RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 GJD4Q96KN9 370 aaPredicted RBP23.67■■□□□ 1.38
CLN3-204ENST00000357857 CHMP4BQ9H444 224 aaKnown RBP23.67■■□□□ 1.38
CLN3-204ENST00000357857 TRPC5Q9UL62 973 aaPredicted RBP23.67■■□□□ 1.38
CLN3-204ENST00000357857 PHAXQ9H814 394 aaKnown RBP23.67■■□□□ 1.38
CLN3-204ENST00000357857 A0A0G2JS52 829 aa23.66■■□□□ 1.38
CLN3-204ENST00000357857 MYT1Q01538 1121 aa23.66■■□□□ 1.38
CLN3-204ENST00000357857 F6X3S4 739 aa23.64■■□□□ 1.38
CLN3-204ENST00000357857 ANXA1P04083 346 aa23.64■■□□□ 1.38
CLN3-204ENST00000357857 PRIM1P49642 420 aaKnown RBP23.64■■□□□ 1.38
CLN3-204ENST00000357857 PELP1Q8IZL8 1130 aaKnown RBP23.64■■□□□ 1.38
CLN3-204ENST00000357857 SYTL4Q96C24 671 aaPredicted RBP23.64■■□□□ 1.38
CLN3-204ENST00000357857 DDX21Q9NR30 783 aaKnown RBP eCLIP23.64■■□□□ 1.38
CLN3-204ENST00000357857 HYPKQ9NX55 129 aa23.64■■□□□ 1.38
CLN3-204ENST00000357857 USP16Q9Y5T5 823 aa23.64■■□□□ 1.38
CLN3-204ENST00000357857 PTCD1O75127 700 aaKnown RBP23.64■■□□□ 1.37
CLN3-204ENST00000357857 PROSER3Q2NL68 480 aa23.64■■□□□ 1.37
CLN3-204ENST00000357857 ATG3Q9NT62 314 aa23.64■■□□□ 1.37
CLN3-204ENST00000357857 ZBTB40Q9NUA8 1239 aa23.64■■□□□ 1.37
CLN3-204ENST00000357857 ASAP1Q9ULH1 1129 aa23.64■■□□□ 1.37
CLN3-204ENST00000357857 ZBTB7BO15156 539 aaPredicted RBP23.63■■□□□ 1.37
CLN3-204ENST00000357857 PXDNLA1KZ92 1463 aa23.63■■□□□ 1.37
CLN3-204ENST00000357857 CCT4P50991 539 aaKnown RBP23.62■■□□□ 1.37
CLN3-204ENST00000357857 SLC4A10Q6U841 1118 aa23.62■■□□□ 1.37
CLN3-204ENST00000357857 PCDHB15Q9Y5E8 787 aa23.62■■□□□ 1.37
CLN3-204ENST00000357857 KDM2BQ8NHM5 1336 aa23.62■■□□□ 1.37
CLN3-204ENST00000357857 PDIA6Q15084 440 aa23.62■■□□□ 1.37
CLN3-204ENST00000357857 CENPQQ7L2Z9 268 aaPredicted RBP23.61■■□□□ 1.37
CLN3-204ENST00000357857 ACSBG1Q96GR2 724 aa23.61■■□□□ 1.37
CLN3-204ENST00000357857 QTRT2Q9H974 415 aaKnown RBP23.6■■□□□ 1.37
CLN3-204ENST00000357857 VSIG10Q8N0Z9 540 aa23.59■■□□□ 1.37
CLN3-204ENST00000357857 ERBB4Q15303 1308 aa23.58■■□□□ 1.37
CLN3-204ENST00000357857 ONECUT3O60422 494 aaPredicted RBP23.58■■□□□ 1.37
CLN3-204ENST00000357857 MYL6BP14649 208 aa23.57■■□□□ 1.36
CLN3-204ENST00000357857 RBM42Q9BTD8 480 aaKnown RBP23.57■■□□□ 1.36
CLN3-204ENST00000357857 IGHDP01880 384 aa23.56■■□□□ 1.36
CLN3-204ENST00000357857 TEX13AQ9BXU3 409 aaPredicted RBP23.56■■□□□ 1.36
CLN3-204ENST00000357857 ADCY9O60503 1353 aa23.56■■□□□ 1.36
CLN3-204ENST00000357857 PI4KAP2A4QPH2 592 aa23.56■■□□□ 1.36
CLN3-204ENST00000357857 DDX58O95786 925 aaKnown RBP23.56■■□□□ 1.36
CLN3-204ENST00000357857 PI4KAP1Q8N8J0 262 aa23.56■■□□□ 1.36
CLN3-204ENST00000357857 DNAAF4Q8WXU2 420 aa23.56■■□□□ 1.36
CLN3-204ENST00000357857 RWDD1Q9H446 243 aaPredicted RBP23.55■■□□□ 1.36
CLN3-204ENST00000357857 KSR2Q6VAB6 950 aa23.54■■□□□ 1.36
CLN3-204ENST00000357857 LRP10Q7Z4F1 713 aa23.54■■□□□ 1.36
CLN3-204ENST00000357857 TJP1Q07157 1748 aa23.54■■□□□ 1.36
CLN3-204ENST00000357857 PIP4K2AP48426 406 aaPredicted RBP23.53■■□□□ 1.36
CLN3-204ENST00000357857 AIMP1Q12904 312 aaKnown RBP23.53■■□□□ 1.36
CLN3-204ENST00000357857 SEPT12Q8IYM1 358 aa23.53■■□□□ 1.36
CLN3-204ENST00000357857 XAGE3Q8WTP9 111 aa23.53■■□□□ 1.36
CLN3-204ENST00000357857 DNAJC10Q8IXB1 793 aa23.53■■□□□ 1.36
CLN3-204ENST00000357857 MAP3K2Q9Y2U5 619 aa23.53■■□□□ 1.36
CLN3-204ENST00000357857 ATP10DQ9P241 1426 aa23.52■■□□□ 1.36
CLN3-204ENST00000357857 NHSQ6T4R5 1651 aa23.52■■□□□ 1.36
CLN3-204ENST00000357857 NBPF26B4DH59 902 aa23.52■■□□□ 1.36
CLN3-204ENST00000357857 NBPF14Q5TI25 921 aa23.52■■□□□ 1.36
CLN3-204ENST00000357857 NBPF10Q6P3W6 841 aaKnown RBP23.52■■□□□ 1.36
CLN3-204ENST00000357857 COPS6Q7L5N1 327 aa23.52■■□□□ 1.36
CLN3-204ENST00000357857 NBPF15Q8N660 670 aa23.52■■□□□ 1.36
CLN3-204ENST00000357857 MEIS3Q99687 375 aa23.52■■□□□ 1.36
CLN3-204ENST00000357857 C1orf115Q9H7X2 142 aa23.52■■□□□ 1.36
CLN3-204ENST00000357857 KCNQ2O43526 872 aa23.51■■□□□ 1.35
CLN3-204ENST00000357857 A1BGP04217 495 aa23.51■■□□□ 1.35
CLN3-204ENST00000357857 HDAC1Q13547 482 aaPredicted RBP23.51■■□□□ 1.35
CLN3-204ENST00000357857 SRCIN1Q9C0H9 1055 aa23.51■■□□□ 1.35
CLN3-204ENST00000357857 SBF2Q86WG5 1849 aa23.51■■□□□ 1.35
CLN3-204ENST00000357857 STARD3NLO95772 234 aa23.5■■□□□ 1.35
CLN3-204ENST00000357857 ZNF772Q68DY9 489 aaPredicted RBP23.5■■□□□ 1.35
CLN3-204ENST00000357857 SLC4A9Q96Q91 983 aa23.5■■□□□ 1.35
CLN3-204ENST00000357857 ARFGEF2Q9Y6D5 1785 aa23.5■■□□□ 1.35
CLN3-204ENST00000357857 BEND3Q5T5X7 828 aa23.5■■□□□ 1.35
CLN3-204ENST00000357857 SMARCC1Q92922 1105 aaPredicted RBP23.5■■□□□ 1.35
CLN3-204ENST00000357857 BTAF1O14981 1849 aa23.49■■□□□ 1.35
CLN3-204ENST00000357857 BRWD3Q6RI45 1802 aa23.49■■□□□ 1.35
CLN3-204ENST00000357857 CICQ96RK0 1608 aaPredicted RBP23.49■■□□□ 1.35
CLN3-204ENST00000357857 RIC3Q7Z5B4 369 aa23.48■■□□□ 1.35
CLN3-204ENST00000357857 GNAI3P08754 354 aa23.47■■□□□ 1.35
CLN3-204ENST00000357857 PALLDQ8WX93 1383 aa23.47■■□□□ 1.35
CLN3-204ENST00000357857 ANKRD13DQ6ZTN6 518 aa23.47■■□□□ 1.35
CLN3-204ENST00000357857 FAM182BQ5T319 152 aa23.46■■□□□ 1.35
CLN3-204ENST00000357857 NUP188Q5SRE5 1749 aa23.46■■□□□ 1.35
CLN3-204ENST00000357857 ZNF831Q5JPB2 1677 aa23.46■■□□□ 1.35
CLN3-204ENST00000357857 ALDH1L1O75891 902 aa23.45■■□□□ 1.34
CLN3-204ENST00000357857 CYP19A1P11511 503 aaPredicted RBP23.45■■□□□ 1.34
CLN3-204ENST00000357857 LOC102724428A0A0B4J2F2 783 aa23.45■■□□□ 1.34
CLN3-204ENST00000357857 SIK1P57059 783 aa23.45■■□□□ 1.34
CLN3-204ENST00000357857 USP44Q9H0E7 712 aa23.45■■□□□ 1.34
CLN3-204ENST00000357857 AFDNP55196 1824 aaKnown RBP23.44■■□□□ 1.34
CLN3-204ENST00000357857 GNAI2P04899 355 aa23.44■■□□□ 1.34
CLN3-204ENST00000357857 RBM6P78332 1123 aaKnown RBP23.44■■□□□ 1.34
CLN3-204ENST00000357857 LINS1Q8NG48 757 aa23.44■■□□□ 1.34
CLN3-204ENST00000357857 PLBD2Q8NHP8 589 aa23.44■■□□□ 1.34
CLN3-204ENST00000357857 METTL22Q9BUU2 404 aaPredicted RBP23.44■■□□□ 1.34
CLN3-204ENST00000357857 ATP6V1AP38606 617 aa23.43■■□□□ 1.34
CLN3-204ENST00000357857 NEXNQ0ZGT2 675 aa23.43■■□□□ 1.34
CLN3-204ENST00000357857 RPAP2Q8IXW5 612 aaPredicted RBP23.43■■□□□ 1.34
CLN3-204ENST00000357857 SIRT2Q8IXJ6 389 aa23.42■■□□□ 1.34
CLN3-204ENST00000357857 ANKRD44Q8N8A2 993 aa23.42■■□□□ 1.34
CLN3-204ENST00000357857 UBTFL1P0CB47 393 aaPredicted RBP23.42■■□□□ 1.34
CLN3-204ENST00000357857 CEP85Q6P2H3 762 aa23.42■■□□□ 1.34
CLN3-204ENST00000357857 TTLL7Q6ZT98 887 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 142 ms