RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 SLIT3O75094 1523 aa11.8□□□□□ -0.52
ATG4A-202ENST00000345734 GCP02774 474 aa11.8□□□□□ -0.52
ATG4A-202ENST00000345734 C8orf58Q8NAV2 365 aa11.8□□□□□ -0.52
ATG4A-202ENST00000345734 ALS2Q96Q42 1657 aa11.8□□□□□ -0.52
ATG4A-202ENST00000345734 TRIM27P14373 513 aa11.8□□□□□ -0.52
ATG4A-202ENST00000345734 CENPQQ7L2Z9 268 aaPredicted RBP11.8□□□□□ -0.52
ATG4A-202ENST00000345734 PHRF1Q9P1Y6 1649 aaKnown RBP11.79□□□□□ -0.52
ATG4A-202ENST00000345734 ALDH1L2Q3SY69 923 aa11.79□□□□□ -0.52
ATG4A-202ENST00000345734 ARHGEF25Q86VW2 580 aa11.79□□□□□ -0.52
ATG4A-202ENST00000345734 FTSJ3Q8IY81 847 aaKnown RBP11.79□□□□□ -0.52
ATG4A-202ENST00000345734 DZIP1LQ8IYY4 767 aaKnown RBP11.79□□□□□ -0.52
ATG4A-202ENST00000345734 USP19O94966 1318 aa11.79□□□□□ -0.52
ATG4A-202ENST00000345734 TCERG1O14776 1098 aaKnown RBP11.78□□□□□ -0.52
ATG4A-202ENST00000345734 NBPF6Q5VWK0 638 aa11.78□□□□□ -0.52
ATG4A-202ENST00000345734 NBPF4Q96M43 638 aa11.78□□□□□ -0.52
ATG4A-202ENST00000345734 CRB1P82279 1406 aa11.78□□□□□ -0.52
ATG4A-202ENST00000345734 RGPD5Q99666 1765 aa11.78□□□□□ -0.52
ATG4A-202ENST00000345734 MSH6P52701 1360 aa11.78□□□□□ -0.52
ATG4A-202ENST00000345734 CHL1O00533 1208 aa11.78□□□□□ -0.52
ATG4A-202ENST00000345734 IGHDP01880 384 aa11.78□□□□□ -0.52
ATG4A-202ENST00000345734 MVPQ14764 893 aaKnown RBP11.78□□□□□ -0.52
ATG4A-202ENST00000345734 TWISTNBQ3B726 338 aaPredicted RBP11.78□□□□□ -0.52
ATG4A-202ENST00000345734 ATF7IPQ6VMQ6 1270 aa11.78□□□□□ -0.52
ATG4A-202ENST00000345734 GAS2L2Q8NHY3 880 aa11.78□□□□□ -0.52
ATG4A-202ENST00000345734 SLC39A7Q92504 469 aa11.78□□□□□ -0.52
ATG4A-202ENST00000345734 ZNF335Q9H4Z2 1342 aaPredicted RBP11.77□□□□□ -0.52
ATG4A-202ENST00000345734 KRT24Q2M2I5 525 aa11.77□□□□□ -0.52
ATG4A-202ENST00000345734 MRPL50Q8N5N7 158 aaKnown RBP11.77□□□□□ -0.52
ATG4A-202ENST00000345734 RTF1Q92541 710 aaKnown RBP11.77□□□□□ -0.52
ATG4A-202ENST00000345734 LRRC59Q96AG4 307 aaKnown RBP11.77□□□□□ -0.52
ATG4A-202ENST00000345734 MIS18AQ9NYP9 233 aa11.77□□□□□ -0.52
ATG4A-202ENST00000345734 MED1Q15648 1581 aaPredicted RBP11.77□□□□□ -0.53
ATG4A-202ENST00000345734 KIF16BQ96L93 1317 aa11.77□□□□□ -0.53
ATG4A-202ENST00000345734 AMHR2Q16671 573 aa11.77□□□□□ -0.53
ATG4A-202ENST00000345734 ZNF428Q96B54 188 aa11.77□□□□□ -0.53
ATG4A-202ENST00000345734 MAP3K7O43318 606 aa11.76□□□□□ -0.53
ATG4A-202ENST00000345734 PTCD2Q8WV60 388 aaKnown RBP11.76□□□□□ -0.53
ATG4A-202ENST00000345734 PCDHB15Q9Y5E8 787 aa11.76□□□□□ -0.53
ATG4A-202ENST00000345734 MS4A1P11836 297 aa11.75□□□□□ -0.53
ATG4A-202ENST00000345734 TSR1Q2NL82 804 aaKnown RBP11.75□□□□□ -0.53
ATG4A-202ENST00000345734 TMEM57Q8N5G2 664 aa11.75□□□□□ -0.53
ATG4A-202ENST00000345734 AXIN2Q9Y2T1 843 aa11.75□□□□□ -0.53
ATG4A-202ENST00000345734 IPO8O15397 1037 aaKnown RBP11.75□□□□□ -0.53
ATG4A-202ENST00000345734 POTEIP0CG38 1075 aa11.75□□□□□ -0.53
ATG4A-202ENST00000345734 ZC3H6P61129 1189 aaKnown RBP11.75□□□□□ -0.53
ATG4A-202ENST00000345734 ITPRIPQ8IWB1 547 aa11.75□□□□□ -0.53
ATG4A-202ENST00000345734 NPHP3Q7Z494 1330 aa11.74□□□□□ -0.53
ATG4A-202ENST00000345734 GNAT3A8MTJ3 354 aa11.74□□□□□ -0.53
ATG4A-202ENST00000345734 REPIN1Q9BWE0 567 aaKnown RBP11.74□□□□□ -0.53
ATG4A-202ENST00000345734 PXDNQ92626 1479 aa11.74□□□□□ -0.53
ATG4A-202ENST00000345734 LRRC37A3O60309 1634 aa11.74□□□□□ -0.53
ATG4A-202ENST00000345734 C7P10643 843 aa11.74□□□□□ -0.53
ATG4A-202ENST00000345734 FAM161AQ3B820 660 aa11.74□□□□□ -0.53
ATG4A-202ENST00000345734 CABLES1Q8TDN4 633 aa11.74□□□□□ -0.53
ATG4A-202ENST00000345734 ANKRD24Q8TF21 1146 aa11.74□□□□□ -0.53
ATG4A-202ENST00000345734 MAP3K5Q99683 1374 aa11.73□□□□□ -0.53
ATG4A-202ENST00000345734 HTATSF1O43719 755 aaKnown RBP11.73□□□□□ -0.53
ATG4A-202ENST00000345734 AAMPQ13685 434 aa11.73□□□□□ -0.53
ATG4A-202ENST00000345734 BRINP3Q76B58 766 aa11.73□□□□□ -0.53
ATG4A-202ENST00000345734 IL17REQ8NFR9 667 aa11.73□□□□□ -0.53
ATG4A-202ENST00000345734 ARXQ96QS3 562 aa11.73□□□□□ -0.53
ATG4A-202ENST00000345734 ANO8Q9HCE9 1232 aaPredicted RBP11.73□□□□□ -0.53
ATG4A-202ENST00000345734 TSPYL4Q9UJ04 414 aa11.73□□□□□ -0.53
ATG4A-202ENST00000345734 TNS3Q68CZ2 1445 aa11.72□□□□□ -0.53
ATG4A-202ENST00000345734 GIGYF2Q6Y7W6 1299 aaKnown RBP11.72□□□□□ -0.53
ATG4A-202ENST00000345734 NLRP7Q8WX94 980 aa11.72□□□□□ -0.53
ATG4A-202ENST00000345734 NPDC1Q9NQX5 325 aaPredicted RBP11.72□□□□□ -0.53
ATG4A-202ENST00000345734 DDX19BQ9UMR2 479 aa11.72□□□□□ -0.53
ATG4A-202ENST00000345734 KIAA0232Q92628 1395 aa11.72□□□□□ -0.53
ATG4A-202ENST00000345734 EN1Q05925 392 aaPredicted RBP11.71□□□□□ -0.53
ATG4A-202ENST00000345734 SPATA31A3Q5VYP0 1347 aa11.71□□□□□ -0.54
ATG4A-202ENST00000345734 CRYBG1Q9Y4K1 1723 aa11.71□□□□□ -0.54
ATG4A-202ENST00000345734 ARHGAP45Q92619 1136 aa11.71□□□□□ -0.54
ATG4A-202ENST00000345734 DDRGK1Q96HY6 314 aa11.71□□□□□ -0.54
ATG4A-202ENST00000345734 PCDHGA10Q9Y5H3 936 aa11.71□□□□□ -0.54
ATG4A-202ENST00000345734 VIRMAQ69YN4 1812 aaKnown RBP11.7□□□□□ -0.54
ATG4A-202ENST00000345734 NCAPD2Q15021 1401 aa11.7□□□□□ -0.54
ATG4A-202ENST00000345734 COL18A1P39060 1754 aa11.7□□□□□ -0.54
ATG4A-202ENST00000345734 CAMTA1Q9Y6Y1 1673 aa11.7□□□□□ -0.54
ATG4A-202ENST00000345734 RGS3P49796 1198 aa11.7□□□□□ -0.54
ATG4A-202ENST00000345734 SLAIN2Q9P270 581 aa11.7□□□□□ -0.54
ATG4A-202ENST00000345734 PHOX2BQ99453 314 aa11.69□□□□□ -0.54
ATG4A-202ENST00000345734 ZBTB40Q9NUA8 1239 aa11.69□□□□□ -0.54
ATG4A-202ENST00000345734 LGR6Q9HBX8 967 aa11.69□□□□□ -0.54
ATG4A-202ENST00000345734 ABCC4O15439 1325 aa11.69□□□□□ -0.54
ATG4A-202ENST00000345734 ERBB3P21860 1342 aa11.69□□□□□ -0.54
ATG4A-202ENST00000345734 LMO7Q8WWI1 1683 aa11.68□□□□□ -0.54
ATG4A-202ENST00000345734 TAF7Q15545 349 aaPredicted RBP11.68□□□□□ -0.54
ATG4A-202ENST00000345734 CHRNA2Q15822 529 aa11.68□□□□□ -0.54
ATG4A-202ENST00000345734 ZNF530Q6P9A1 599 aaPredicted RBP11.68□□□□□ -0.54
ATG4A-202ENST00000345734 PLEKHO1Q53GL0 409 aaPredicted RBP11.68□□□□□ -0.54
ATG4A-202ENST00000345734 BACH2Q9BYV9 841 aa11.68□□□□□ -0.54
ATG4A-202ENST00000345734 RWDD1Q9H446 243 aaPredicted RBP11.68□□□□□ -0.54
ATG4A-202ENST00000345734 API5Q9BZZ5 524 aaKnown RBP11.67□□□□□ -0.54
ATG4A-202ENST00000345734 CEMIPQ8WUJ3 1361 aa11.67□□□□□ -0.54
ATG4A-202ENST00000345734 ZBTB7BO15156 539 aaPredicted RBP11.66□□□□□ -0.54
ATG4A-202ENST00000345734 PCDHGA4Q9Y5G9 962 aa11.66□□□□□ -0.54
ATG4A-202ENST00000345734 RGS12O14924 1447 aa11.66□□□□□ -0.54
ATG4A-202ENST00000345734 SLC34A2O95436 690 aa11.66□□□□□ -0.54
ATG4A-202ENST00000345734 MDM2Q00987 491 aaPredicted RBP11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 147.4 ms