RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 MORC1Q86VD1 984 aa18.93■□□□□ 0.62
VPS29-201ENST00000360579 PANK3Q9H999 370 aa18.93■□□□□ 0.62
VPS29-201ENST00000360579 AKAP4Q5JQC9 854 aa18.92■□□□□ 0.62
VPS29-201ENST00000360579 USPL1Q5W0Q7 1092 aa18.92■□□□□ 0.62
VPS29-201ENST00000360579 TJP1Q07157 1748 aa18.91■□□□□ 0.62
VPS29-201ENST00000360579 SOS1Q07889 1333 aaPredicted RBP18.91■□□□□ 0.62
VPS29-201ENST00000360579 LMNB1P20700 586 aa18.9■□□□□ 0.62
VPS29-201ENST00000360579 COL13A1Q5TAT6 717 aaPredicted RBP18.9■□□□□ 0.62
VPS29-201ENST00000360579 DNAJC10Q8IXB1 793 aa18.9■□□□□ 0.62
VPS29-201ENST00000360579 SLC52A2Q9HAB3 445 aa18.9■□□□□ 0.62
VPS29-201ENST00000360579 NARFQ9UHQ1 456 aa18.9■□□□□ 0.62
VPS29-201ENST00000360579 VEGFAP15692 232 aaPredicted RBP18.89■□□□□ 0.61
VPS29-201ENST00000360579 GLTPD2A6NH11 291 aa18.88■□□□□ 0.61
VPS29-201ENST00000360579 CYP19A1P11511 503 aaPredicted RBP18.88■□□□□ 0.61
VPS29-201ENST00000360579 IL13P35225 146 aa18.88■□□□□ 0.61
VPS29-201ENST00000360579 EIF4G2P78344 907 aaKnown RBP eCLIP18.88■□□□□ 0.61
VPS29-201ENST00000360579 NFIXQ14938 502 aa18.88■□□□□ 0.61
VPS29-201ENST00000360579 TTLL6Q8N841 843 aa18.88■□□□□ 0.61
VPS29-201ENST00000360579 ADAMTS7Q9UKP4 1686 aa18.88■□□□□ 0.61
VPS29-201ENST00000360579 COL15A1P39059 1388 aa18.87■□□□□ 0.61
VPS29-201ENST00000360579 RASSF7Q02833 373 aa18.87■□□□□ 0.61
VPS29-201ENST00000360579 TRIM26Q12899 539 aaPredicted RBP18.87■□□□□ 0.61
VPS29-201ENST00000360579 CLSPNQ9HAW4 1339 aa18.86■□□□□ 0.61
VPS29-201ENST00000360579 SERPINB2P05120 415 aa18.86■□□□□ 0.61
VPS29-201ENST00000360579 TNS4Q8IZW8 715 aa18.86■□□□□ 0.61
VPS29-201ENST00000360579 VSIG10Q8N0Z9 540 aa18.86■□□□□ 0.61
VPS29-201ENST00000360579 SBF1O95248 1867 aa18.86■□□□□ 0.61
VPS29-201ENST00000360579 SCN11AQ9UI33 1791 aa18.86■□□□□ 0.61
VPS29-201ENST00000360579 H0YIN7 160 aa18.85■□□□□ 0.61
VPS29-201ENST00000360579 KNSTRNQ9Y448 316 aa18.85■□□□□ 0.61
VPS29-201ENST00000360579 MRC1P22897 1456 aa18.84■□□□□ 0.61
VPS29-201ENST00000360579 C2CD5Q86YS7 1000 aa18.84■□□□□ 0.61
VPS29-201ENST00000360579 ZBTB1Q9Y2K1 713 aa18.84■□□□□ 0.61
VPS29-201ENST00000360579 RNMTO43148 476 aaKnown RBP18.83■□□□□ 0.6
VPS29-201ENST00000360579 LGR6Q9HBX8 967 aa18.83■□□□□ 0.6
VPS29-201ENST00000360579 PDZRN3Q9UPQ7 1066 aa18.83■□□□□ 0.6
VPS29-201ENST00000360579 NRXN2Q9P2S2 1712 aa18.83■□□□□ 0.6
VPS29-201ENST00000360579 HSPA5P11021 654 aaKnown RBP18.82■□□□□ 0.6
VPS29-201ENST00000360579 SLC39A6Q13433 755 aa18.82■□□□□ 0.6
VPS29-201ENST00000360579 DPY19L2Q6NUT2 758 aa18.82■□□□□ 0.6
VPS29-201ENST00000360579 BCL2L12Q9HB09 334 aa18.82■□□□□ 0.6
VPS29-201ENST00000360579 A0A087WZG4 1122 aa18.81■□□□□ 0.6
VPS29-201ENST00000360579 STARD3NLO95772 234 aa18.81■□□□□ 0.6
VPS29-201ENST00000360579 PRELPP51888 382 aa18.81■□□□□ 0.6
VPS29-201ENST00000360579 NFKBIEO00221 500 aa18.8■□□□□ 0.6
VPS29-201ENST00000360579 CAPN15O75808 1086 aa18.8■□□□□ 0.6
VPS29-201ENST00000360579 DLEC1Q9Y238 1755 aa18.8■□□□□ 0.6
VPS29-201ENST00000360579 AFDNP55196 1824 aaKnown RBP18.79■□□□□ 0.6
VPS29-201ENST00000360579 CANXP27824 592 aaKnown RBP18.79■□□□□ 0.6
VPS29-201ENST00000360579 PDE6BP35913 854 aa18.79■□□□□ 0.6
VPS29-201ENST00000360579 TTC5Q8N0Z6 440 aa18.79■□□□□ 0.6
VPS29-201ENST00000360579 HSPA1AP0DMV8 641 aaKnown RBP18.78■□□□□ 0.6
VPS29-201ENST00000360579 HSPA1BP0DMV9 641 aaKnown RBP18.78■□□□□ 0.6
VPS29-201ENST00000360579 HMOX1P09601 288 aa18.77■□□□□ 0.6
VPS29-201ENST00000360579 EIF5P55010 431 aaKnown RBP18.77■□□□□ 0.6
VPS29-201ENST00000360579 MTHFSDQ2M296 383 aaKnown RBP18.77■□□□□ 0.6
VPS29-201ENST00000360579 BRIP1Q9BX63 1249 aa18.77■□□□□ 0.6
VPS29-201ENST00000360579 U3KPZ7 1027 aaPredicted RBP18.77■□□□□ 0.6
VPS29-201ENST00000360579 CARMIL3Q8ND23 1372 aa18.77■□□□□ 0.6
VPS29-201ENST00000360579 TIAM2Q8IVF5 1701 aa18.77■□□□□ 0.59
VPS29-201ENST00000360579 SLC4A2P04920 1241 aa18.76■□□□□ 0.59
VPS29-201ENST00000360579 BICDL1Q6ZP65 573 aa18.76■□□□□ 0.59
VPS29-201ENST00000360579 ZNF622Q969S3 477 aaKnown RBP eCLIP18.76■□□□□ 0.59
VPS29-201ENST00000360579 TEX13AQ9BXU3 409 aaPredicted RBP18.76■□□□□ 0.59
VPS29-201ENST00000360579 POTECB2RU33 542 aa18.75■□□□□ 0.59
VPS29-201ENST00000360579 ERFEQ4G0M1 354 aa18.75■□□□□ 0.59
VPS29-201ENST00000360579 AMER1Q5JTC6 1135 aaPredicted RBP18.75■□□□□ 0.59
VPS29-201ENST00000360579 LTBP3Q9NS15 1303 aa18.74■□□□□ 0.59
VPS29-201ENST00000360579 C21orf2O43822 256 aa18.73■□□□□ 0.59
VPS29-201ENST00000360579 DIAPH1O60610 1272 aaKnown RBP18.73■□□□□ 0.59
VPS29-201ENST00000360579 SOGA3Q5TF21 947 aa18.73■□□□□ 0.59
VPS29-201ENST00000360579 TBC1D9BQ66K14 1250 aa18.73■□□□□ 0.59
VPS29-201ENST00000360579 NPM2Q86SE8 214 aaKnown RBP18.73■□□□□ 0.59
VPS29-201ENST00000360579 TAOK3Q9H2K8 898 aa18.73■□□□□ 0.59
VPS29-201ENST00000360579 CREBZFQ9NS37 354 aa18.73■□□□□ 0.59
VPS29-201ENST00000360579 IL6STP40189 918 aaPredicted RBP18.72■□□□□ 0.59
VPS29-201ENST00000360579 TEFQ10587 303 aa18.72■□□□□ 0.59
VPS29-201ENST00000360579 PRR5LQ6MZQ0 368 aa18.72■□□□□ 0.59
VPS29-201ENST00000360579 CHADLQ6NUI6 762 aa18.72■□□□□ 0.59
VPS29-201ENST00000360579 CNKSR1Q969H4 720 aa18.72■□□□□ 0.59
VPS29-201ENST00000360579 UBR2Q8IWV8 1755 aa18.72■□□□□ 0.59
VPS29-201ENST00000360579 NPHP1O15259 732 aa18.71■□□□□ 0.59
VPS29-201ENST00000360579 HEG1Q9ULI3 1381 aa18.7■□□□□ 0.58
VPS29-201ENST00000360579 ZNF790Q6PG37 636 aa18.7■□□□□ 0.58
VPS29-201ENST00000360579 CNBD1Q8NA66 436 aa18.7■□□□□ 0.58
VPS29-201ENST00000360579 ZNF496Q96IT1 587 aaPredicted RBP18.7■□□□□ 0.58
VPS29-201ENST00000360579 SETDB2Q96T68 719 aa18.7■□□□□ 0.58
VPS29-201ENST00000360579 ZNF219Q9P2Y4 722 aaPredicted RBP18.7■□□□□ 0.58
VPS29-201ENST00000360579 ZNF330Q9Y3S2 320 aaPredicted RBP18.7■□□□□ 0.58
VPS29-201ENST00000360579 ST5P78524 1137 aa18.69■□□□□ 0.58
VPS29-201ENST00000360579 STYK1Q6J9G0 422 aa18.69■□□□□ 0.58
VPS29-201ENST00000360579 GAS2L2Q8NHY3 880 aa18.69■□□□□ 0.58
VPS29-201ENST00000360579 PCGF6Q9BYE7 350 aa18.69■□□□□ 0.58
VPS29-201ENST00000360579 TBC1D2BQ9UPU7 963 aa18.69■□□□□ 0.58
VPS29-201ENST00000360579 IQCA1LA6NCM1 817 aa18.68■□□□□ 0.58
VPS29-201ENST00000360579 GNAT3A8MTJ3 354 aa18.68■□□□□ 0.58
VPS29-201ENST00000360579 FMNL2Q96PY5 1086 aa18.68■□□□□ 0.58
VPS29-201ENST00000360579 SCN7AQ01118 1682 aa18.68■□□□□ 0.58
VPS29-201ENST00000360579 CCDC88AQ3V6T2 1871 aa18.68■□□□□ 0.58
VPS29-201ENST00000360579 MASTLQ96GX5 879 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms