□ 0.19
LDB3-203ENST00000372056 CHPF2Q9P2E5 772 aa16.22■□□□□ 0.19
LDB3-203ENST00000372056 KCPQ6ZWJ8 1503 aa16.22■□□□□ 0.19
LDB3-203ENST00000372056 CHD1LQ86WJ1 897 aa16.21■□□□□ 0.19
LDB3-203ENST00000372056 SYTL4Q96C24 671 aaPredicted RBP16.21■□□□□ 0.19
LDB3-203ENST00000372056 MEIS3Q99687 375 aa16.21■□□□□ 0.19
LDB3-203ENST00000372056 SLC4A10Q6U841 1118 aa16.2■□□□□ 0.18
LDB3-203ENST00000372056 ANKRD44Q8N8A2 993 aa16.2■□□□□ 0.18
LDB3-203ENST00000372056 DOT1LQ8TEK3 1739 aa16.2■□□□□ 0.18
LDB3-203ENST00000372056 KSR2Q6VAB6 950 aa16.2■□□□□ 0.18
LDB3-203ENST00000372056 SEPT12Q8IYM1 358 aa16.2■□□□□ 0.18
LDB3-203ENST00000372056 GNAI3P08754 354 aa16.19■□□□□ 0.18
LDB3-203ENST00000372056 CEP85Q6P2H3 762 aa16.19■□□□□ 0.18
LDB3-203ENST00000372056 RPAP2Q8IXW5 612 aaPredicted RBP16.19■□□□□ 0.18
LDB3-203ENST00000372056 N4BP2Q86UW6 1770 aaPredicted RBP16.19■□□□□ 0.18
LDB3-203ENST00000372056 ZNF831Q5JPB2 1677 aa16.19■□□□□ 0.18
LDB3-203ENST00000372056 PTCD1O75127 700 aaKnown RBP16.18■□□□□ 0.18
LDB3-203ENST00000372056 LNPKQ9C0E8 428 aa16.18■□□□□ 0.18
LDB3-203ENST00000372056 ASAP1Q9ULH1 1129 aa16.18■□□□□ 0.18
LDB3-203ENST00000372056 USP16Q9Y5T5 823 aa16.18■□□□□ 0.18
LDB3-203ENST00000372056 ALDH1L1O75891 902 aa16.18■□□□□ 0.18
LDB3-203ENST00000372056 FAM196AQ6ZSG2 479 aa16.18■□□□□ 0.18
LDB3-203ENST00000372056 DNAAF4Q8WXU2 420 aa16.18■□□□□ 0.18
LDB3-203ENST00000372056 CICQ96RK0 1608 aaPredicted RBP16.17■□□□□ 0.18
LDB3-203ENST00000372056 NEXNQ0ZGT2 675 aa16.17■□□□□ 0.18
LDB3-203ENST00000372056 PDIA6Q15084 440 aa16.17■□□□□ 0.18
LDB3-203ENST00000372056 ANKRD45Q5TZF3 282 aa16.17■□□□□ 0.18
LDB3-203ENST00000372056 DCTPP1Q9H773 170 aa16.17■□□□□ 0.18
LDB3-203ENST00000372056 PHAXQ9H814 394 aaKnown RBP16.17■□□□□ 0.18
LDB3-203ENST00000372056 NOP58Q9Y2X3 529 aaKnown RBP16.17■□□□□ 0.18
LDB3-203ENST00000372056 RBM42Q9BTD8 480 aaKnown RBP16.16■□□□□ 0.18
LDB3-203ENST00000372056 SRCIN1Q9C0H9 1055 aa16.16■□□□□ 0.18
LDB3-203ENST00000372056 BCL11AQ9H165 835 aa16.16■□□□□ 0.18
LDB3-203ENST00000372056 C5P01031 1676 aa16.16■□□□□ 0.18
LDB3-203ENST00000372056 KAT6BQ8WYB5 2073 aa16.15■□□□□ 0.18
LDB3-203ENST00000372056 ANKRD13DQ6ZTN6 518 aa16.15■□□□□ 0.18
LDB3-203ENST00000372056 PI4KAP2A4QPH2 592 aa16.14■□□□□ 0.17
LDB3-203ENST00000372056 SEC24BO95487 1268 aa16.14■□□□□ 0.17
LDB3-203ENST00000372056 RXRBP28702 533 aa16.14■□□□□ 0.17
LDB3-203ENST00000372056 KRT27Q7Z3Y8 459 aa16.14■□□□□ 0.17
LDB3-203ENST00000372056 PI4KAP1Q8N8J0 262 aa16.14■□□□□ 0.17
LDB3-203ENST00000372056 LINS1Q8NG48 757 aa16.14■□□□□ 0.17
LDB3-203ENST00000372056 PLBD2Q8NHP8 589 aa16.14■□□□□ 0.17
LDB3-203ENST00000372056 NHSQ6T4R5 1651 aa16.14■□□□□ 0.17
LDB3-203ENST00000372056 GNAI2P04899 355 aa16.14■□□□□ 0.17
LDB3-203ENST00000372056 RIC3Q7Z5B4 369 aa16.14■□□□□ 0.17
LDB3-203ENST00000372056 BCL11BQ9C0K0 894 aaPredicted RBP16.14■□□□□ 0.17
LDB3-203ENST00000372056 LOC102724428A0A0B4J2F2 783 aa16.13■□□□□ 0.17
LDB3-203ENST00000372056 PRAMEF22A3QJZ6 481 aa16.13■□□□□ 0.17
LDB3-203ENST00000372056 SIK1P57059 783 aa16.13■□□□□ 0.17
LDB3-203ENST00000372056 COPS6Q7L5N1 327 aa16.13■□□□□ 0.17
LDB3-203ENST00000372056 ACSBG1Q96GR2 724 aa16.13■□□□□ 0.17
LDB3-203ENST00000372056 ZBTB47Q9UFB7 747 aaPredicted RBP16.13■□□□□ 0.17
LDB3-203ENST00000372056 PALLDQ8WX93 1383 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms