RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 SLC12A7Q9Y666 1083 aa7.5□□□□□ -1.21
UPF2-201ENST00000356352 FILIP1Q7Z7B0 1213 aa7.5□□□□□ -1.21
UPF2-201ENST00000356352 PAFAH1B1P43034 410 aa7.49□□□□□ -1.21
UPF2-201ENST00000356352 PPP4R3BQ5MIZ7 849 aa7.49□□□□□ -1.21
UPF2-201ENST00000356352 C8orf76Q96K31 380 aa7.49□□□□□ -1.21
UPF2-201ENST00000356352 CFTRP13569 1480 aa7.49□□□□□ -1.21
UPF2-201ENST00000356352 NSD3Q9BZ95 1437 aa7.49□□□□□ -1.21
UPF2-201ENST00000356352 NCAPD3P42695 1498 aa7.49□□□□□ -1.21
UPF2-201ENST00000356352 CCDC194A0A1B0GVG4 234 aa7.49□□□□□ -1.21
UPF2-201ENST00000356352 GOLGA6L9A6NEM1 432 aa7.49□□□□□ -1.21
UPF2-201ENST00000356352 TOP1P11387 765 aaKnown RBP7.49□□□□□ -1.21
UPF2-201ENST00000356352 IFIT5Q13325 482 aaKnown RBP7.49□□□□□ -1.21
UPF2-201ENST00000356352 PTPN14Q15678 1187 aa7.49□□□□□ -1.21
UPF2-201ENST00000356352 BICDL1Q6ZP65 573 aa7.49□□□□□ -1.21
UPF2-201ENST00000356352 TEX13AQ9BXU3 409 aaPredicted RBP7.49□□□□□ -1.21
UPF2-201ENST00000356352 KIF5BP33176 963 aa7.49□□□□□ -1.21
UPF2-201ENST00000356352 IFFO1Q0D2I5 559 aa7.49□□□□□ -1.21
UPF2-201ENST00000356352 CCDC96Q2M329 555 aa7.49□□□□□ -1.21
UPF2-201ENST00000356352 CCDC178Q5BJE1 867 aa7.49□□□□□ -1.21
UPF2-201ENST00000356352 CATIPQ7Z7H3 387 aa7.49□□□□□ -1.21
UPF2-201ENST00000356352 RPGRQ92834 1020 aaKnown RBP7.49□□□□□ -1.21
UPF2-201ENST00000356352 LRRC45Q96CN5 670 aa7.49□□□□□ -1.21
UPF2-201ENST00000356352 HYPKQ9NX55 129 aa7.49□□□□□ -1.21
UPF2-201ENST00000356352 ANKIB1Q9P2G1 1089 aa7.49□□□□□ -1.21
UPF2-201ENST00000356352 GSTTP1A0A1W2PQM5 241 aa7.49□□□□□ -1.21
UPF2-201ENST00000356352 LDHCP07864 332 aa7.49□□□□□ -1.21
UPF2-201ENST00000356352 KANK3Q6NY19 840 aa7.49□□□□□ -1.21
UPF2-201ENST00000356352 CALML4Q96GE6 196 aa7.49□□□□□ -1.21
UPF2-201ENST00000356352 MCM4P33991 863 aa7.49□□□□□ -1.21
UPF2-201ENST00000356352 GSDMDP57764 484 aa7.49□□□□□ -1.21
UPF2-201ENST00000356352 TRAF1Q13077 416 aa7.49□□□□□ -1.21
UPF2-201ENST00000356352 KIF18AQ8NI77 898 aa7.49□□□□□ -1.21
UPF2-201ENST00000356352 DDX11Q96FC9 970 aa7.49□□□□□ -1.21
UPF2-201ENST00000356352 IL1RAPL2Q9NP60 686 aa7.49□□□□□ -1.21
UPF2-201ENST00000356352 PABPN1LA6NDY0 278 aaKnown RBP7.48□□□□□ -1.21
UPF2-201ENST00000356352 ZNF213O14771 459 aa7.48□□□□□ -1.21
UPF2-201ENST00000356352 TAF7Q15545 349 aaPredicted RBP7.48□□□□□ -1.21
UPF2-201ENST00000356352 GRIPAP1Q4V328 841 aa7.48□□□□□ -1.21
UPF2-201ENST00000356352 DUSP27Q5VZP5 1158 aa7.48□□□□□ -1.21
UPF2-201ENST00000356352 DHX29Q7Z478 1369 aaKnown RBP7.48□□□□□ -1.21
UPF2-201ENST00000356352 CCDC172P0C7W6 258 aa7.48□□□□□ -1.21
UPF2-201ENST00000356352 TMPOP42166 694 aaKnown RBP7.48□□□□□ -1.21
UPF2-201ENST00000356352 SPTY2D1Q68D10 685 aaPredicted RBP7.48□□□□□ -1.21
UPF2-201ENST00000356352 NUTM1Q86Y26 1132 aa7.48□□□□□ -1.21
UPF2-201ENST00000356352 NUDT16Q96DE0 195 aaKnown RBP7.48□□□□□ -1.21
UPF2-201ENST00000356352 CCDC61Q9Y6R9 512 aa7.48□□□□□ -1.21
UPF2-201ENST00000356352 IFI16Q16666 785 aaKnown RBP7.48□□□□□ -1.21
UPF2-201ENST00000356352 TMEM87AQ8NBN3 555 aa7.48□□□□□ -1.21
UPF2-201ENST00000356352 DDX19AQ9NUU7 478 aaKnown RBP7.48□□□□□ -1.21
UPF2-201ENST00000356352 PTPRCP08575 1304 aa7.48□□□□□ -1.21
UPF2-201ENST00000356352 GOLGA8AA7E2F4 631 aa7.48□□□□□ -1.21
UPF2-201ENST00000356352 GOLGA8BA8MQT2 603 aa7.48□□□□□ -1.21
UPF2-201ENST00000356352 MINDY4BA8MYZ0 360 aa7.48□□□□□ -1.21
UPF2-201ENST00000356352 CTNNA2P26232 953 aa7.48□□□□□ -1.21
UPF2-201ENST00000356352 NBPF1Q3BBV0 1214 aa7.48□□□□□ -1.21
UPF2-201ENST00000356352 PRPF40BQ6NWY9 871 aaKnown RBP7.48□□□□□ -1.21
UPF2-201ENST00000356352 TSNARE1Q96NA8 513 aa7.48□□□□□ -1.21
UPF2-201ENST00000356352 CGNQ9P2M7 1197 aaKnown RBP7.48□□□□□ -1.21
UPF2-201ENST00000356352 NLRP5P59047 1200 aa7.47□□□□□ -1.21
UPF2-201ENST00000356352 EHBP1Q8NDI1 1231 aa7.47□□□□□ -1.21
UPF2-201ENST00000356352 MYD88Q99836 296 aa7.47□□□□□ -1.21
UPF2-201ENST00000356352 SLFN5Q08AF3 891 aa7.47□□□□□ -1.21
UPF2-201ENST00000356352 RRS1Q15050 365 aaKnown RBP7.47□□□□□ -1.21
UPF2-201ENST00000356352 ZSCAN30Q86W11 494 aa7.47□□□□□ -1.21
UPF2-201ENST00000356352 PIBF1Q8WXW3 757 aa7.47□□□□□ -1.21
UPF2-201ENST00000356352 DRC1Q96MC2 740 aa7.47□□□□□ -1.21
UPF2-201ENST00000356352 NUP88Q99567 741 aaPredicted RBP7.47□□□□□ -1.21
UPF2-201ENST00000356352 UBA5Q9GZZ9 404 aa7.47□□□□□ -1.21
UPF2-201ENST00000356352 TCP11L1Q9NUJ3 509 aa7.47□□□□□ -1.21
UPF2-201ENST00000356352 CAVIN2O95810 425 aa7.47□□□□□ -1.21
UPF2-201ENST00000356352 GSTO1P78417 241 aa7.47□□□□□ -1.21
UPF2-201ENST00000356352 KIF4BQ2VIQ3 1234 aa7.47□□□□□ -1.21
UPF2-201ENST00000356352 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.47□□□□□ -1.21
UPF2-201ENST00000356352 NSD2O96028 1365 aa7.47□□□□□ -1.21
UPF2-201ENST00000356352 GOLIM4O00461 696 aa7.47□□□□□ -1.21
UPF2-201ENST00000356352 FERP16591 822 aa7.47□□□□□ -1.21
UPF2-201ENST00000356352 RBM10P98175 930 aaKnown RBP7.47□□□□□ -1.21
UPF2-201ENST00000356352 USP37Q86T82 979 aa7.47□□□□□ -1.21
UPF2-201ENST00000356352 TMEM57Q8N5G2 664 aa7.47□□□□□ -1.21
UPF2-201ENST00000356352 CNNM3Q8NE01 707 aa7.47□□□□□ -1.21
UPF2-201ENST00000356352 GIMAP7Q8NHV1 300 aa7.47□□□□□ -1.21
UPF2-201ENST00000356352 EVI5LQ96CN4 794 aa7.47□□□□□ -1.21
UPF2-201ENST00000356352 CCDC113Q9H0I3 377 aa7.47□□□□□ -1.21
UPF2-201ENST00000356352 SPINK5Q9NQ38 1064 aaPredicted RBP7.47□□□□□ -1.21
UPF2-201ENST00000356352 BAG3O95817 575 aa7.46□□□□□ -1.21
UPF2-201ENST00000356352 PDE4BQ07343 736 aa7.46□□□□□ -1.21
UPF2-201ENST00000356352 SREK1Q8WXA9 508 aaKnown RBP7.46□□□□□ -1.21
UPF2-201ENST00000356352 RANBP6O60518 1105 aaKnown RBP7.46□□□□□ -1.21
UPF2-201ENST00000356352 HLA-DOAP06340 250 aa7.46□□□□□ -1.21
UPF2-201ENST00000356352 BBXQ8WY36 941 aaPredicted RBP7.46□□□□□ -1.21
UPF2-201ENST00000356352 CDC5LQ99459 802 aaKnown RBP7.46□□□□□ -1.21
UPF2-201ENST00000356352 GOPCQ9HD26 462 aa7.46□□□□□ -1.21
UPF2-201ENST00000356352 CABP5Q9NP86 173 aa7.46□□□□□ -1.21
UPF2-201ENST00000356352 STX1AQ16623 288 aa7.46□□□□□ -1.22
UPF2-201ENST00000356352 CTNNBL1Q8WYA6 563 aaPredicted RBP7.46□□□□□ -1.22
UPF2-201ENST00000356352 CEP63Q96MT8 703 aa7.46□□□□□ -1.22
UPF2-201ENST00000356352 RMND1Q9NWS8 449 aa7.46□□□□□ -1.22
UPF2-201ENST00000356352 FAM135AQ9P2D6 1515 aa7.46□□□□□ -1.22
UPF2-201ENST00000356352 AKNAQ7Z591 1439 aa7.46□□□□□ -1.22
UPF2-201ENST00000356352 TTC21BQ7Z4L5 1316 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms