RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 SOGA3Q5TF21 947 aa17.65■□□□□ 0.42
COL17A1-201ENST00000353479 TXLNAP40222 546 aa17.65■□□□□ 0.42
COL17A1-201ENST00000353479 YEATS2Q9ULM3 1422 aa17.64■□□□□ 0.42
COL17A1-201ENST00000353479 PIBF1Q8WXW3 757 aa17.64■□□□□ 0.41
COL17A1-201ENST00000353479 ZSCAN31Q96LW9 406 aaPredicted RBP17.64■□□□□ 0.41
COL17A1-201ENST00000353479 ZNF592Q92610 1267 aa17.64■□□□□ 0.41
COL17A1-201ENST00000353479 WDR33Q9C0J8 1336 aaKnown RBP17.64■□□□□ 0.41
COL17A1-201ENST00000353479 PHACTR3Q96KR7 559 aa17.64■□□□□ 0.41
COL17A1-201ENST00000353479 MBD3O95983 291 aa17.64■□□□□ 0.41
COL17A1-201ENST00000353479 U3KPZ7 1027 aaPredicted RBP17.64■□□□□ 0.41
COL17A1-201ENST00000353479 CFAP65Q6ZU64 1925 aaKnown RBP17.64■□□□□ 0.41
COL17A1-201ENST00000353479 ZFYVE9O95405 1425 aa17.63■□□□□ 0.41
COL17A1-201ENST00000353479 CDKL5O76039 1030 aa17.63■□□□□ 0.41
COL17A1-201ENST00000353479 IP6K1Q92551 441 aa17.63■□□□□ 0.41
COL17A1-201ENST00000353479 CDC5LQ99459 802 aaKnown RBP17.63■□□□□ 0.41
COL17A1-201ENST00000353479 C6orf229H3BNL8 230 aa17.63■□□□□ 0.41
COL17A1-201ENST00000353479 POLR3DP05423 398 aaPredicted RBP17.63■□□□□ 0.41
COL17A1-201ENST00000353479 NAPBQ9H115 298 aa17.63■□□□□ 0.41
COL17A1-201ENST00000353479 MYO5CQ9NQX4 1742 aa17.63■□□□□ 0.41
COL17A1-201ENST00000353479 DDX46Q7L014 1031 aaKnown RBP17.63■□□□□ 0.41
COL17A1-201ENST00000353479 MPHOSPH10O00566 681 aaKnown RBP17.62■□□□□ 0.41
COL17A1-201ENST00000353479 UPF3BQ9BZI7 483 aaKnown RBP17.62■□□□□ 0.41
COL17A1-201ENST00000353479 MEIS3Q99687 375 aa17.62■□□□□ 0.41
COL17A1-201ENST00000353479 NBPF6Q5VWK0 638 aa17.62■□□□□ 0.41
COL17A1-201ENST00000353479 NBPF5PQ86XG9 351 aaPredicted RBP17.62■□□□□ 0.41
COL17A1-201ENST00000353479 JMYQ8N9B5 988 aa17.62■□□□□ 0.41
COL17A1-201ENST00000353479 NBPF4Q96M43 638 aa17.62■□□□□ 0.41
COL17A1-201ENST00000353479 ECHDC1Q9NTX5 307 aa17.62■□□□□ 0.41
COL17A1-201ENST00000353479 ABCA8O94911 1581 aa17.61■□□□□ 0.41
COL17A1-201ENST00000353479 ARHGAP45Q92619 1136 aa17.61■□□□□ 0.41
COL17A1-201ENST00000353479 SNRKQ9NRH2 765 aa17.61■□□□□ 0.41
COL17A1-201ENST00000353479 BTG4Q9NY30 223 aa17.61■□□□□ 0.41
COL17A1-201ENST00000353479 COL17A1Q9UMD9 1497 aaPredicted RBP17.61■□□□□ 0.41
COL17A1-201ENST00000353479 ME1P48163 572 aa17.61■□□□□ 0.41
COL17A1-201ENST00000353479 MAP3K5Q99683 1374 aa17.61■□□□□ 0.41
COL17A1-201ENST00000353479 DDX11Q96FC9 970 aa17.61■□□□□ 0.41
COL17A1-201ENST00000353479 TMEM2Q9UHN6 1383 aa17.61■□□□□ 0.41
COL17A1-201ENST00000353479 A0A0U1RQG5 324 aaPredicted RBP17.61■□□□□ 0.41
COL17A1-201ENST00000353479 TSHZ3Q63HK5 1081 aa17.61■□□□□ 0.41
COL17A1-201ENST00000353479 MRPL50Q8N5N7 158 aaKnown RBP17.6■□□□□ 0.41
COL17A1-201ENST00000353479 GOLIM4O00461 696 aa17.6■□□□□ 0.41
COL17A1-201ENST00000353479 KRT18P05783 430 aaKnown RBP17.6■□□□□ 0.41
COL17A1-201ENST00000353479 MKNK2Q9HBH9 465 aa17.6■□□□□ 0.41
COL17A1-201ENST00000353479 EPS15P42566 896 aa17.6■□□□□ 0.41
COL17A1-201ENST00000353479 CRACR2BQ8N4Y2 399 aaPredicted RBP17.6■□□□□ 0.41
COL17A1-201ENST00000353479 SMARCC1Q92922 1105 aaPredicted RBP17.6■□□□□ 0.41
COL17A1-201ENST00000353479 KRT85P78386 507 aa17.59■□□□□ 0.41
COL17A1-201ENST00000353479 HOMER1Q86YM7 354 aa17.59■□□□□ 0.41
COL17A1-201ENST00000353479 CFAP74Q9C0B2 1584 aa17.59■□□□□ 0.41
COL17A1-201ENST00000353479 IGHDP01880 384 aa17.59■□□□□ 0.41
COL17A1-201ENST00000353479 KRT24Q2M2I5 525 aa17.59■□□□□ 0.41
COL17A1-201ENST00000353479 LETM1O95202 739 aaPredicted RBP17.59■□□□□ 0.41
COL17A1-201ENST00000353479 PIK3C2GO75747 1445 aa17.59■□□□□ 0.41
COL17A1-201ENST00000353479 PER1O15534 1290 aaPredicted RBP17.58■□□□□ 0.41
COL17A1-201ENST00000353479 KSR2Q6VAB6 950 aa17.58■□□□□ 0.41
COL17A1-201ENST00000353479 EVI5LQ96CN4 794 aa17.58■□□□□ 0.41
COL17A1-201ENST00000353479 LTKP29376 864 aa17.58■□□□□ 0.4
COL17A1-201ENST00000353479 TSPYL6Q8N831 410 aa17.58■□□□□ 0.4
COL17A1-201ENST00000353479 ZNF622Q969S3 477 aaKnown RBP eCLIP17.58■□□□□ 0.4
COL17A1-201ENST00000353479 DCAF5Q96JK2 942 aa17.58■□□□□ 0.4
COL17A1-201ENST00000353479 ZNF287Q9HBT7 754 aa17.58■□□□□ 0.4
COL17A1-201ENST00000353479 NOL7Q9UMY1 257 aaKnown RBP17.58■□□□□ 0.4
COL17A1-201ENST00000353479 ARHGEF5Q12774 1597 aa17.58■□□□□ 0.4
COL17A1-201ENST00000353479 ADGBQ8N7X0 1667 aa17.58■□□□□ 0.4
COL17A1-201ENST00000353479 SIRT1Q96EB6 747 aa17.58■□□□□ 0.4
COL17A1-201ENST00000353479 RSPH6AQ9H0K4 717 aa17.58■□□□□ 0.4
COL17A1-201ENST00000353479 DDX17Q92841 729 aaKnown RBP17.57■□□□□ 0.4
COL17A1-201ENST00000353479 EDC4Q6P2E9 1401 aaKnown RBP17.57■□□□□ 0.4
COL17A1-201ENST00000353479 CCDC152Q4G0S7 254 aa17.57■□□□□ 0.4
COL17A1-201ENST00000353479 CHD1O14646 1710 aa17.57■□□□□ 0.4
COL17A1-201ENST00000353479 ST5P78524 1137 aa17.57■□□□□ 0.4
COL17A1-201ENST00000353479 CCDC83Q8IWF9 413 aa17.57■□□□□ 0.4
COL17A1-201ENST00000353479 PDILTQ8N807 584 aa17.57■□□□□ 0.4
COL17A1-201ENST00000353479 NASPP49321 788 aaPredicted RBP17.57■□□□□ 0.4
COL17A1-201ENST00000353479 SETDB2Q96T68 719 aa17.57■□□□□ 0.4
COL17A1-201ENST00000353479 R3HCC1Q9Y3T6 440 aaKnown RBP17.57■□□□□ 0.4
COL17A1-201ENST00000353479 RNMTO43148 476 aaKnown RBP17.56■□□□□ 0.4
COL17A1-201ENST00000353479 GRM8O00222 908 aa17.56■□□□□ 0.4
COL17A1-201ENST00000353479 ZNF213O14771 459 aa17.56■□□□□ 0.4
COL17A1-201ENST00000353479 PCDH11XQ9BZA7 1347 aa17.56■□□□□ 0.4
COL17A1-201ENST00000353479 PCDH11YQ9BZA8 1340 aa17.56■□□□□ 0.4
COL17A1-201ENST00000353479 RANBP6O60518 1105 aaKnown RBP17.56■□□□□ 0.4
COL17A1-201ENST00000353479 TMEM132AQ24JP5 1023 aa17.56■□□□□ 0.4
COL17A1-201ENST00000353479 RHPN1Q8TCX5 695 aa17.56■□□□□ 0.4
COL17A1-201ENST00000353479 PRM3Q9NNZ6 103 aa17.56■□□□□ 0.4
COL17A1-201ENST00000353479 TSPY26PQ9H489 355 aa17.55■□□□□ 0.4
COL17A1-201ENST00000353479 NIP7Q9Y221 180 aaKnown RBP eCLIP17.55■□□□□ 0.4
COL17A1-201ENST00000353479 GOLGA6L1Q8N7Z2 621 aa17.55■□□□□ 0.4
COL17A1-201ENST00000353479 WASF1Q92558 559 aa17.55■□□□□ 0.4
COL17A1-201ENST00000353479 ALDH1L1O75891 902 aa17.55■□□□□ 0.4
COL17A1-201ENST00000353479 SPATA32Q96LK8 384 aa17.55■□□□□ 0.4
COL17A1-201ENST00000353479 MBD5Q9P267 1494 aa17.55■□□□□ 0.4
COL17A1-201ENST00000353479 LMBR1LQ6UX01 489 aa17.54■□□□□ 0.4
COL17A1-201ENST00000353479 TRIM5Q9C035 493 aa17.54■□□□□ 0.4
COL17A1-201ENST00000353479 DZIP3Q86Y13 1208 aaKnown RBP17.54■□□□□ 0.4
COL17A1-201ENST00000353479 NAP1L1P55209 391 aaKnown RBP17.54■□□□□ 0.4
COL17A1-201ENST00000353479 TTF1Q15361 905 aaPredicted RBP17.54■□□□□ 0.4
COL17A1-201ENST00000353479 VAMP4O75379 141 aa17.54■□□□□ 0.4
COL17A1-201ENST00000353479 SBNO1A3KN83 1393 aa17.53■□□□□ 0.4
COL17A1-201ENST00000353479 ZHX3Q9H4I2 956 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms