RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 ERICH6BQ5W0A0 696 aa25.38■■□□□ 1.65
CLN3-205ENST00000359984 ILDR1Q86SU0 546 aaPredicted RBP25.38■■□□□ 1.65
CLN3-205ENST00000359984 DZIP1LQ8IYY4 767 aaKnown RBP25.38■■□□□ 1.65
CLN3-205ENST00000359984 VSIG10Q8N0Z9 540 aa25.38■■□□□ 1.65
CLN3-205ENST00000359984 DBF4Q9UBU7 674 aaPredicted RBP25.38■■□□□ 1.65
CLN3-205ENST00000359984 ANXA1P04083 346 aa25.36■■□□□ 1.65
CLN3-205ENST00000359984 MS4A1P11836 297 aa25.36■■□□□ 1.65
CLN3-205ENST00000359984 SLC4A9Q96Q91 983 aa25.36■■□□□ 1.65
CLN3-205ENST00000359984 PTPRCP08575 1304 aa25.36■■□□□ 1.65
CLN3-205ENST00000359984 FLIIQ13045 1269 aa25.36■■□□□ 1.65
CLN3-205ENST00000359984 PROSER3Q2NL68 480 aa25.36■■□□□ 1.65
CLN3-205ENST00000359984 FTSJ3Q8IY81 847 aaKnown RBP25.36■■□□□ 1.65
CLN3-205ENST00000359984 API5Q9BZZ5 524 aaKnown RBP25.36■■□□□ 1.65
CLN3-205ENST00000359984 PDIA6Q15084 440 aa25.35■■□□□ 1.65
CLN3-205ENST00000359984 PHAXQ9H814 394 aaKnown RBP25.35■■□□□ 1.65
CLN3-205ENST00000359984 DDX21Q9NR30 783 aaKnown RBP eCLIP25.35■■□□□ 1.65
CLN3-205ENST00000359984 FAM196AQ6ZSG2 479 aa25.34■■□□□ 1.65
CLN3-205ENST00000359984 SMARCC1Q92922 1105 aaPredicted RBP25.34■■□□□ 1.65
CLN3-205ENST00000359984 COG6Q9Y2V7 657 aa25.34■■□□□ 1.65
CLN3-205ENST00000359984 NHSQ6T4R5 1651 aa25.34■■□□□ 1.65
CLN3-205ENST00000359984 DNAJC10Q8IXB1 793 aa25.34■■□□□ 1.65
CLN3-205ENST00000359984 RGS12O14924 1447 aa25.33■■□□□ 1.65
CLN3-205ENST00000359984 CACNA1FO60840 1977 aa25.33■■□□□ 1.65
CLN3-205ENST00000359984 PELP1Q8IZL8 1130 aaKnown RBP25.33■■□□□ 1.65
CLN3-205ENST00000359984 TEX13AQ9BXU3 409 aaPredicted RBP25.33■■□□□ 1.65
CLN3-205ENST00000359984 PALLDQ8WX93 1383 aa25.33■■□□□ 1.65
CLN3-205ENST00000359984 LAMB4A4D0S4 1761 aa25.33■■□□□ 1.64
CLN3-205ENST00000359984 HYPKQ9NX55 129 aa25.32■■□□□ 1.64
CLN3-205ENST00000359984 SBF2Q86WG5 1849 aa25.31■■□□□ 1.64
CLN3-205ENST00000359984 ABCC4O15439 1325 aa25.31■■□□□ 1.64
CLN3-205ENST00000359984 TMEM57Q8N5G2 664 aa25.31■■□□□ 1.64
CLN3-205ENST00000359984 LOC102724428A0A0B4J2F2 783 aa25.3■■□□□ 1.64
CLN3-205ENST00000359984 SIK1P57059 783 aa25.3■■□□□ 1.64
CLN3-205ENST00000359984 FKBP5Q13451 457 aaPredicted RBP25.3■■□□□ 1.64
CLN3-205ENST00000359984 ERBB4Q15303 1308 aa25.3■■□□□ 1.64
CLN3-205ENST00000359984 A1BGP04217 495 aa25.3■■□□□ 1.64
CLN3-205ENST00000359984 BCL11BQ9C0K0 894 aaPredicted RBP25.3■■□□□ 1.64
CLN3-205ENST00000359984 MYL6BP14649 208 aa25.29■■□□□ 1.64
CLN3-205ENST00000359984 PIP4K2AP48426 406 aaPredicted RBP25.29■■□□□ 1.64
CLN3-205ENST00000359984 MVPQ14764 893 aaKnown RBP25.29■■□□□ 1.64
CLN3-205ENST00000359984 BTAF1O14981 1849 aa25.28■■□□□ 1.64
CLN3-205ENST00000359984 NBPF26B4DH59 902 aa25.28■■□□□ 1.64
CLN3-205ENST00000359984 NBPF14Q5TI25 921 aa25.28■■□□□ 1.64
CLN3-205ENST00000359984 NBPF10Q6P3W6 841 aaKnown RBP25.28■■□□□ 1.64
CLN3-205ENST00000359984 LRP10Q7Z4F1 713 aa25.28■■□□□ 1.64
CLN3-205ENST00000359984 NBPF15Q8N660 670 aa25.28■■□□□ 1.64
CLN3-205ENST00000359984 STARD3NLO95772 234 aa25.28■■□□□ 1.64
CLN3-205ENST00000359984 F6X3S4 739 aa25.27■■□□□ 1.64
CLN3-205ENST00000359984 CYP19A1P11511 503 aaPredicted RBP25.27■■□□□ 1.64
CLN3-205ENST00000359984 ATP6V1AP38606 617 aa25.26■■□□□ 1.63
CLN3-205ENST00000359984 ITPRIPQ8IWB1 547 aa25.26■■□□□ 1.63
CLN3-205ENST00000359984 TJP1Q07157 1748 aa25.26■■□□□ 1.63
CLN3-205ENST00000359984 PPP4R2Q9NY27 417 aa25.25■■□□□ 1.63
CLN3-205ENST00000359984 TRIM37O94972 964 aa25.24■■□□□ 1.63
CLN3-205ENST00000359984 ITPK1Q13572 414 aa25.24■■□□□ 1.63
CLN3-205ENST00000359984 XAGE3Q8WTP9 111 aa25.24■■□□□ 1.63
CLN3-205ENST00000359984 AIMP1Q12904 312 aaKnown RBP25.23■■□□□ 1.63
CLN3-205ENST00000359984 INTS3Q68E01 1043 aaKnown RBP25.23■■□□□ 1.63
CLN3-205ENST00000359984 PI4KAP2A4QPH2 592 aa25.23■■□□□ 1.63
CLN3-205ENST00000359984 COPS6Q7L5N1 327 aa25.23■■□□□ 1.63
CLN3-205ENST00000359984 PI4KAP1Q8N8J0 262 aa25.23■■□□□ 1.63
CLN3-205ENST00000359984 SLC4A10Q6U841 1118 aa25.22■■□□□ 1.63
CLN3-205ENST00000359984 ADCY9O60503 1353 aa25.22■■□□□ 1.63
CLN3-205ENST00000359984 DDX19BQ9UMR2 479 aa25.21■■□□□ 1.63
CLN3-205ENST00000359984 CICQ96RK0 1608 aaPredicted RBP25.2■■□□□ 1.63
CLN3-205ENST00000359984 KSR2Q6VAB6 950 aa25.2■■□□□ 1.62
CLN3-205ENST00000359984 EP400Q96L91 3159 aa25.2■■□□□ 1.62
CLN3-205ENST00000359984 DDX58O95786 925 aaKnown RBP25.19■■□□□ 1.62
CLN3-205ENST00000359984 DNAAF4Q8WXU2 420 aa25.19■■□□□ 1.62
CLN3-205ENST00000359984 CCT4P50991 539 aaKnown RBP25.19■■□□□ 1.62
CLN3-205ENST00000359984 KCNQ4P56696 695 aa25.19■■□□□ 1.62
CLN3-205ENST00000359984 ZBTB1Q9Y2K1 713 aa25.19■■□□□ 1.62
CLN3-205ENST00000359984 ZNF831Q5JPB2 1677 aa25.19■■□□□ 1.62
CLN3-205ENST00000359984 MAP3K2Q9Y2U5 619 aa25.18■■□□□ 1.62
CLN3-205ENST00000359984 INTS5Q6P9B9 1019 aaKnown RBP25.17■■□□□ 1.62
CLN3-205ENST00000359984 ZBTB7BO15156 539 aaPredicted RBP25.17■■□□□ 1.62
CLN3-205ENST00000359984 CRKLP46109 303 aaKnown RBP25.17■■□□□ 1.62
CLN3-205ENST00000359984 LINC00116Q8NCU8 138 aa25.17■■□□□ 1.62
CLN3-205ENST00000359984 CCDC87Q9NVE4 849 aa25.17■■□□□ 1.62
CLN3-205ENST00000359984 CCNL1Q9UK58 526 aaPredicted RBP25.17■■□□□ 1.62
CLN3-205ENST00000359984 PXDNLA1KZ92 1463 aa25.16■■□□□ 1.62
CLN3-205ENST00000359984 AAMPQ13685 434 aa25.16■■□□□ 1.62
CLN3-205ENST00000359984 ANKRD13DQ6ZTN6 518 aa25.16■■□□□ 1.62
CLN3-205ENST00000359984 RIC3Q7Z5B4 369 aa25.16■■□□□ 1.62
CLN3-205ENST00000359984 B4GALNT3Q6L9W6 998 aa25.15■■□□□ 1.62
CLN3-205ENST00000359984 TTLL7Q6ZT98 887 aa25.15■■□□□ 1.62
CLN3-205ENST00000359984 ZBTB40Q9NUA8 1239 aa25.15■■□□□ 1.62
CLN3-205ENST00000359984 LY75O60449 1722 aa25.15■■□□□ 1.62
CLN3-205ENST00000359984 BEND3Q5T5X7 828 aa25.14■■□□□ 1.61
CLN3-205ENST00000359984 ZNF330Q9Y3S2 320 aaPredicted RBP25.14■■□□□ 1.61
CLN3-205ENST00000359984 PLBD2Q8NHP8 589 aa25.13■■□□□ 1.61
CLN3-205ENST00000359984 IL6STP40189 918 aaPredicted RBP25.13■■□□□ 1.61
CLN3-205ENST00000359984 CCDC136Q96JN2 1154 aa25.13■■□□□ 1.61
CLN3-205ENST00000359984 COL5A3P25940 1745 aaPredicted RBP25.13■■□□□ 1.61
CLN3-205ENST00000359984 SRCIN1Q9C0H9 1055 aa25.12■■□□□ 1.61
CLN3-205ENST00000359984 CHMP4BQ9H444 224 aaKnown RBP25.12■■□□□ 1.61
CLN3-205ENST00000359984 ATP10DQ9P241 1426 aa25.12■■□□□ 1.61
CLN3-205ENST00000359984 RREB1Q92766 1687 aa25.11■■□□□ 1.61
CLN3-205ENST00000359984 EIF5P55010 431 aaKnown RBP25.11■■□□□ 1.61
CLN3-205ENST00000359984 METTL22Q9BUU2 404 aaPredicted RBP25.11■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms