RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 VEGFAP15692 232 aaPredicted RBP15.45■□□□□ 0.06
RTN3-204ENST00000354497 ZNF831Q5JPB2 1677 aa15.45■□□□□ 0.06
RTN3-204ENST00000354497 POLRMTO00411 1230 aaKnown RBP15.44■□□□□ 0.06
RTN3-204ENST00000354497 PLEKHO1Q53GL0 409 aaPredicted RBP15.44■□□□□ 0.06
RTN3-204ENST00000354497 POLKQ9UBT6 870 aa15.44■□□□□ 0.06
RTN3-204ENST00000354497 KDM6AO15550 1401 aaPredicted RBP15.43■□□□□ 0.06
RTN3-204ENST00000354497 GLTPD2A6NH11 291 aa15.43■□□□□ 0.06
RTN3-204ENST00000354497 ZPR1O75312 459 aa15.43■□□□□ 0.06
RTN3-204ENST00000354497 LMNB1P20700 586 aa15.43■□□□□ 0.06
RTN3-204ENST00000354497 ZC3H4Q9UPT8 1303 aaKnown RBP15.43■□□□□ 0.06
RTN3-204ENST00000354497 MTHFSP49914 203 aa15.43■□□□□ 0.06
RTN3-204ENST00000354497 USPL1Q5W0Q7 1092 aa15.43■□□□□ 0.06
RTN3-204ENST00000354497 POLR3GLQ9BT43 218 aa15.43■□□□□ 0.06
RTN3-204ENST00000354497 C1orf141Q5JVX7 400 aa15.42■□□□□ 0.06
RTN3-204ENST00000354497 PRKCSHP14314 528 aaPredicted RBP15.41■□□□□ 0.06
RTN3-204ENST00000354497 NFATC2IPQ8NCF5 419 aa15.41■□□□□ 0.06
RTN3-204ENST00000354497 MKRN1Q9UHC7 482 aaKnown RBP15.41■□□□□ 0.06
RTN3-204ENST00000354497 SBF1O95248 1867 aa15.41■□□□□ 0.06
RTN3-204ENST00000354497 MYH14Q7Z406 1995 aaKnown RBP15.41■□□□□ 0.06
RTN3-204ENST00000354497 TM4SF1P30408 202 aa15.4■□□□□ 0.06
RTN3-204ENST00000354497 TIAM2Q8IVF5 1701 aa15.4■□□□□ 0.06
RTN3-204ENST00000354497 AMOTQ4VCS5 1084 aa15.39■□□□□ 0.05
RTN3-204ENST00000354497 INTS5Q6P9B9 1019 aaKnown RBP15.39■□□□□ 0.05
RTN3-204ENST00000354497 C2CD5Q86YS7 1000 aa15.39■□□□□ 0.05
RTN3-204ENST00000354497 TTLL6Q8N841 843 aa15.39■□□□□ 0.05
RTN3-204ENST00000354497 TJP1Q07157 1748 aa15.39■□□□□ 0.05
RTN3-204ENST00000354497 ZEB1P37275 1124 aaPredicted RBP15.38■□□□□ 0.05
RTN3-204ENST00000354497 DNAJC10Q8IXB1 793 aa15.38■□□□□ 0.05
RTN3-204ENST00000354497 NFIXQ14938 502 aa15.37■□□□□ 0.05
RTN3-204ENST00000354497 DPY19L2Q6NUT2 758 aa15.37■□□□□ 0.05
RTN3-204ENST00000354497 SERPINB2P05120 415 aa15.36■□□□□ 0.05
RTN3-204ENST00000354497 POLA2Q14181 598 aa15.36■□□□□ 0.05
RTN3-204ENST00000354497 H0YIN7 160 aa15.35■□□□□ 0.05
RTN3-204ENST00000354497 NFKBIEO00221 500 aa15.35■□□□□ 0.05
RTN3-204ENST00000354497 BICDL1Q6ZP65 573 aa15.35■□□□□ 0.05
RTN3-204ENST00000354497 AEBP1Q8IUX7 1158 aa15.35■□□□□ 0.05
RTN3-204ENST00000354497 PCNTO95613 3336 aa15.35■□□□□ 0.05
RTN3-204ENST00000354497 SOS1Q07889 1333 aaPredicted RBP15.35■□□□□ 0.05
RTN3-204ENST00000354497 POTECB2RU33 542 aa15.34■□□□□ 0.05
RTN3-204ENST00000354497 ZNF622Q969S3 477 aaKnown RBP eCLIP15.34■□□□□ 0.053e-7■■■■□ 19.7
RTN3-204ENST00000354497 CREBZFQ9NS37 354 aa15.34■□□□□ 0.05
RTN3-204ENST00000354497 COL15A1P39059 1388 aa15.34■□□□□ 0.05
RTN3-204ENST00000354497 FOXN1O15353 648 aa15.34■□□□□ 0.05
RTN3-204ENST00000354497 ERFEQ4G0M1 354 aa15.34■□□□□ 0.05
RTN3-204ENST00000354497 CHADLQ6NUI6 762 aa15.34■□□□□ 0.05
RTN3-204ENST00000354497 AIDAQ96BJ3 306 aa15.34■□□□□ 0.05
RTN3-204ENST00000354497 NARFQ9UHQ1 456 aa15.34■□□□□ 0.05
RTN3-204ENST00000354497 CARMIL3Q8ND23 1372 aa15.33■□□□□ 0.04
RTN3-204ENST00000354497 ADAMTS7Q9UKP4 1686 aa15.33■□□□□ 0.04
RTN3-204ENST00000354497 AFDNP55196 1824 aaKnown RBP15.33■□□□□ 0.04
RTN3-204ENST00000354497 C21orf2O43822 256 aa15.32■□□□□ 0.04
RTN3-204ENST00000354497 CYP19A1P11511 503 aaPredicted RBP15.32■□□□□ 0.04
RTN3-204ENST00000354497 SULT6B1Q6IMI4 303 aa15.32■□□□□ 0.04
RTN3-204ENST00000354497 ZBTB1Q9Y2K1 713 aa15.32■□□□□ 0.04
RTN3-204ENST00000354497 DLEC1Q9Y238 1755 aa15.32■□□□□ 0.04
RTN3-204ENST00000354497 POTEIP0CG38 1075 aa15.31■□□□□ 0.04
RTN3-204ENST00000354497 POTEJP0CG39 1038 aa15.31■□□□□ 0.04
RTN3-204ENST00000354497 CANXP27824 592 aaKnown RBP15.31■□□□□ 0.04
RTN3-204ENST00000354497 SLC39A6Q13433 755 aa15.31■□□□□ 0.04
RTN3-204ENST00000354497 BCL11AQ9H165 835 aa15.31■□□□□ 0.04
RTN3-204ENST00000354497 BCL2L12Q9HB09 334 aa15.31■□□□□ 0.04
RTN3-204ENST00000354497 CENPBP07199 599 aaPredicted RBP15.3■□□□□ 0.04
RTN3-204ENST00000354497 CCDC24Q8N4L8 307 aa15.3■□□□□ 0.04
RTN3-204ENST00000354497 NRXN2Q9P2S2 1712 aa15.3■□□□□ 0.04
RTN3-204ENST00000354497 CCDC88AQ3V6T2 1871 aa15.3■□□□□ 0.04
RTN3-204ENST00000354497 DDNO94850 711 aaPredicted RBP15.29■□□□□ 0.04
RTN3-204ENST00000354497 SLC52A2Q9HAB3 445 aa15.29■□□□□ 0.04
RTN3-204ENST00000354497 CNTNAP1P78357 1384 aa15.28■□□□□ 0.04
RTN3-204ENST00000354497 NPHP1O15259 732 aa15.28■□□□□ 0.04
RTN3-204ENST00000354497 CTCFP49711 727 aaPredicted RBP15.28■□□□□ 0.04
RTN3-204ENST00000354497 AKAP4Q5JQC9 854 aa15.28■□□□□ 0.04
RTN3-204ENST00000354497 LGR6Q9HBX8 967 aa15.28■□□□□ 0.04
RTN3-204ENST00000354497 PRDM10Q9NQV6 1147 aa15.28■□□□□ 0.04
RTN3-204ENST00000354497 ZNF330Q9Y3S2 320 aaPredicted RBP15.28■□□□□ 0.04
RTN3-204ENST00000354497 PDE6BP35913 854 aa15.27■□□□□ 0.04
RTN3-204ENST00000354497 TAOK3Q9H2K8 898 aa15.27■□□□□ 0.04
RTN3-204ENST00000354497 MORC1Q86VD1 984 aa15.26■□□□□ 0.03
RTN3-204ENST00000354497 SCN11AQ9UI33 1791 aa15.26■□□□□ 0.03
RTN3-204ENST00000354497 VEGFBP49765 207 aa15.26■□□□□ 0.03
RTN3-204ENST00000354497 LBX1P52954 281 aa15.26■□□□□ 0.03
RTN3-204ENST00000354497 EAPPQ56P03 285 aaPredicted RBP15.26■□□□□ 0.03
RTN3-204ENST00000354497 TBC1D9BQ66K14 1250 aa15.26■□□□□ 0.03
RTN3-204ENST00000354497 RNMTO43148 476 aaKnown RBP15.25■□□□□ 0.03
RTN3-204ENST00000354497 SLC34A2O95436 690 aa15.25■□□□□ 0.03
RTN3-204ENST00000354497 CLEC11AQ9Y240 323 aa15.25■□□□□ 0.03
RTN3-204ENST00000354497 A0A087WZG4 1122 aa15.24■□□□□ 0.03
RTN3-204ENST00000354497 IQCA1LA6NCM1 817 aa15.24■□□□□ 0.03
RTN3-204ENST00000354497 TMEM88BA6NKF7 163 aa15.24■□□□□ 0.03
RTN3-204ENST00000354497 FAM161AQ3B820 660 aa15.24■□□□□ 0.03
RTN3-204ENST00000354497 PRR5LQ6MZQ0 368 aa15.24■□□□□ 0.03
RTN3-204ENST00000354497 LDHDQ86WU2 507 aa15.24■□□□□ 0.03
RTN3-204ENST00000354497 BRIP1Q9BX63 1249 aa15.24■□□□□ 0.03
RTN3-204ENST00000354497 PDZRN3Q9UPQ7 1066 aa15.24■□□□□ 0.03
RTN3-204ENST00000354497 COL11A2P13942 1736 aaPredicted RBP15.23■□□□□ 0.03
RTN3-204ENST00000354497 TTC5Q8N0Z6 440 aa15.23■□□□□ 0.03
RTN3-204ENST00000354497 PANK3Q9H999 370 aa15.23■□□□□ 0.03
RTN3-204ENST00000354497 PASKQ96RG2 1323 aa15.22■□□□□ 0.03
RTN3-204ENST00000354497 STARD3NLO95772 234 aa15.22■□□□□ 0.03
RTN3-204ENST00000354497 CNKSR1Q969H4 720 aa15.22■□□□□ 0.03
RTN3-204ENST00000354497 TBC1D2BQ9UPU7 963 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms