RNA–Protein interactions for RNA: ENST00000366290.2

YBX3-204, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 512 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-204ENST00000366290 FSHRP23945 695 aa12.19□□□□□ -0.46
YBX3-204ENST00000366290 LARP1Q6PKG0 1096 aaKnown RBP12.19□□□□□ -0.46
YBX3-204ENST00000366290 TRIM50Q86XT4 487 aa12.19□□□□□ -0.46
YBX3-204ENST00000366290 SIGLEC1Q9BZZ2 1709 aa12.19□□□□□ -0.46
YBX3-204ENST00000366290 SCAPERQ9BY12 1400 aa12.19□□□□□ -0.46
YBX3-204ENST00000366290 MADDQ8WXG6 1647 aa12.19□□□□□ -0.46
YBX3-204ENST00000366290 ARHGAP5Q13017 1502 aa12.18□□□□□ -0.46
YBX3-204ENST00000366290 GRM5P41594 1212 aa12.18□□□□□ -0.46
YBX3-204ENST00000366290 ZMIZ1Q9ULJ6 1067 aa12.18□□□□□ -0.46
YBX3-204ENST00000366290 NOVA2Q9UNW9 492 aaKnown RBP12.18□□□□□ -0.46
YBX3-204ENST00000366290 LMTK3Q96Q04 1460 aa12.17□□□□□ -0.46
YBX3-204ENST00000366290 ERVH48-1M5A8F1 160 aa12.17□□□□□ -0.46
YBX3-204ENST00000366290 PTK7Q13308 1070 aa12.17□□□□□ -0.46
YBX3-204ENST00000366290 OGFOD1Q8N543 542 aa12.17□□□□□ -0.46
YBX3-204ENST00000366290 SIRT1Q96EB6 747 aa12.17□□□□□ -0.46
YBX3-204ENST00000366290 VPS8Q8N3P4 1428 aa12.17□□□□□ -0.46
YBX3-204ENST00000366290 KDM5CP41229 1560 aa12.17□□□□□ -0.46
YBX3-204ENST00000366290 ZNF518AQ6AHZ1 1483 aa12.16□□□□□ -0.46
YBX3-204ENST00000366290 ADH1CP00326 375 aa12.16□□□□□ -0.46
YBX3-204ENST00000366290 ATP1A2P50993 1020 aa12.16□□□□□ -0.46
YBX3-204ENST00000366290 CLDN10P78369 228 aa12.16□□□□□ -0.46
YBX3-204ENST00000366290 USP4Q13107 963 aa12.16□□□□□ -0.46
YBX3-204ENST00000366290 EHBP1L1Q8N3D4 1523 aa12.16□□□□□ -0.46
YBX3-204ENST00000366290 GPATCH8Q9UKJ3 1502 aaKnown RBP12.16□□□□□ -0.46
YBX3-204ENST00000366290 CARNS1A5YM72 827 aa12.15□□□□□ -0.46
YBX3-204ENST00000366290 GTF2IP78347 998 aa12.15□□□□□ -0.46
YBX3-204ENST00000366290 FBXO41Q8TF61 875 aa12.15□□□□□ -0.46
YBX3-204ENST00000366290 ZNF594Q96JF6 807 aaPredicted RBP12.15□□□□□ -0.46
YBX3-204ENST00000366290 DNAAF2Q9NVR5 837 aaKnown RBP12.15□□□□□ -0.46
YBX3-204ENST00000366290 WASF2Q9Y6W5 498 aa12.15□□□□□ -0.46
YBX3-204ENST00000366290 ABCC1P33527 1531 aa12.15□□□□□ -0.46
YBX3-204ENST00000366290 YEATS2Q9ULM3 1422 aa12.14□□□□□ -0.47
YBX3-204ENST00000366290 TMEM88BA6NKF7 163 aa12.14□□□□□ -0.47
YBX3-204ENST00000366290 STK32AQ8WU08 396 aa12.14□□□□□ -0.47
YBX3-204ENST00000366290 MAP3K1Q13233 1512 aa12.14□□□□□ -0.47
YBX3-204ENST00000366290 ZFYVE16Q7Z3T8 1539 aa12.14□□□□□ -0.47
YBX3-204ENST00000366290 MTUS2Q5JR59 1369 aa12.14□□□□□ -0.47
YBX3-204ENST00000366290 ARID4BQ4LE39 1312 aaPredicted RBP12.13□□□□□ -0.47
YBX3-204ENST00000366290 SCTRP47872 440 aa12.13□□□□□ -0.47
YBX3-204ENST00000366290 DHX9Q08211 1270 aaKnown RBP12.13□□□□□ -0.47
YBX3-204ENST00000366290 NR5A1Q13285 461 aa12.13□□□□□ -0.47
YBX3-204ENST00000366290 TMEM164Q5U3C3 297 aa12.13□□□□□ -0.47
YBX3-204ENST00000366290 TIAM1Q13009 1591 aa12.13□□□□□ -0.47
YBX3-204ENST00000366290 ITSN2Q9NZM3 1697 aa12.13□□□□□ -0.47
YBX3-204ENST00000366290 ARHGEF12Q9NZN5 1544 aa12.12□□□□□ -0.47
YBX3-204ENST00000366290 MYCP01106 439 aaPredicted RBP12.12□□□□□ -0.47
YBX3-204ENST00000366290 ANKMY2Q8IV38 441 aa12.12□□□□□ -0.47
YBX3-204ENST00000366290 CCDC116Q8IYX3 515 aa12.12□□□□□ -0.47
YBX3-204ENST00000366290 LARGE2Q8N3Y3 721 aa12.12□□□□□ -0.47
YBX3-204ENST00000366290 TMPRSS4Q9NRS4 437 aa12.12□□□□□ -0.47
YBX3-204ENST00000366290 GMPR2Q9P2T1 348 aaKnown RBP12.12□□□□□ -0.47
YBX3-204ENST00000366290 KIAA1024Q9UPX6 916 aa12.12□□□□□ -0.47
YBX3-204ENST00000366290 PCDHGA11Q9Y5H2 935 aa12.12□□□□□ -0.47
YBX3-204ENST00000366290 MLH3Q9UHC1 1453 aa12.12□□□□□ -0.47
YBX3-204ENST00000366290 RIMS1Q86UR5 1692 aaKnown RBP12.12□□□□□ -0.47
YBX3-204ENST00000366290 SAMD9LQ8IVG5 1584 aa12.11□□□□□ -0.47
YBX3-204ENST00000366290 ZBTB7BO15156 539 aaPredicted RBP12.11□□□□□ -0.47
YBX3-204ENST00000366290 DPYDQ12882 1025 aa12.11□□□□□ -0.47
YBX3-204ENST00000366290 TRIM26Q12899 539 aaPredicted RBP12.11□□□□□ -0.47
YBX3-204ENST00000366290 FAM200AQ8TCP9 573 aa12.11□□□□□ -0.47
YBX3-204ENST00000366290 ATP13A2Q9NQ11 1180 aa12.11□□□□□ -0.47
YBX3-204ENST00000366290 KIAA1107Q9UPP5 1409 aa12.11□□□□□ -0.47
YBX3-204ENST00000366290 ATP10AO60312 1499 aa12.1□□□□□ -0.47
YBX3-204ENST00000366290 CCNB3Q8WWL7 1395 aa12.1□□□□□ -0.47
YBX3-204ENST00000366290 NR3C2P08235 984 aa12.1□□□□□ -0.47
YBX3-204ENST00000366290 HSPA2P54652 639 aa12.1□□□□□ -0.47
YBX3-204ENST00000366290 ERVK-9P63128 1117 aa12.1□□□□□ -0.47
YBX3-204ENST00000366290 NNTQ13423 1086 aa12.1□□□□□ -0.47
YBX3-204ENST00000366290 REREQ9P2R6 1566 aa12.09□□□□□ -0.47
YBX3-204ENST00000366290 PLEKHH2Q8IVE3 1493 aa12.09□□□□□ -0.47
YBX3-204ENST00000366290 PSME1Q06323 249 aa12.09□□□□□ -0.47
YBX3-204ENST00000366290 PPP1R26Q5T8A7 1209 aaPredicted RBP12.09□□□□□ -0.47
YBX3-204ENST00000366290 CC2D2BQ6DHV5 1058 aa12.09□□□□□ -0.47
YBX3-204ENST00000366290 SIX5Q8N196 739 aa12.09□□□□□ -0.47
YBX3-204ENST00000366290 AFAP1Q8N556 730 aa12.09□□□□□ -0.47
YBX3-204ENST00000366290 ZNF784Q8NCA9 323 aaPredicted RBP12.09□□□□□ -0.47
YBX3-204ENST00000366290 CYLDQ9NQC7 956 aa12.09□□□□□ -0.47
YBX3-204ENST00000366290 TRAPPC8Q9Y2L5 1435 aa12.09□□□□□ -0.47
YBX3-204ENST00000366290 SUPT6HQ7KZ85 1726 aaKnown RBP12.08□□□□□ -0.47
YBX3-204ENST00000366290 LRRC9Q6ZRR7 1453 aa12.08□□□□□ -0.47
YBX3-204ENST00000366290 DKK1O94907 266 aa12.08□□□□□ -0.48
YBX3-204ENST00000366290 CCDC102BQ68D86 513 aa12.08□□□□□ -0.48
YBX3-204ENST00000366290 KCTD17Q8N5Z5 321 aa12.08□□□□□ -0.48
YBX3-204ENST00000366290 TPCN2Q8NHX9 752 aa12.08□□□□□ -0.48
YBX3-204ENST00000366290 ESF1Q9H501 851 aaKnown RBP12.08□□□□□ -0.48
YBX3-204ENST00000366290 C9orf84Q5VXU9 1444 aa12.07□□□□□ -0.48
YBX3-204ENST00000366290 AEBP1Q8IUX7 1158 aa12.07□□□□□ -0.48
YBX3-204ENST00000366290 TRIM52Q96A61 297 aa12.07□□□□□ -0.48
YBX3-204ENST00000366290 CFDP1Q9UEE9 299 aaPredicted RBP12.07□□□□□ -0.48
YBX3-204ENST00000366290 DIP2CQ9Y2E4 1556 aa12.07□□□□□ -0.48
YBX3-204ENST00000366290 KIDINS220Q9ULH0 1771 aa12.07□□□□□ -0.48
YBX3-204ENST00000366290 NCOA2Q15596 1464 aa12.07□□□□□ -0.48
YBX3-204ENST00000366290 SYCP2Q9BX26 1530 aa12.06□□□□□ -0.48
YBX3-204ENST00000366290 KLF16Q9BXK1 252 aaPredicted RBP12.06□□□□□ -0.48
YBX3-204ENST00000366290 OSBPL3Q9H4L5 887 aa12.06□□□□□ -0.48
YBX3-204ENST00000366290 RBM19Q9Y4C8 960 aaKnown RBP12.06□□□□□ -0.48
YBX3-204ENST00000366290 ABCA6Q8N139 1617 aa12.05□□□□□ -0.48
YBX3-204ENST00000366290 CAPN5O15484 640 aaPredicted RBP12.05□□□□□ -0.48
YBX3-204ENST00000366290 LILRA1O75019 489 aa12.05□□□□□ -0.48
YBX3-204ENST00000366290 MLECQ14165 292 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms